Wall clock time and date at job start Tue Mar 31 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33932 * 125.61785 * 2 1 4 4 C 1.34912 * 109.38187 * 180.12307 * 3 2 1 5 5 C 1.46662 * 125.98266 * 179.86592 * 4 3 2 6 6 O 1.21698 * 119.99718 * 175.03481 * 5 4 3 7 7 N 1.34782 * 120.00080 * 355.02521 * 5 4 3 8 8 C 1.46492 * 119.99896 * 5.49586 * 7 5 4 9 9 C 1.50697 * 109.47360 * 276.02699 * 8 7 5 10 10 H 1.07994 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00097 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00385 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00028 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46938 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47087 * 119.99697 * 13 11 9 16 16 H 1.48500 * 109.46891 * 239.99650 * 13 11 9 17 17 C 1.46494 * 119.99761 * 185.49725 * 7 5 4 18 18 C 1.52999 * 109.46979 * 265.05647 * 17 7 5 19 19 C 1.53000 * 117.52225 * 116.28636 * 18 17 7 20 20 C 1.52995 * 60.00092 * 107.48122 * 19 18 17 21 21 C 1.36541 * 108.02994 * 359.59697 * 4 3 2 22 22 C 1.35133 * 125.61281 * 179.67003 * 2 1 3 23 23 C 1.50694 * 126.44540 * 0.03904 * 22 2 1 24 24 O 1.42898 * 109.47442 * 180.02562 * 23 22 2 25 25 H 1.08997 * 109.47214 * 270.32289 * 1 2 3 26 26 H 1.09004 * 109.47001 * 30.33060 * 1 2 3 27 27 H 1.09004 * 109.47244 * 150.32521 * 1 2 3 28 28 H 1.09004 * 109.47186 * 36.02300 * 8 7 5 29 29 H 1.08996 * 109.47306 * 156.02285 * 8 7 5 30 30 H 0.96996 * 120.00087 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47019 * 145.05943 * 17 7 5 32 32 H 1.09002 * 109.47710 * 25.05489 * 17 7 5 33 33 H 1.09002 * 115.55359 * 330.58203 * 18 17 7 34 34 H 1.08995 * 117.50245 * 214.97077 * 19 18 17 35 35 H 1.08999 * 117.49566 * 359.97438 * 19 18 17 36 36 H 1.09003 * 117.50096 * 252.51347 * 20 19 18 37 37 H 1.09003 * 117.50075 * 107.48960 * 20 19 18 38 38 H 1.07992 * 126.65155 * 180.22175 * 21 4 3 39 39 H 1.09000 * 109.47144 * 300.02111 * 23 22 2 40 40 H 1.09003 * 109.47441 * 60.02508 * 23 22 2 41 41 H 0.96696 * 114.00169 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2870 1.0888 0.0000 4 6 3.5823 0.7116 -0.0027 5 6 4.7415 1.6101 -0.0064 6 8 5.8658 1.1530 0.0826 7 7 4.5614 2.9419 -0.1085 8 6 3.2076 3.5012 -0.0945 9 6 2.6241 3.4394 -1.4826 10 1 3.2040 3.0253 -2.2941 11 6 1.3504 3.9124 -1.7167 12 7 0.6443 4.4172 -0.7286 13 14 0.6274 3.8364 -3.4375 14 1 1.6167 3.2293 -4.3637 15 1 -0.6066 3.0106 -3.4199 16 1 0.2976 5.2095 -3.8969 17 6 5.7197 3.8301 -0.2335 18 6 6.1107 4.3559 1.1491 19 6 7.4857 3.9623 1.6923 20 6 7.2318 5.3947 1.2188 21 6 3.6251 -0.6532 0.0046 22 6 2.2939 -1.0986 0.0063 23 6 1.8297 -2.5322 0.0138 24 8 2.9646 -3.4004 0.0196 25 1 -0.3633 0.0058 1.0276 26 1 -0.3633 0.8870 -0.5190 27 1 -0.3634 -0.8929 -0.5088 28 1 2.5832 2.9245 0.5880 29 1 3.2464 4.5387 0.2374 30 1 -0.2519 4.7496 -0.8933 31 1 5.4664 4.6683 -0.8827 32 1 6.5563 3.2783 -0.6622 33 1 5.2941 4.4479 1.8653 34 1 7.5739 3.7952 2.7658 35 1 8.1120 3.3281 1.0648 36 1 7.6911 5.7033 0.2796 37 1 7.1527 6.1702 1.9807 38 1 4.5112 -1.2704 0.0081 39 1 1.2281 -2.7147 0.9042 40 1 1.2298 -2.7245 -0.8758 41 1 2.7403 -4.3410 0.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601036971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:17 Heat of formation + Delta-G solvation = -43.806440 kcal Electronic energy + Delta-G solvation = -24243.597603 eV Core-core repulsion = 20705.397479 eV Total energy + Delta-G solvation = -3538.200123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.06122 -38.95060 -36.89164 -36.83712 -34.78965 -32.92659 -32.44000 -31.41864 -28.21619 -27.49456 -26.49814 -24.82026 -23.05008 -22.08000 -21.45892 -20.39403 -19.90420 -18.66465 -17.08891 -16.81101 -16.40093 -15.93956 -15.74529 -14.99221 -14.65863 -14.47355 -14.36630 -14.23335 -13.65431 -13.34477 -13.12969 -12.77743 -12.53371 -12.42664 -12.22208 -11.97492 -11.63161 -11.36590 -11.31672 -11.24265 -11.10850 -10.89915 -10.63760 -10.38505 -10.30367 -10.06881 -9.69917 -9.60435 -9.38135 -9.05021 -8.51114 -7.94573 -7.61719 -6.12808 -4.17011 1.80206 2.77791 3.20956 3.29808 3.34640 3.37936 3.86984 3.95750 4.20006 4.28312 4.36750 5.07816 5.10602 5.17306 5.21152 5.25944 5.33136 5.36411 5.49691 5.54904 5.69855 5.77769 5.79128 5.86328 5.99758 6.07026 6.15916 6.19547 6.24506 6.38082 6.40235 6.55136 6.58803 6.77833 6.95343 7.29962 7.49657 7.65182 7.71658 7.81490 8.10755 8.25084 8.81099 8.93637 9.47720 10.94582 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.007331 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.053393 B = 3818.255711 C = 6023.396522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 O -0.097 6.097 4 C -0.058 4.058 5 C 0.599 3.401 6 O -0.554 6.554 7 N -0.585 5.585 8 C 0.234 3.766 9 C -0.522 4.522 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.150 3.850 18 C -0.161 4.161 19 C -0.175 4.175 20 C -0.180 4.180 21 C -0.117 4.117 22 C -0.216 4.216 23 C 0.158 3.842 24 O -0.566 6.566 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.271 -7.478 3.317 8.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 O 0.010 5.990 4 C -0.111 4.111 5 C 0.387 3.613 6 O -0.436 6.436 7 N -0.313 5.313 8 C 0.115 3.885 9 C -0.560 4.560 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.027 3.973 18 C -0.180 4.180 19 C -0.212 4.212 20 C -0.217 4.217 21 C -0.137 4.137 22 C -0.218 4.218 23 C 0.080 3.920 24 O -0.370 6.370 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.170 0.830 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.880 -6.676 3.389 7.720 hybrid contribution -0.945 -0.560 -0.975 1.469 sum 0.936 -7.236 2.415 7.686 Atomic orbital electron populations 1.20337 0.85548 1.04165 1.03345 1.22422 0.94243 0.84427 1.02376 1.84730 1.15098 1.31383 1.67792 1.21956 0.82953 0.93776 1.12387 1.16660 0.85734 0.81860 0.77020 1.90757 1.22746 1.76609 1.53456 1.48136 1.09561 1.04757 1.68850 1.19646 0.75735 0.94972 0.98188 1.21408 0.99828 1.40647 0.94160 0.92416 1.24822 0.96658 0.95028 0.96839 1.69939 1.11081 1.40986 1.30932 0.86589 0.79163 0.77798 0.84863 1.19774 1.20854 1.20910 1.20916 0.88806 0.93538 0.94024 1.22772 0.92486 1.02921 0.99841 1.22964 0.99768 0.97507 1.00941 1.22906 1.03446 0.92458 1.02903 1.21447 0.97587 0.92369 1.02341 1.19746 0.93622 0.94421 1.13981 1.20158 0.86897 0.85698 0.99247 1.86526 1.33159 1.19644 1.97717 0.90113 0.89433 0.90144 0.93286 0.94205 0.92819 0.89879 0.90475 0.87735 0.89454 0.88691 0.88901 0.89126 0.82983 0.92992 0.93003 0.77683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.21 36.01 0.37 -0.75 16 2 C 0.02 0.37 7.31 -35.41 -0.26 0.11 16 3 O -0.10 -2.20 6.43 5.00 0.03 -2.16 16 4 C -0.06 -1.29 6.67 -36.80 -0.25 -1.54 16 5 C 0.60 13.85 7.58 -12.86 -0.10 13.75 16 6 O -0.55 -13.24 16.43 5.19 0.09 -13.16 16 7 N -0.58 -13.02 2.47 -176.62 -0.44 -13.45 16 8 C 0.23 5.73 4.78 -5.20 -0.02 5.71 16 9 C -0.52 -13.78 8.01 -34.44 -0.28 -14.05 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -24.19 13.29 55.43 0.74 -23.46 16 13 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.15 2.86 5.68 -4.05 -0.02 2.84 16 18 C -0.16 -2.69 6.01 -90.62 -0.54 -3.24 16 19 C -0.17 -2.58 10.18 -26.73 -0.27 -2.85 16 20 C -0.18 -2.43 10.25 -26.73 -0.27 -2.70 16 21 C -0.12 -2.37 9.98 -39.39 -0.39 -2.76 16 22 C -0.22 -3.84 6.10 -104.93 -0.64 -4.48 16 23 C 0.16 2.06 7.08 36.00 0.25 2.31 16 24 O -0.57 -7.38 13.08 -35.23 -0.46 -7.84 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.05 1.28 5.71 -51.93 -0.30 0.98 16 29 H 0.04 1.01 8.03 -51.93 -0.42 0.59 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 32 H 0.08 1.46 7.09 -51.93 -0.37 1.09 16 33 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.15 3.04 7.97 -52.49 -0.42 2.62 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.38 2.72 9.12 45.56 0.42 3.13 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -31.57 351.04 -7.56 -39.13 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.26 Total: 5.96 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.52 Total: -5.94 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.30 Total: -36.91 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.34 Total: -23.16 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.57 -7.56 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.680 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds