Wall clock time and date at job start Tue Mar 31 2020 06:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33925 * 125.61528 * 2 1 4 4 C 1.34913 * 109.38919 * 180.02562 * 3 2 1 5 5 C 1.46660 * 125.99284 * 180.02562 * 4 3 2 6 6 O 1.21688 * 119.99942 * 186.48703 * 5 4 3 7 7 N 1.34772 * 119.99570 * 6.48083 * 5 4 3 8 8 C 1.46926 * 120.62784 * 186.19776 * 7 5 4 9 9 C 1.53625 * 108.54477 * 126.36901 * 8 7 5 10 10 C 1.53038 * 109.24091 * 54.85805 * 9 8 7 11 11 C 1.50696 * 109.44941 * 178.49847 * 10 9 8 12 12 H 1.08003 * 120.00394 * 120.05691 * 11 10 9 13 13 C 1.37873 * 120.00143 * 300.06049 * 11 10 9 14 14 N 1.31513 * 120.00668 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00012 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46841 * 90.00168 * 15 13 11 17 17 H 1.48493 * 109.47341 * 210.00261 * 15 13 11 18 18 H 1.48502 * 109.47001 * 330.00397 * 15 13 11 19 19 C 1.53049 * 109.53582 * 298.50947 * 10 9 8 20 20 C 1.46927 * 120.63677 * 6.47895 * 7 5 4 21 21 C 1.36548 * 108.01961 * 359.76061 * 4 3 2 22 22 C 1.35130 * 125.61967 * 180.02562 * 2 1 3 23 23 C 1.50708 * 126.44130 * 359.95908 * 22 2 1 24 24 O 1.42892 * 109.46920 * 180.02562 * 23 22 2 25 25 H 1.09001 * 109.47273 * 269.99748 * 1 2 3 26 26 H 1.08992 * 109.47237 * 30.00053 * 1 2 3 27 27 H 1.09002 * 109.46859 * 150.00235 * 1 2 3 28 28 H 1.09007 * 109.58720 * 246.20420 * 8 7 5 29 29 H 1.09002 * 109.58567 * 6.62374 * 8 7 5 30 30 H 1.08990 * 109.63462 * 294.86352 * 9 8 7 31 31 H 1.09000 * 109.43043 * 174.72142 * 9 8 7 32 32 H 1.09001 * 109.46361 * 58.53199 * 10 9 8 33 33 H 0.97000 * 120.00826 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.49591 * 301.41406 * 19 10 9 35 35 H 1.08998 * 109.49570 * 181.31537 * 19 10 9 36 36 H 1.09004 * 109.58227 * 353.36801 * 20 7 5 37 37 H 1.08994 * 109.58795 * 113.65381 * 20 7 5 38 38 H 1.07998 * 126.64470 * 180.23174 * 21 4 3 39 39 H 1.09004 * 109.46663 * 60.00361 * 23 22 2 40 40 H 1.08994 * 109.47068 * 300.00442 * 23 22 2 41 41 H 0.96704 * 113.99967 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2869 1.0887 0.0000 4 6 3.5823 0.7118 -0.0006 5 6 4.7414 1.6103 -0.0002 6 8 5.8637 1.1555 -0.1199 7 7 4.5634 2.9396 0.1325 8 6 5.6980 3.8636 -0.0005 9 6 5.3418 4.9266 -1.0509 10 6 4.0249 5.6010 -0.6594 11 6 3.6898 6.6703 -1.6671 12 1 2.7703 6.6122 -2.2305 13 6 4.5572 7.7227 -1.8698 14 7 4.2646 8.6561 -2.7488 15 14 6.1475 7.8235 -0.8949 16 1 7.2257 7.1171 -1.6322 17 1 6.5252 9.2476 -0.7099 18 1 5.9556 7.1858 0.4324 19 6 2.9048 4.5585 -0.6306 20 6 3.2324 3.4919 0.4190 21 6 3.6250 -0.6530 0.0045 22 6 2.2940 -1.0985 -0.0005 23 6 1.8298 -2.5323 -0.0003 24 8 2.9648 -3.4003 -0.0004 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 5.8922 4.3442 0.9584 29 1 6.5822 3.3128 -0.3213 30 1 5.2326 4.4547 -2.0272 31 1 6.1343 5.6737 -1.0939 32 1 4.1271 6.0517 0.3278 33 1 4.8746 9.3967 -2.8912 34 1 2.8186 4.0900 -1.6109 35 1 1.9629 5.0436 -0.3746 36 1 2.4893 2.6956 0.3750 37 1 3.2290 3.9404 1.4123 38 1 4.5113 -1.2702 0.0089 39 1 1.2285 -2.7196 -0.8900 40 1 1.2295 -2.7197 0.8900 41 1 2.7406 -4.3410 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:01 Heat of formation + Delta-G solvation = -85.918062 kcal Electronic energy + Delta-G solvation = -23959.504494 eV Core-core repulsion = 20419.478274 eV Total energy + Delta-G solvation = -3540.026220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.90677 -41.04788 -38.70948 -37.90336 -35.51408 -34.53972 -33.50245 -32.98659 -32.11340 -29.14762 -28.24838 -26.84189 -24.80914 -24.29500 -22.83937 -22.09421 -21.27587 -20.27417 -18.89530 -18.49660 -18.15887 -17.67153 -17.39981 -16.60149 -16.50783 -16.13522 -15.54368 -15.34262 -15.20448 -14.92711 -14.76987 -14.51832 -14.27444 -14.16928 -13.99611 -13.69788 -13.59590 -13.40896 -12.89243 -12.73354 -12.50358 -12.35738 -12.12940 -11.75802 -11.56409 -11.52070 -11.50389 -11.14705 -10.96218 -10.67755 -10.60165 -9.83107 -9.34556 -8.30545 -6.34459 -0.06199 1.19657 1.30767 1.35039 1.42070 1.47000 1.97412 2.03158 2.31551 3.04580 3.23391 3.32798 3.75068 3.94207 4.00298 4.11239 4.13398 4.18165 4.28790 4.36530 4.42740 4.46498 4.59867 4.62947 4.69666 4.72991 4.76772 4.84562 4.90652 4.91840 4.98207 5.07870 5.16919 5.32470 5.42339 5.54234 5.64222 5.68359 5.84462 6.24497 6.29712 6.72618 6.84346 6.97994 7.31105 8.86171 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.003895 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.169359 B = 7187.605238 C = 7872.354744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.029 3.971 3 O -0.156 6.156 4 C -0.107 4.107 5 C 0.596 3.404 6 O -0.566 6.566 7 N -0.596 5.596 8 C 0.114 3.886 9 C -0.130 4.130 10 C 0.013 3.987 11 C -0.517 4.517 12 H 0.035 0.965 13 C 0.011 3.989 14 N -0.951 5.951 15 Si 0.944 3.056 16 H -0.270 1.270 17 H -0.299 1.299 18 H -0.237 1.237 19 C -0.104 4.104 20 C 0.095 3.905 21 C -0.096 4.096 22 C -0.213 4.213 23 C 0.152 3.848 24 O -0.594 6.594 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.116 0.884 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.474 -23.180 9.890 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 O -0.053 6.053 4 C -0.157 4.157 5 C 0.386 3.614 6 O -0.448 6.448 7 N -0.327 5.327 8 C -0.008 4.008 9 C -0.168 4.168 10 C -0.006 4.006 11 C -0.555 4.555 12 H 0.053 0.947 13 C -0.186 4.186 14 N -0.591 5.591 15 Si 0.771 3.229 16 H -0.197 1.197 17 H -0.227 1.227 18 H -0.161 1.161 19 C -0.142 4.142 20 C -0.025 4.025 21 C -0.117 4.117 22 C -0.215 4.215 23 C 0.075 3.925 24 O -0.403 6.403 25 H 0.128 0.872 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.167 0.833 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.623 -22.360 9.761 25.877 hybrid contribution 0.864 0.246 -0.354 0.965 sum -7.760 -22.114 9.406 25.253 Atomic orbital electron populations 1.20751 0.80942 1.06154 1.05815 1.23510 0.95960 0.83099 0.99669 1.84164 1.15616 1.34079 1.71491 1.21645 0.82153 0.94287 1.17642 1.16974 0.86391 0.81490 0.76565 1.90797 1.24023 1.76315 1.53693 1.48119 1.11179 1.04935 1.68420 1.21826 0.88651 0.90384 0.99955 1.22316 0.99496 0.96757 0.98222 1.19134 0.92163 0.93143 0.96173 1.21356 1.05798 1.06612 1.21704 0.94713 1.25900 1.01799 0.95046 0.95888 1.70045 1.39045 1.13398 1.36627 0.85911 0.79760 0.76079 0.81177 1.19675 1.22683 1.16057 1.21686 0.99257 0.95368 0.97887 1.22509 0.82643 0.98102 0.99284 1.21762 0.99403 0.91879 0.98620 1.20374 0.91989 0.97410 1.11699 1.20395 0.87083 0.82882 1.02106 1.86451 1.33999 1.21997 1.97869 0.87189 0.89357 0.86532 0.89734 0.89753 0.93278 0.93065 0.94625 0.92613 0.93764 0.90292 0.86395 0.89492 0.83349 0.90163 0.89831 0.74543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.21 71.23 0.73 0.04 16 2 C 0.03 0.57 7.31 24.97 0.18 0.75 16 3 O -0.16 -4.11 7.13 -4.97 -0.04 -4.14 16 4 C -0.11 -3.36 6.83 24.08 0.16 -3.19 16 5 C 0.60 21.89 7.65 86.44 0.66 22.55 16 6 O -0.57 -23.77 16.31 -4.31 -0.07 -23.84 16 7 N -0.60 -21.00 2.97 -822.79 -2.44 -23.44 16 8 C 0.11 4.15 6.44 86.51 0.56 4.71 16 9 C -0.13 -5.54 4.86 30.82 0.15 -5.39 16 10 C 0.01 0.57 1.65 -11.51 -0.02 0.55 16 11 C -0.52 -29.06 9.14 25.60 0.23 -28.83 16 12 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 13 C 0.01 0.61 5.45 84.65 0.46 1.07 16 14 N -0.95 -59.63 13.96 21.45 0.30 -59.34 16 15 Si 0.94 44.52 24.38 68.60 1.67 46.19 16 16 H -0.27 -12.37 6.86 99.48 0.68 -11.68 16 17 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 18 H -0.24 -10.05 6.53 99.48 0.65 -9.40 16 19 C -0.10 -3.89 5.30 30.67 0.16 -3.73 16 20 C 0.10 2.95 6.32 86.36 0.55 3.50 16 21 C -0.10 -2.76 9.98 22.39 0.22 -2.54 16 22 C -0.21 -4.51 6.10 -20.06 -0.12 -4.63 16 23 C 0.15 1.93 7.08 71.24 0.50 2.44 16 24 O -0.59 -9.28 13.08 -148.98 -1.95 -11.23 16 25 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.12 0.40 7.86 -2.39 -0.02 0.38 16 28 H 0.08 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.08 3.11 7.04 -2.39 -0.02 3.09 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.26 3.24 -2.39 -0.01 2.25 16 32 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 33 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.12 3.29 3.79 -51.62 -0.20 3.09 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.15 4.55 7.98 -2.91 -0.02 4.53 16 39 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.40 1.84 9.12 -74.05 -0.68 1.17 16 Total: -1.00 -77.66 328.48 2.03 -75.63 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.11 Total: 12.86 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 4.43 Total: -12.70 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.14 Total: -82.78 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -2.05 Total: -39.21 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.19 kcal Total: -77.66 2.03 -75.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -77.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds