Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33924 * 125.61649 * 2 1 4 4 C 1.34910 * 109.38779 * 179.97438 * 3 2 1 5 5 C 1.46661 * 125.99025 * 179.97438 * 4 3 2 6 6 O 1.21698 * 119.99859 * 172.75477 * 5 4 3 7 7 N 1.34771 * 119.99973 * 352.76138 * 5 4 3 8 8 C 1.46930 * 120.63319 * 352.64093 * 7 5 4 9 9 C 1.53186 * 108.89477 * 233.67866 * 8 7 5 10 10 C 1.53041 * 109.31106 * 305.29304 * 9 8 7 11 11 C 1.53042 * 109.54048 * 61.36766 * 10 9 8 12 12 H 1.08995 * 109.49568 * 58.61518 * 11 10 9 13 13 C 1.50696 * 109.49604 * 178.68614 * 11 10 9 14 14 H 1.07998 * 120.00358 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99666 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99867 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99910 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46772 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47035 * 119.99689 * 17 15 13 20 20 H 1.48496 * 109.47005 * 239.99951 * 17 15 13 21 21 C 1.47208 * 120.81522 * 172.78237 * 7 5 4 22 22 C 1.36548 * 108.02255 * 0.22696 * 4 3 2 23 23 C 1.35132 * 125.61752 * 179.97438 * 2 1 3 24 24 C 1.50704 * 126.44032 * 0.02562 * 23 2 1 25 25 O 1.42900 * 109.46965 * 179.97438 * 24 23 2 26 26 H 1.08996 * 109.47082 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46609 * 119.97605 * 1 2 3 28 28 H 1.08994 * 109.47140 * 239.97575 * 1 2 3 29 29 H 1.08997 * 109.58442 * 113.81435 * 8 7 5 30 30 H 1.09001 * 109.58447 * 353.53824 * 8 7 5 31 31 H 1.08999 * 109.49881 * 65.24007 * 9 8 7 32 32 H 1.08997 * 109.49747 * 185.34047 * 9 8 7 33 33 H 1.09004 * 109.45672 * 181.38625 * 10 9 8 34 34 H 1.08997 * 109.46196 * 301.34269 * 10 9 8 35 35 H 0.97000 * 119.99524 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.53136 * 6.53743 * 21 7 5 37 37 H 1.09003 * 109.67593 * 246.23347 * 21 7 5 38 38 H 1.07993 * 126.64665 * 179.77120 * 22 4 3 39 39 H 1.08997 * 109.47193 * 299.99988 * 24 23 2 40 40 H 1.09000 * 109.47218 * 59.99914 * 24 23 2 41 41 H 0.96696 * 113.99554 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2870 1.0887 0.0000 4 6 3.5823 0.7117 0.0006 5 6 4.7415 1.6102 0.0002 6 8 5.8629 1.1567 0.1337 7 7 4.5647 2.9380 -0.1478 8 6 3.2399 3.4857 -0.4698 9 6 3.3576 4.3687 -1.7160 10 6 4.4342 5.4313 -1.4835 11 6 5.7835 4.7495 -1.2455 12 1 6.0357 4.1314 -2.1071 13 6 6.8486 5.7971 -1.0487 14 1 6.5897 6.8448 -1.0896 15 6 8.1538 5.4181 -0.8163 16 7 8.4689 4.1423 -0.7659 17 14 9.4743 6.7168 -0.5730 18 1 8.8654 8.0673 -0.6764 19 1 10.0895 6.5520 0.7684 20 1 10.5178 6.5635 -1.6184 21 6 5.6932 3.8708 0.0061 22 6 3.6251 -0.6531 -0.0042 23 6 2.2940 -1.0985 0.0005 24 6 1.8298 -2.5323 0.0006 25 8 2.9648 -3.4004 0.0006 26 1 -0.3633 1.0276 0.0005 27 1 -0.3632 -0.5135 -0.8902 28 1 -0.3633 -0.5142 0.8897 29 1 2.8776 4.0819 0.3676 30 1 2.5446 2.6692 -0.6648 31 1 3.6326 3.7537 -2.5730 32 1 2.4016 4.8554 -1.9087 33 1 4.5028 6.0764 -2.3595 34 1 4.1710 6.0301 -0.6116 35 1 9.3872 3.8757 -0.6028 36 1 6.6185 3.3070 0.1242 37 1 5.5334 4.4986 0.8828 38 1 4.5113 -1.2703 -0.0085 39 1 1.2287 -2.7195 0.8904 40 1 1.2293 -2.7198 -0.8896 41 1 2.7405 -4.3410 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601666793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -70.647522 kcal Electronic energy + Delta-G solvation = -23992.009850 eV Core-core repulsion = 20452.645810 eV Total energy + Delta-G solvation = -3539.364040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.70288 -39.13629 -37.16211 -36.70628 -33.78130 -33.15352 -31.97384 -31.70256 -29.81156 -28.01290 -26.29362 -24.97887 -24.31964 -21.84969 -21.66221 -20.75110 -19.67360 -18.63632 -17.41025 -16.98885 -16.58155 -16.12947 -15.59061 -15.05181 -14.93136 -14.48942 -14.21615 -14.07539 -13.69595 -13.43576 -13.30677 -13.15846 -12.88084 -12.74126 -12.45580 -12.15993 -12.04356 -11.83379 -11.65742 -10.98394 -10.83242 -10.70211 -10.47293 -10.29867 -10.20478 -9.87030 -9.57830 -9.52299 -9.11037 -8.92275 -8.43392 -8.34320 -7.73993 -5.97822 -4.07074 1.27970 2.34265 2.73083 3.31624 3.40041 3.43081 3.63507 3.76999 3.95899 4.44456 4.57715 4.77283 4.96120 5.01753 5.09612 5.22322 5.26982 5.31751 5.32799 5.48706 5.55806 5.68386 5.74852 5.94566 6.00039 6.14514 6.30947 6.36842 6.48641 6.63657 6.67647 6.84478 6.97434 6.99701 7.18032 7.25303 7.41559 7.64555 7.87721 7.99691 8.20550 8.39059 8.74130 8.97470 9.58705 11.07505 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.003949 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.046594 B = 7087.888374 C = 7979.864442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.000 4.000 3 O -0.150 6.150 4 C -0.063 4.063 5 C 0.587 3.413 6 O -0.514 6.514 7 N -0.596 5.596 8 C 0.099 3.901 9 C -0.132 4.132 10 C -0.111 4.111 11 C 0.039 3.961 12 H 0.030 0.970 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.880 5.880 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.113 3.887 22 C -0.104 4.104 23 C -0.196 4.196 24 C 0.154 3.846 25 O -0.565 6.565 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.986 -10.744 1.442 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 O -0.047 6.047 4 C -0.115 4.115 5 C 0.373 3.627 6 O -0.392 6.392 7 N -0.327 5.327 8 C -0.024 4.024 9 C -0.171 4.171 10 C -0.148 4.148 11 C 0.020 3.980 12 H 0.048 0.952 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.517 5.517 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.007 4.007 22 C -0.125 4.125 23 C -0.198 4.198 24 C 0.076 3.924 25 O -0.370 6.370 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.178 0.822 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.978 -10.184 1.550 20.721 hybrid contribution 0.426 0.023 0.125 0.445 sum -17.553 -10.161 1.675 20.351 Atomic orbital electron populations 1.20364 0.84915 1.04455 1.03454 1.22420 0.94051 0.84292 1.04397 1.84278 1.16460 1.33022 1.70943 1.22581 0.81674 0.94879 1.12326 1.16751 0.85671 0.81671 0.78569 1.90902 1.22044 1.75254 1.50952 1.48514 1.11464 1.05527 1.67202 1.22023 0.84656 0.98120 0.97626 1.21941 0.99481 0.98336 0.97293 1.21638 0.96114 0.96655 1.00431 1.18977 0.90898 0.94176 0.93926 0.95166 1.21108 0.92139 0.92611 1.50083 0.92245 1.25071 0.98707 0.95306 0.94992 1.69901 1.19042 1.14410 1.48354 0.86528 0.81825 0.81837 0.77779 1.19791 1.20961 1.21001 1.22438 0.88305 0.90889 0.99059 1.21647 0.97992 0.92478 1.00354 1.19879 0.93583 0.94856 1.11442 1.20183 0.87191 0.85406 0.99581 1.86537 1.32773 1.19953 1.97699 0.90117 0.89579 0.89612 0.91978 0.89241 0.92191 0.92119 0.92928 0.93130 0.92646 0.85852 0.93522 0.82168 0.92650 0.92640 0.77203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.12 36.01 0.36 -0.16 16 2 C 0.00 0.00 7.31 -35.41 -0.26 -0.26 16 3 O -0.15 -2.30 7.25 5.02 0.04 -2.26 16 4 C -0.06 -1.16 6.77 -36.79 -0.25 -1.41 16 5 C 0.59 13.08 7.65 -12.86 -0.10 12.98 16 6 O -0.51 -13.38 16.32 5.19 0.08 -13.29 16 7 N -0.60 -12.88 2.98 -174.09 -0.52 -13.40 16 8 C 0.10 1.71 6.10 -3.71 -0.02 1.69 16 9 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 10 C -0.11 -2.26 5.11 -26.69 -0.14 -2.40 16 11 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 12 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 13 C -0.52 -14.27 8.56 -34.44 -0.29 -14.57 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 16 N -0.88 -26.02 11.40 55.43 0.63 -25.39 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.11 2.81 5.42 -3.56 -0.02 2.79 16 22 C -0.10 -1.77 9.98 -39.39 -0.39 -2.16 16 23 C -0.20 -2.61 6.10 -104.93 -0.64 -3.25 16 24 C 0.15 1.44 7.29 36.01 0.26 1.71 16 25 O -0.56 -5.90 13.08 -35.23 -0.46 -6.36 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.09 1.42 4.23 -53.09 -0.22 1.20 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 3.57 5.14 -51.93 -0.27 3.30 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.16 2.85 7.97 -52.49 -0.42 2.43 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.38 1.85 9.12 45.56 0.42 2.26 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -34.23 336.16 -7.24 -41.47 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.11 Total: 2.78 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.95 Total: -5.03 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.11 Total: -38.79 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.34 Total: -21.91 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.23 -7.24 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.177 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds