Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53000 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99838 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47148 * 89.99653 * 11 9 7 13 13 H 1.48496 * 109.47010 * 210.00013 * 11 9 7 14 14 H 1.48501 * 109.46644 * 329.99739 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 5 4 17 17 C 1.47537 * 120.00133 * 180.27865 * 15 5 4 18 18 C 1.39705 * 120.19305 * 89.44556 * 17 15 5 19 19 C 1.50697 * 120.04488 * 0.02712 * 18 17 15 20 20 C 1.37792 * 119.91022 * 179.76613 * 18 17 15 21 21 C 1.38552 * 120.29459 * 0.52290 * 20 18 17 22 22 C 1.38054 * 120.39383 * 359.73102 * 21 20 18 23 23 C 1.38707 * 120.08464 * 0.02562 * 22 21 20 24 24 O 1.35653 * 120.15288 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46884 * 59.99882 * 1 2 3 26 26 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 28 28 H 1.08991 * 109.47132 * 60.00086 * 3 2 1 29 29 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 30 30 H 1.08994 * 109.47070 * 305.00252 * 4 3 2 31 31 H 1.08996 * 109.47306 * 184.99996 * 4 3 2 32 32 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 33 33 H 1.09004 * 109.47612 * 149.99559 * 6 5 4 34 34 H 0.97009 * 119.99873 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47276 * 89.99587 * 19 18 17 36 36 H 1.08999 * 109.47100 * 209.99756 * 19 18 17 37 37 H 1.08998 * 109.47396 * 329.99926 * 19 18 17 38 38 H 1.07995 * 119.85183 * 180.23333 * 20 18 17 39 39 H 1.07997 * 119.79983 * 179.72177 * 21 20 18 40 40 H 1.07996 * 119.95847 * 180.02562 * 22 21 20 41 41 H 0.96698 * 113.99734 * 269.98081 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8606 -2.6288 -0.9528 10 7 4.9854 -3.5443 -1.3070 11 14 7.5910 -3.1317 -0.4603 12 1 7.6356 -3.3845 1.0024 13 1 7.9731 -4.3682 -1.1883 14 1 8.5396 -2.0419 -0.8034 15 6 4.2615 1.3338 -2.3218 16 8 4.1544 2.5427 -2.2470 17 6 4.6990 0.7088 -3.5847 18 6 3.7567 0.3257 -4.5423 19 6 2.2884 0.5506 -4.2883 20 6 4.1721 -0.2531 -5.7218 21 6 5.5203 -0.4672 -5.9584 22 6 6.4617 -0.0983 -5.0184 23 6 6.0618 0.4902 -3.8278 24 8 6.9856 0.8537 -2.9033 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8409 31 1 3.9786 2.1765 0.0889 32 1 3.3853 -1.3629 -0.6735 33 1 3.9120 -1.2114 -2.3669 34 1 5.2386 -4.4808 -1.3128 35 1 2.0010 1.5327 -4.6636 36 1 1.7093 -0.2179 -4.8003 37 1 2.0930 0.4996 -3.2172 38 1 3.4431 -0.5454 -6.4630 39 1 5.8367 -0.9256 -6.8837 40 1 7.5108 -0.2681 -5.2104 41 1 7.1929 0.1612 -2.2611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599332016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -101.633842 kcal Electronic energy + Delta-G solvation = -25056.627207 eV Core-core repulsion = 21515.919499 eV Total energy + Delta-G solvation = -3540.707708 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01509 -38.26751 -37.24433 -36.29389 -34.84784 -32.65429 -32.20912 -30.31336 -29.12695 -27.04518 -26.68422 -25.90458 -23.67322 -22.88761 -21.78092 -21.13508 -18.72713 -17.56523 -16.72803 -16.52249 -16.12263 -15.76855 -15.58729 -15.31580 -14.82496 -14.56277 -14.49690 -14.01209 -13.56136 -13.11056 -13.08906 -12.84007 -12.35729 -12.30555 -12.01196 -11.73942 -11.55027 -11.44083 -11.40537 -11.35259 -11.13992 -10.97133 -10.89607 -10.54958 -10.22118 -10.11727 -9.76471 -9.40983 -9.07447 -8.57913 -8.23566 -8.06830 -7.70776 -6.17600 -4.26060 1.62887 1.74102 3.19540 3.26308 3.27735 3.34307 3.83342 4.08359 4.15470 4.31210 4.80183 5.15307 5.18535 5.21545 5.33373 5.37710 5.48762 5.61206 5.63796 5.66677 5.68482 5.76396 5.84332 5.88785 5.92911 6.04874 6.14575 6.28718 6.35695 6.47685 6.74205 6.79094 6.85006 6.91243 7.21358 7.34315 7.47278 7.59072 7.77943 8.09271 8.25906 8.34796 8.77476 8.98756 9.40422 10.88795 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.008787 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.889063 B = 3185.630452 C = 4605.456098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.048 3.952 4 C 0.120 3.880 5 N -0.581 5.581 6 C 0.240 3.760 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.069 3.931 10 N -0.882 5.882 11 Si 0.889 3.111 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.571 3.429 16 O -0.568 6.568 17 C -0.121 4.121 18 C -0.041 4.041 19 C -0.116 4.116 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.156 4.156 23 C 0.167 3.833 24 O -0.502 6.502 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.098 4.356 -3.672 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.310 5.310 6 C 0.121 3.879 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.135 4.135 10 N -0.519 5.519 11 Si 0.716 3.284 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.358 3.642 16 O -0.449 6.449 17 C -0.125 4.125 18 C -0.041 4.041 19 C -0.173 4.173 20 C -0.156 4.156 21 C -0.111 4.111 22 C -0.175 4.175 23 C 0.121 3.879 24 O -0.316 6.316 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -5.074 5.095 -3.908 8.184 hybrid contribution 0.826 -0.854 0.650 1.354 sum -4.247 4.242 -3.258 6.830 Atomic orbital electron populations 1.22682 0.82194 1.02388 0.99167 1.88066 1.18627 1.27386 1.95201 1.23025 0.95271 0.84940 0.99783 1.21362 0.91095 0.99711 0.88185 1.48187 1.63097 1.10041 1.09688 1.19469 0.97187 0.72495 0.98781 1.21468 0.97509 0.92210 1.47071 0.92270 1.24917 0.97296 0.96386 0.94857 1.69931 1.34250 1.01173 1.46551 0.86654 0.84441 0.78409 0.78906 1.20456 1.21061 1.19683 1.18041 0.76427 0.86032 0.83678 1.90686 1.55456 1.14310 1.84479 1.19977 0.93450 1.03200 0.95859 1.19652 0.95041 0.96313 0.93137 1.20824 0.91627 1.01781 1.03034 1.20788 0.95896 1.01969 0.96976 1.20943 0.92774 0.98731 0.98681 1.21238 1.00187 1.01268 0.94802 1.18200 0.86442 0.93731 0.89511 1.84597 1.58766 1.44172 1.44085 0.94660 0.89868 0.94722 0.93149 0.93421 0.89309 0.89417 0.93252 0.94484 0.92550 0.91206 0.91189 0.91243 0.85943 0.85946 0.85571 0.73779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.59 9.53 -35.23 -0.34 -6.92 16 3 C 0.05 0.78 6.28 37.16 0.23 1.01 16 4 C 0.12 2.25 5.81 -4.04 -0.02 2.22 16 5 N -0.58 -12.50 2.41 -176.29 -0.43 -12.93 16 6 C 0.24 5.77 4.80 -5.19 -0.02 5.75 16 7 C -0.54 -13.63 8.60 -34.44 -0.30 -13.93 16 8 H 0.06 1.46 6.69 -52.48 -0.35 1.11 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.88 -24.03 13.29 55.43 0.74 -23.29 16 11 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 C 0.57 12.73 5.11 -12.47 -0.06 12.67 16 16 O -0.57 -13.70 16.68 5.28 0.09 -13.61 16 17 C -0.12 -2.57 3.94 -104.84 -0.41 -2.98 16 18 C -0.04 -0.75 5.45 -104.24 -0.57 -1.32 16 19 C -0.12 -1.88 9.62 36.00 0.35 -1.53 16 20 C -0.14 -2.22 9.68 -39.63 -0.38 -2.60 16 21 C -0.09 -1.46 10.03 -39.53 -0.40 -1.85 16 22 C -0.16 -2.76 9.98 -39.48 -0.39 -3.16 16 23 C 0.17 3.45 6.72 -38.69 -0.26 3.19 16 24 O -0.50 -10.52 12.95 -18.66 -0.24 -10.76 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.65 8.07 -51.93 -0.42 1.23 16 31 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 32 H 0.05 1.29 7.11 -51.93 -0.37 0.92 16 33 H 0.04 0.96 6.52 -51.93 -0.34 0.62 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.07 1.25 7.08 -51.93 -0.37 0.89 16 38 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.40 8.08 7.02 45.56 0.32 8.40 16 LS Contribution 347.55 15.07 5.24 5.24 Total: -1.00 -30.66 347.55 -6.46 -37.12 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -5.27 Total: 9.66 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.23 Total: 0.69 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.31 Total: -36.22 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.49 Total: -31.30 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.66 -6.46 -37.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599332016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.514 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds