Wall clock time and date at job start Tue Mar 31 2020 06:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33932 * 125.61785 * 2 1 4 4 C 1.34912 * 109.38187 * 180.12307 * 3 2 1 5 5 C 1.46662 * 125.98266 * 179.86592 * 4 3 2 6 6 O 1.21698 * 119.99718 * 175.03481 * 5 4 3 7 7 N 1.34782 * 120.00080 * 355.02521 * 5 4 3 8 8 C 1.46492 * 119.99896 * 5.49586 * 7 5 4 9 9 C 1.50697 * 109.47360 * 276.02699 * 8 7 5 10 10 H 1.07994 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00097 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00385 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 120.00028 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46938 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47087 * 119.99697 * 13 11 9 16 16 H 1.48500 * 109.46891 * 239.99650 * 13 11 9 17 17 C 1.46494 * 119.99761 * 185.49725 * 7 5 4 18 18 C 1.52999 * 109.46979 * 265.05647 * 17 7 5 19 19 C 1.53000 * 117.52225 * 116.28636 * 18 17 7 20 20 C 1.52995 * 60.00092 * 107.48122 * 19 18 17 21 21 C 1.36541 * 108.02994 * 359.59697 * 4 3 2 22 22 C 1.35133 * 125.61281 * 179.67003 * 2 1 3 23 23 C 1.50694 * 126.44540 * 0.03904 * 22 2 1 24 24 O 1.42898 * 109.47442 * 180.02562 * 23 22 2 25 25 H 1.08997 * 109.47214 * 270.32289 * 1 2 3 26 26 H 1.09004 * 109.47001 * 30.33060 * 1 2 3 27 27 H 1.09004 * 109.47244 * 150.32521 * 1 2 3 28 28 H 1.09004 * 109.47186 * 36.02300 * 8 7 5 29 29 H 1.08996 * 109.47306 * 156.02285 * 8 7 5 30 30 H 0.96996 * 120.00087 * 180.02562 * 12 11 9 31 31 H 1.09002 * 109.47019 * 145.05943 * 17 7 5 32 32 H 1.09002 * 109.47710 * 25.05489 * 17 7 5 33 33 H 1.09002 * 115.55359 * 330.58203 * 18 17 7 34 34 H 1.08995 * 117.50245 * 214.97077 * 19 18 17 35 35 H 1.08999 * 117.49566 * 359.97438 * 19 18 17 36 36 H 1.09003 * 117.50096 * 252.51347 * 20 19 18 37 37 H 1.09003 * 117.50075 * 107.48960 * 20 19 18 38 38 H 1.07992 * 126.65155 * 180.22175 * 21 4 3 39 39 H 1.09000 * 109.47144 * 300.02111 * 23 22 2 40 40 H 1.09003 * 109.47441 * 60.02508 * 23 22 2 41 41 H 0.96696 * 114.00169 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2870 1.0888 0.0000 4 6 3.5823 0.7116 -0.0027 5 6 4.7415 1.6101 -0.0064 6 8 5.8658 1.1530 0.0826 7 7 4.5614 2.9419 -0.1085 8 6 3.2076 3.5012 -0.0945 9 6 2.6241 3.4394 -1.4826 10 1 3.2040 3.0253 -2.2941 11 6 1.3504 3.9124 -1.7167 12 7 0.6443 4.4172 -0.7286 13 14 0.6274 3.8364 -3.4375 14 1 1.6167 3.2293 -4.3637 15 1 -0.6066 3.0106 -3.4199 16 1 0.2976 5.2095 -3.8969 17 6 5.7197 3.8301 -0.2335 18 6 6.1107 4.3559 1.1491 19 6 7.4857 3.9623 1.6923 20 6 7.2318 5.3947 1.2188 21 6 3.6251 -0.6532 0.0046 22 6 2.2939 -1.0986 0.0063 23 6 1.8297 -2.5322 0.0138 24 8 2.9646 -3.4004 0.0196 25 1 -0.3633 0.0058 1.0276 26 1 -0.3633 0.8870 -0.5190 27 1 -0.3634 -0.8929 -0.5088 28 1 2.5832 2.9245 0.5880 29 1 3.2464 4.5387 0.2374 30 1 -0.2519 4.7496 -0.8933 31 1 5.4664 4.6683 -0.8827 32 1 6.5563 3.2783 -0.6622 33 1 5.2941 4.4479 1.8653 34 1 7.5739 3.7952 2.7658 35 1 8.1120 3.3281 1.0648 36 1 7.6911 5.7033 0.2796 37 1 7.1527 6.1702 1.9807 38 1 4.5112 -1.2704 0.0081 39 1 1.2281 -2.7147 0.9042 40 1 1.2298 -2.7245 -0.8758 41 1 2.7403 -4.3410 0.0250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601036971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:17 Heat of formation + Delta-G solvation = -64.244803 kcal Electronic energy + Delta-G solvation = -24244.483877 eV Core-core repulsion = 20705.397479 eV Total energy + Delta-G solvation = -3539.086397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.60535 -40.66066 -38.27516 -37.86437 -36.54462 -34.47685 -34.26376 -32.86113 -29.87601 -29.05750 -27.97460 -26.19552 -25.00134 -23.24115 -22.93583 -21.88965 -21.36259 -20.21199 -18.72269 -18.18597 -18.03677 -17.58381 -17.32774 -16.64201 -16.16136 -16.08633 -15.73398 -15.45249 -15.00504 -14.80686 -14.60746 -14.34442 -13.99842 -13.98240 -13.68134 -13.58327 -13.28387 -12.94226 -12.71578 -12.61130 -12.56545 -12.36503 -12.34482 -12.14324 -11.76127 -11.42729 -11.39781 -11.16957 -10.84374 -10.56586 -10.44736 -9.65072 -9.19174 -8.16460 -6.27964 0.17389 1.33252 1.36608 1.40059 1.50322 1.83692 2.18230 2.31328 2.44279 2.92708 3.13976 3.31385 3.61000 3.80118 3.89026 3.99033 4.10239 4.14164 4.34188 4.39730 4.48585 4.57415 4.60612 4.72880 4.73249 4.76575 4.78925 4.79148 4.85729 4.98034 4.99879 5.12028 5.24292 5.26520 5.31270 5.55307 5.66558 5.75561 6.07095 6.14657 6.41085 6.79171 7.01536 7.11182 7.40251 8.90575 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.007331 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.053393 B = 3818.255711 C = 6023.396522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 O -0.128 6.128 4 C -0.099 4.099 5 C 0.592 3.408 6 O -0.572 6.572 7 N -0.587 5.587 8 C 0.254 3.746 9 C -0.530 4.530 10 H 0.040 0.960 11 C 0.033 3.967 12 N -0.913 5.913 13 Si 0.944 3.056 14 H -0.280 1.280 15 H -0.269 1.269 16 H -0.276 1.276 17 C 0.149 3.851 18 C -0.188 4.188 19 C -0.172 4.172 20 C -0.150 4.150 21 C -0.116 4.116 22 C -0.214 4.214 23 C 0.159 3.841 24 O -0.590 6.590 25 H 0.103 0.897 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.033 0.967 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -8.495 3.078 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 O -0.022 6.022 4 C -0.151 4.151 5 C 0.381 3.619 6 O -0.456 6.456 7 N -0.315 5.315 8 C 0.134 3.866 9 C -0.569 4.569 10 H 0.058 0.942 11 C -0.167 4.167 12 N -0.552 5.552 13 Si 0.770 3.230 14 H -0.205 1.205 15 H -0.194 1.194 16 H -0.202 1.202 17 C 0.026 3.974 18 C -0.207 4.207 19 C -0.209 4.209 20 C -0.187 4.187 21 C -0.137 4.137 22 C -0.215 4.215 23 C 0.082 3.918 24 O -0.399 6.399 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.139 0.861 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.168 0.832 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.846 -7.705 3.156 8.369 hybrid contribution -0.637 -0.320 -0.874 1.128 sum 0.209 -8.026 2.282 8.346 Atomic orbital electron populations 1.20565 0.82494 1.04963 1.05010 1.23348 0.95949 0.83849 1.01195 1.84667 1.15340 1.33461 1.68723 1.21953 0.83100 0.94484 1.15543 1.16887 0.86079 0.82149 0.76775 1.90712 1.23399 1.76867 1.54650 1.48146 1.09615 1.05081 1.68656 1.19230 0.76651 0.93692 0.97043 1.21410 1.00242 1.40968 0.94257 0.94216 1.25424 0.96727 0.94481 1.00077 1.70013 1.11469 1.41218 1.32514 0.85721 0.78559 0.78092 0.80618 1.20525 1.19436 1.20197 1.21045 0.87623 0.92921 0.95764 1.22593 0.93331 1.06541 0.98278 1.23012 0.97697 0.98669 1.01507 1.23033 0.99779 0.91992 1.03901 1.21642 0.99044 0.91633 1.01337 1.20286 0.91958 0.97017 1.12247 1.20304 0.86991 0.82723 1.01802 1.86459 1.33810 1.21760 1.97854 0.87881 0.91688 0.86142 0.94963 0.95616 0.92365 0.89950 0.90706 0.89257 0.88330 0.89142 0.87501 0.87082 0.83201 0.90043 0.90445 0.74696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.21 71.24 0.73 -1.25 16 2 C 0.01 0.38 7.31 24.97 0.18 0.57 16 3 O -0.13 -5.94 6.43 -5.03 -0.03 -5.97 16 4 C -0.10 -4.59 6.67 24.07 0.16 -4.43 16 5 C 0.59 28.72 7.58 86.44 0.66 29.37 16 6 O -0.57 -28.55 16.43 -4.34 -0.07 -28.62 16 7 N -0.59 -27.49 2.47 -830.92 -2.05 -29.54 16 8 C 0.25 13.05 4.78 85.63 0.41 13.46 16 9 C -0.53 -28.86 8.01 25.60 0.21 -28.65 16 10 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 11 C 0.03 1.78 5.46 84.65 0.46 2.24 16 12 N -0.91 -50.00 13.29 21.45 0.28 -49.71 16 13 Si 0.94 42.29 29.54 68.60 2.03 44.31 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 C 0.15 5.89 5.68 86.38 0.49 6.38 16 18 C -0.19 -6.41 6.01 -10.79 -0.06 -6.47 16 19 C -0.17 -4.99 10.18 30.59 0.31 -4.67 16 20 C -0.15 -3.82 10.25 30.59 0.31 -3.51 16 21 C -0.12 -4.77 9.98 22.39 0.22 -4.54 16 22 C -0.21 -7.30 6.10 -20.06 -0.12 -7.42 16 23 C 0.16 3.60 7.08 71.23 0.50 4.11 16 24 O -0.59 -13.80 13.08 -148.98 -1.95 -15.75 16 25 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.12 2.21 7.86 -2.38 -0.02 2.19 16 28 H 0.03 1.79 5.71 -2.38 -0.01 1.77 16 29 H 0.03 1.37 8.03 -2.39 -0.02 1.36 16 30 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.08 3.18 8.11 -2.39 -0.02 3.16 16 32 H 0.07 2.95 7.09 -2.39 -0.02 2.93 16 33 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.15 6.11 7.97 -2.91 -0.02 6.09 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.40 4.50 9.12 -74.06 -0.68 3.82 16 Total: -1.00 -70.31 351.04 3.03 -67.28 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.37 Total: 22.83 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 4.46 Total: -4.83 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -1.77 Total: -79.26 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -2.05 Total: -50.34 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -70.31 3.03 -67.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601036971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.035 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds