Wall clock time and date at job start Tue Mar 31 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42908 * 113.99991 * 2 1 4 4 C 1.53000 * 109.47136 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47304 * 64.99838 * 4 3 2 6 6 C 1.46496 * 120.00271 * 270.00475 * 5 4 3 7 7 C 1.50703 * 109.47067 * 269.99875 * 6 5 4 8 8 H 1.08005 * 119.99711 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00286 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47148 * 89.99653 * 11 9 7 13 13 H 1.48496 * 109.47010 * 210.00013 * 11 9 7 14 14 H 1.48501 * 109.46644 * 329.99739 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 5 4 17 17 C 1.47537 * 120.00133 * 180.27865 * 15 5 4 18 18 C 1.39705 * 120.19305 * 89.44556 * 17 15 5 19 19 C 1.50697 * 120.04488 * 0.02712 * 18 17 15 20 20 C 1.37792 * 119.91022 * 179.76613 * 18 17 15 21 21 C 1.38552 * 120.29459 * 0.52290 * 20 18 17 22 22 C 1.38054 * 120.39383 * 359.73102 * 21 20 18 23 23 C 1.38707 * 120.08464 * 0.02562 * 22 21 20 24 24 O 1.35653 * 120.15288 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46884 * 59.99882 * 1 2 3 26 26 H 1.08995 * 109.47033 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46739 * 300.00029 * 1 2 3 28 28 H 1.08991 * 109.47132 * 60.00086 * 3 2 1 29 29 H 1.09001 * 109.46927 * 300.00079 * 3 2 1 30 30 H 1.08994 * 109.47070 * 305.00252 * 4 3 2 31 31 H 1.08996 * 109.47306 * 184.99996 * 4 3 2 32 32 H 1.08997 * 109.47346 * 29.99460 * 6 5 4 33 33 H 1.09004 * 109.47612 * 149.99559 * 6 5 4 34 34 H 0.97009 * 119.99873 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47276 * 89.99587 * 19 18 17 36 36 H 1.08999 * 109.47100 * 209.99756 * 19 18 17 37 37 H 1.08998 * 109.47396 * 329.99926 * 19 18 17 38 38 H 1.07995 * 119.85183 * 180.23333 * 20 18 17 39 39 H 1.07997 * 119.79983 * 179.72177 * 21 20 18 40 40 H 1.07996 * 119.95847 * 180.02562 * 22 21 20 41 41 H 0.96698 * 113.99734 * 269.98081 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.1052 -0.8920 -1.3428 7 6 5.5010 -1.2978 -0.9450 8 1 6.2198 -0.5459 -0.6545 9 6 5.8606 -2.6288 -0.9528 10 7 4.9854 -3.5443 -1.3070 11 14 7.5910 -3.1317 -0.4603 12 1 7.6356 -3.3845 1.0024 13 1 7.9731 -4.3682 -1.1883 14 1 8.5396 -2.0419 -0.8034 15 6 4.2615 1.3338 -2.3218 16 8 4.1544 2.5427 -2.2470 17 6 4.6990 0.7088 -3.5847 18 6 3.7567 0.3257 -4.5423 19 6 2.2884 0.5506 -4.2883 20 6 4.1721 -0.2531 -5.7218 21 6 5.5203 -0.4672 -5.9584 22 6 6.4617 -0.0983 -5.0184 23 6 6.0618 0.4902 -3.8278 24 8 6.9856 0.8537 -2.9033 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6887 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8515 0.5683 0.8409 31 1 3.9786 2.1765 0.0889 32 1 3.3853 -1.3629 -0.6735 33 1 3.9120 -1.2114 -2.3669 34 1 5.2386 -4.4808 -1.3128 35 1 2.0010 1.5327 -4.6636 36 1 1.7093 -0.2179 -4.8003 37 1 2.0930 0.4996 -3.2172 38 1 3.4431 -0.5454 -6.4630 39 1 5.8367 -0.9256 -6.8837 40 1 7.5108 -0.2681 -5.2104 41 1 7.1929 0.1612 -2.2611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599332016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:00 Heat of formation + Delta-G solvation = -121.945133 kcal Electronic energy + Delta-G solvation = -25057.507970 eV Core-core repulsion = 21515.919499 eV Total energy + Delta-G solvation = -3541.588471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56921 -39.76740 -38.63307 -37.77193 -36.61762 -34.57169 -33.56014 -31.79338 -30.61871 -28.84832 -27.99328 -27.13063 -25.23370 -24.67336 -23.22161 -22.53547 -20.30846 -19.18665 -18.38314 -18.23761 -17.69737 -17.16958 -17.05730 -16.70818 -16.42661 -16.14733 -15.88803 -15.49375 -15.03077 -14.60357 -14.44373 -14.29475 -14.15522 -13.62564 -13.59450 -13.33677 -13.09117 -12.86113 -12.80690 -12.71011 -12.66573 -12.58225 -12.45791 -12.11837 -11.94930 -11.68377 -11.63436 -10.84871 -10.62261 -10.50604 -9.66671 -9.48529 -9.44760 -8.15938 -6.31002 0.23051 0.36457 1.42116 1.44724 1.52235 1.63566 2.25543 2.43383 2.67336 2.91971 3.14209 3.37343 3.68596 3.89883 4.06142 4.11026 4.20514 4.35605 4.37825 4.43777 4.52090 4.54751 4.58177 4.66345 4.68346 4.78963 4.84492 4.86989 4.91222 5.02234 5.17328 5.32910 5.42131 5.43774 5.54994 5.67222 5.85160 5.92679 6.11646 6.27010 6.54617 6.69906 6.83361 7.23402 7.40948 8.90124 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.008787 C = 0.006078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.889063 B = 3185.630452 C = 4605.456098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.111 3.889 5 N -0.580 5.580 6 C 0.265 3.735 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.028 3.972 10 N -0.915 5.915 11 Si 0.949 3.051 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.571 3.429 16 O -0.596 6.596 17 C -0.158 4.158 18 C -0.058 4.058 19 C -0.112 4.112 20 C -0.133 4.133 21 C -0.084 4.084 22 C -0.164 4.164 23 C 0.133 3.867 24 O -0.512 6.512 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.025 0.975 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.162 0.838 39 H 0.166 0.834 40 H 0.147 0.853 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 3.911 -4.931 8.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.020 4.020 4 C -0.011 4.011 5 N -0.308 5.308 6 C 0.145 3.855 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.173 4.173 10 N -0.553 5.553 11 Si 0.774 3.226 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.360 3.640 16 O -0.479 6.479 17 C -0.162 4.162 18 C -0.059 4.059 19 C -0.168 4.168 20 C -0.151 4.151 21 C -0.102 4.102 22 C -0.182 4.182 23 C 0.087 3.913 24 O -0.326 6.326 25 H 0.061 0.939 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.179 0.821 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.094 4.666 -5.157 8.621 hybrid contribution 0.755 -0.717 1.001 1.444 sum -4.339 3.949 -4.157 7.190 Atomic orbital electron populations 1.22880 0.79926 1.03375 1.00673 1.88013 1.21218 1.28027 1.95479 1.22896 0.93320 0.84896 1.00915 1.21563 0.93236 0.99427 0.86918 1.48146 1.62976 1.09100 1.10618 1.18973 0.96102 0.73688 0.96743 1.21622 0.97824 0.92373 1.46540 0.92375 1.25596 1.00693 0.96302 0.94720 1.70041 1.36086 1.01446 1.47753 0.85699 0.80452 0.78194 0.78267 1.20497 1.20976 1.18382 1.18308 0.75750 0.85703 0.84253 1.90642 1.56875 1.15315 1.85063 1.20156 0.94518 1.05314 0.96162 1.20057 0.95621 0.96512 0.93714 1.20827 0.90919 1.03401 1.01660 1.21286 0.97159 1.00127 0.96532 1.21484 0.92211 0.96997 0.99461 1.21570 1.01906 1.00649 0.94088 1.18604 0.86285 0.95731 0.90638 1.84585 1.59108 1.44472 1.44458 0.93862 0.89233 0.92411 0.89824 0.94237 0.89674 0.89154 0.95687 0.96448 0.92509 0.90031 0.88542 0.93884 0.82087 0.81602 0.83574 0.74174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -14.44 9.53 -148.98 -1.42 -15.86 16 3 C 0.06 1.87 6.28 71.98 0.45 2.32 16 4 C 0.11 4.27 5.81 86.38 0.50 4.77 16 5 N -0.58 -25.81 2.41 -829.92 -2.00 -27.81 16 6 C 0.27 13.17 4.80 85.63 0.41 13.59 16 7 C -0.55 -27.82 8.60 25.60 0.22 -27.60 16 8 H 0.06 2.93 6.69 -2.91 -0.02 2.91 16 9 C 0.03 1.44 5.46 84.65 0.46 1.90 16 10 N -0.91 -50.32 13.29 21.45 0.28 -50.04 16 11 Si 0.95 40.60 29.54 68.60 2.03 42.63 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 15 C 0.57 26.26 5.11 86.70 0.44 26.71 16 16 O -0.60 -29.61 16.68 -4.01 -0.07 -29.68 16 17 C -0.16 -6.79 3.94 -20.01 -0.08 -6.87 16 18 C -0.06 -2.11 5.45 -19.62 -0.11 -2.22 16 19 C -0.11 -3.53 9.62 71.23 0.69 -2.85 16 20 C -0.13 -3.89 9.68 22.24 0.22 -3.68 16 21 C -0.08 -2.34 10.03 22.30 0.22 -2.12 16 22 C -0.16 -5.53 9.98 22.34 0.22 -5.30 16 23 C 0.13 5.51 6.72 22.85 0.15 5.67 16 24 O -0.51 -21.98 12.95 -89.69 -1.16 -23.15 16 25 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 3.27 8.07 -2.39 -0.02 3.25 16 31 H 0.09 3.37 7.42 -2.39 -0.02 3.35 16 32 H 0.03 1.36 7.11 -2.39 -0.02 1.34 16 33 H 0.02 0.93 6.52 -2.38 -0.02 0.92 16 34 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.10 2.46 8.09 -2.39 -0.02 2.44 16 37 H 0.04 1.57 7.08 -2.39 -0.02 1.56 16 38 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.40 16.52 7.02 -74.06 -0.52 16.00 16 Total: -1.00 -67.66 347.55 3.23 -64.43 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.52 Total: 33.21 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.05 Total: 6.26 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -1.72 Total: -77.85 kcal Atomic # 8 Polarization: -66.03 SS G_CDS: -2.65 Total: -68.68 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -67.66 3.23 -64.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599332016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.516 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds