Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33925 * 125.61528 * 2 1 4 4 C 1.34913 * 109.38919 * 180.02562 * 3 2 1 5 5 C 1.46660 * 125.99284 * 180.02562 * 4 3 2 6 6 O 1.21688 * 119.99942 * 186.48703 * 5 4 3 7 7 N 1.34772 * 119.99570 * 6.48083 * 5 4 3 8 8 C 1.46926 * 120.62784 * 186.19776 * 7 5 4 9 9 C 1.53625 * 108.54477 * 126.36901 * 8 7 5 10 10 C 1.53038 * 109.24091 * 54.85805 * 9 8 7 11 11 C 1.50696 * 109.44941 * 178.49847 * 10 9 8 12 12 H 1.08003 * 120.00394 * 120.05691 * 11 10 9 13 13 C 1.37873 * 120.00143 * 300.06049 * 11 10 9 14 14 N 1.31513 * 120.00668 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00012 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46841 * 90.00168 * 15 13 11 17 17 H 1.48493 * 109.47341 * 210.00261 * 15 13 11 18 18 H 1.48502 * 109.47001 * 330.00397 * 15 13 11 19 19 C 1.53049 * 109.53582 * 298.50947 * 10 9 8 20 20 C 1.46927 * 120.63677 * 6.47895 * 7 5 4 21 21 C 1.36548 * 108.01961 * 359.76061 * 4 3 2 22 22 C 1.35130 * 125.61967 * 180.02562 * 2 1 3 23 23 C 1.50708 * 126.44130 * 359.95908 * 22 2 1 24 24 O 1.42892 * 109.46920 * 180.02562 * 23 22 2 25 25 H 1.09001 * 109.47273 * 269.99748 * 1 2 3 26 26 H 1.08992 * 109.47237 * 30.00053 * 1 2 3 27 27 H 1.09002 * 109.46859 * 150.00235 * 1 2 3 28 28 H 1.09007 * 109.58720 * 246.20420 * 8 7 5 29 29 H 1.09002 * 109.58567 * 6.62374 * 8 7 5 30 30 H 1.08990 * 109.63462 * 294.86352 * 9 8 7 31 31 H 1.09000 * 109.43043 * 174.72142 * 9 8 7 32 32 H 1.09001 * 109.46361 * 58.53199 * 10 9 8 33 33 H 0.97000 * 120.00826 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.49591 * 301.41406 * 19 10 9 35 35 H 1.08998 * 109.49570 * 181.31537 * 19 10 9 36 36 H 1.09004 * 109.58227 * 353.36801 * 20 7 5 37 37 H 1.08994 * 109.58795 * 113.65381 * 20 7 5 38 38 H 1.07998 * 126.64470 * 180.23174 * 21 4 3 39 39 H 1.09004 * 109.46663 * 60.00361 * 23 22 2 40 40 H 1.08994 * 109.47068 * 300.00442 * 23 22 2 41 41 H 0.96704 * 113.99967 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0887 0.0000 4 6 3.5823 0.7118 -0.0006 5 6 4.7414 1.6103 -0.0002 6 8 5.8637 1.1555 -0.1199 7 7 4.5634 2.9396 0.1325 8 6 5.6980 3.8636 -0.0005 9 6 5.3418 4.9266 -1.0509 10 6 4.0249 5.6010 -0.6594 11 6 3.6898 6.6703 -1.6671 12 1 2.7703 6.6122 -2.2305 13 6 4.5572 7.7227 -1.8698 14 7 4.2646 8.6561 -2.7488 15 14 6.1475 7.8235 -0.8949 16 1 7.2257 7.1171 -1.6322 17 1 6.5252 9.2476 -0.7099 18 1 5.9556 7.1858 0.4324 19 6 2.9048 4.5585 -0.6306 20 6 3.2324 3.4919 0.4190 21 6 3.6250 -0.6530 0.0045 22 6 2.2940 -1.0985 -0.0005 23 6 1.8298 -2.5323 -0.0003 24 8 2.9648 -3.4003 -0.0004 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 5.8922 4.3442 0.9584 29 1 6.5822 3.3128 -0.3213 30 1 5.2326 4.4547 -2.0272 31 1 6.1343 5.6737 -1.0939 32 1 4.1271 6.0517 0.3278 33 1 4.8746 9.3967 -2.8912 34 1 2.8186 4.0900 -1.6109 35 1 1.9629 5.0436 -0.3746 36 1 2.4893 2.6956 0.3750 37 1 3.2290 3.9404 1.4123 38 1 4.5113 -1.2702 0.0089 39 1 1.2285 -2.7196 -0.8900 40 1 1.2295 -2.7197 0.8900 41 1 2.7406 -4.3410 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = -60.052528 kcal Electronic energy + Delta-G solvation = -23958.382880 eV Core-core repulsion = 20419.478274 eV Total energy + Delta-G solvation = -3538.904607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.89112 -39.61712 -37.29786 -37.11487 -33.98044 -33.35719 -32.16538 -31.45322 -30.64717 -28.18527 -26.83695 -25.72510 -23.19345 -22.87917 -21.57213 -20.89293 -19.99157 -18.87136 -17.54518 -17.24767 -16.82465 -16.59377 -15.99869 -15.40912 -15.07518 -14.80224 -14.51543 -14.27952 -13.77274 -13.56278 -13.44810 -13.25196 -13.21271 -12.91031 -12.62041 -12.43868 -12.27652 -11.97419 -11.82658 -11.64358 -10.99650 -10.82978 -10.75347 -10.19028 -10.07805 -10.02231 -9.74831 -9.70205 -9.29931 -9.09814 -8.57269 -8.55489 -8.18045 -6.10010 -4.09563 1.05230 2.15268 2.50546 3.23164 3.26863 3.31940 3.35032 3.38842 3.83123 4.37921 4.40041 4.56961 4.85001 4.92310 5.05010 5.08379 5.16985 5.19046 5.20623 5.42952 5.53192 5.61611 5.66257 5.75173 5.80252 5.82156 5.92298 6.10502 6.25663 6.29918 6.34447 6.55143 6.64019 6.76172 6.83365 6.91715 7.15432 7.29828 7.46262 7.61671 7.72616 8.22821 8.48651 8.93548 9.52162 11.03217 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.003895 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.169359 B = 7187.605238 C = 7872.354744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 O -0.145 6.145 4 C -0.073 4.073 5 C 0.598 3.402 6 O -0.532 6.532 7 N -0.591 5.591 8 C 0.108 3.892 9 C -0.134 4.134 10 C 0.014 3.986 11 C -0.513 4.513 12 H 0.074 0.926 13 C 0.069 3.931 14 N -0.901 5.901 15 Si 0.885 3.115 16 H -0.277 1.277 17 H -0.297 1.297 18 H -0.265 1.265 19 C -0.111 4.111 20 C 0.088 3.912 21 C -0.095 4.095 22 C -0.200 4.200 23 C 0.153 3.847 24 O -0.566 6.566 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.161 0.839 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 -20.915 7.886 23.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.039 4.039 3 O -0.042 6.042 4 C -0.124 4.124 5 C 0.385 3.615 6 O -0.412 6.412 7 N -0.322 5.322 8 C -0.014 4.014 9 C -0.172 4.172 10 C -0.005 4.005 11 C -0.551 4.551 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.224 1.224 18 H -0.190 1.190 19 C -0.149 4.149 20 C -0.034 4.034 21 C -0.115 4.115 22 C -0.201 4.201 23 C 0.075 3.925 24 O -0.371 6.371 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.179 0.821 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -7.284 -20.056 7.740 22.698 hybrid contribution 0.638 -0.356 0.349 0.809 sum -6.646 -20.412 8.089 22.940 Atomic orbital electron populations 1.20429 0.84678 1.04597 1.03903 1.22567 0.94241 0.84228 1.02867 1.84278 1.16241 1.32658 1.71045 1.22137 0.81835 0.94474 1.13921 1.16700 0.85957 0.81331 0.77477 1.90835 1.22493 1.75718 1.52142 1.48059 1.10892 1.04936 1.68341 1.21954 0.88242 0.91002 1.00156 1.22465 1.00512 0.96262 0.97983 1.19156 0.90271 0.93431 0.97678 1.21021 1.07374 1.05246 1.21487 0.90823 1.25035 0.98038 0.95409 0.94774 1.69892 1.37355 1.12305 1.34327 0.86885 0.84158 0.76076 0.81374 1.20434 1.22438 1.18960 1.21804 1.00100 0.95489 0.97475 1.22481 0.82876 0.98406 0.99612 1.21632 0.98100 0.92253 0.99548 1.19888 0.93459 0.94963 1.11785 1.20205 0.87208 0.85266 0.99774 1.86508 1.32840 1.20059 1.97716 0.89521 0.89669 0.89352 0.91667 0.89685 0.91564 0.92259 0.95327 0.92632 0.92189 0.91186 0.88262 0.91510 0.82145 0.92487 0.92520 0.77076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.21 36.00 0.37 -0.15 16 2 C 0.01 0.14 7.31 -35.42 -0.26 -0.12 16 3 O -0.15 -2.05 7.13 5.01 0.04 -2.01 16 4 C -0.07 -1.16 6.83 -36.79 -0.25 -1.42 16 5 C 0.60 11.03 7.65 -12.86 -0.10 10.93 16 6 O -0.53 -11.03 16.31 5.20 0.08 -10.95 16 7 N -0.59 -10.73 2.97 -174.05 -0.52 -11.24 16 8 C 0.11 2.04 6.44 -3.48 -0.02 2.02 16 9 C -0.13 -2.90 4.86 -26.39 -0.13 -3.03 16 10 C 0.01 0.31 1.65 -91.73 -0.15 0.16 16 11 C -0.51 -14.10 9.14 -34.44 -0.31 -14.42 16 12 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 13 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 15 Si 0.88 21.64 24.38 -169.99 -4.14 17.50 16 16 H -0.28 -6.64 6.86 56.52 0.39 -6.26 16 17 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.11 6.53 56.52 0.37 -5.74 16 19 C -0.11 -2.11 5.30 -26.61 -0.14 -2.25 16 20 C 0.09 1.44 6.32 -3.71 -0.02 1.42 16 21 C -0.09 -1.40 9.98 -39.39 -0.39 -1.79 16 22 C -0.20 -2.36 6.10 -104.93 -0.64 -3.00 16 23 C 0.15 1.25 7.08 36.01 0.26 1.50 16 24 O -0.57 -5.08 13.08 -35.23 -0.46 -5.55 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.39 7.86 -51.93 -0.41 -0.02 16 28 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 29 H 0.08 1.59 7.04 -51.93 -0.37 1.23 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.35 3.24 -51.93 -0.17 1.18 16 32 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.49 3.79 -55.04 -0.21 1.28 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.16 2.42 7.98 -52.49 -0.42 2.00 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 1.37 9.12 45.56 0.42 1.78 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -34.30 328.48 -6.11 -40.41 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.93 Total: 1.78 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.90 Total: -8.28 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.26 Total: -37.85 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.34 Total: -18.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.30 -6.11 -40.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.647 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds