Wall clock time and date at job start Tue Mar 31 2020 06:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.33924 * 125.61649 * 2 1 4 4 C 1.34910 * 109.38779 * 179.97438 * 3 2 1 5 5 C 1.46661 * 125.99025 * 179.97438 * 4 3 2 6 6 O 1.21698 * 119.99859 * 172.75477 * 5 4 3 7 7 N 1.34771 * 119.99973 * 352.76138 * 5 4 3 8 8 C 1.46930 * 120.63319 * 352.64093 * 7 5 4 9 9 C 1.53186 * 108.89477 * 233.67866 * 8 7 5 10 10 C 1.53041 * 109.31106 * 305.29304 * 9 8 7 11 11 C 1.53042 * 109.54048 * 61.36766 * 10 9 8 12 12 H 1.08995 * 109.49568 * 58.61518 * 11 10 9 13 13 C 1.50696 * 109.49604 * 178.68614 * 11 10 9 14 14 H 1.07998 * 120.00358 * 359.97438 * 13 11 10 15 15 C 1.37882 * 119.99666 * 179.97438 * 13 11 10 16 16 N 1.31511 * 119.99867 * 359.97438 * 15 13 11 17 17 Si 1.86806 * 119.99910 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46772 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47035 * 119.99689 * 17 15 13 20 20 H 1.48496 * 109.47005 * 239.99951 * 17 15 13 21 21 C 1.47208 * 120.81522 * 172.78237 * 7 5 4 22 22 C 1.36548 * 108.02255 * 0.22696 * 4 3 2 23 23 C 1.35132 * 125.61752 * 179.97438 * 2 1 3 24 24 C 1.50704 * 126.44032 * 0.02562 * 23 2 1 25 25 O 1.42900 * 109.46965 * 179.97438 * 24 23 2 26 26 H 1.08996 * 109.47082 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46609 * 119.97605 * 1 2 3 28 28 H 1.08994 * 109.47140 * 239.97575 * 1 2 3 29 29 H 1.08997 * 109.58442 * 113.81435 * 8 7 5 30 30 H 1.09001 * 109.58447 * 353.53824 * 8 7 5 31 31 H 1.08999 * 109.49881 * 65.24007 * 9 8 7 32 32 H 1.08997 * 109.49747 * 185.34047 * 9 8 7 33 33 H 1.09004 * 109.45672 * 181.38625 * 10 9 8 34 34 H 1.08997 * 109.46196 * 301.34269 * 10 9 8 35 35 H 0.97000 * 119.99524 * 179.97438 * 16 15 13 36 36 H 1.08997 * 109.53136 * 6.53743 * 21 7 5 37 37 H 1.09003 * 109.67593 * 246.23347 * 21 7 5 38 38 H 1.07993 * 126.64665 * 179.77120 * 22 4 3 39 39 H 1.08997 * 109.47193 * 299.99988 * 24 23 2 40 40 H 1.09000 * 109.47218 * 59.99914 * 24 23 2 41 41 H 0.96696 * 113.99554 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2870 1.0887 0.0000 4 6 3.5823 0.7117 0.0006 5 6 4.7415 1.6102 0.0002 6 8 5.8629 1.1567 0.1337 7 7 4.5647 2.9380 -0.1478 8 6 3.2399 3.4857 -0.4698 9 6 3.3576 4.3687 -1.7160 10 6 4.4342 5.4313 -1.4835 11 6 5.7835 4.7495 -1.2455 12 1 6.0357 4.1314 -2.1071 13 6 6.8486 5.7971 -1.0487 14 1 6.5897 6.8448 -1.0896 15 6 8.1538 5.4181 -0.8163 16 7 8.4689 4.1423 -0.7659 17 14 9.4743 6.7168 -0.5730 18 1 8.8654 8.0673 -0.6764 19 1 10.0895 6.5520 0.7684 20 1 10.5178 6.5635 -1.6184 21 6 5.6932 3.8708 0.0061 22 6 3.6251 -0.6531 -0.0042 23 6 2.2940 -1.0985 0.0005 24 6 1.8298 -2.5323 0.0006 25 8 2.9648 -3.4004 0.0006 26 1 -0.3633 1.0276 0.0005 27 1 -0.3632 -0.5135 -0.8902 28 1 -0.3633 -0.5142 0.8897 29 1 2.8776 4.0819 0.3676 30 1 2.5446 2.6692 -0.6648 31 1 3.6326 3.7537 -2.5730 32 1 2.4016 4.8554 -1.9087 33 1 4.5028 6.0764 -2.3595 34 1 4.1710 6.0301 -0.6116 35 1 9.3872 3.8757 -0.6028 36 1 6.6185 3.3070 0.1242 37 1 5.5334 4.4986 0.8828 38 1 4.5113 -1.2703 -0.0085 39 1 1.2287 -2.7195 0.8904 40 1 1.2293 -2.7198 -0.8896 41 1 2.7405 -4.3410 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601666793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:04 Heat of formation + Delta-G solvation = -96.022900 kcal Electronic energy + Delta-G solvation = -23993.110209 eV Core-core repulsion = 20452.645810 eV Total energy + Delta-G solvation = -3540.464399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.87817 -40.84373 -38.48057 -37.90395 -35.42748 -34.51467 -33.54275 -32.93857 -31.63120 -28.97752 -27.61990 -26.79121 -25.73983 -23.53165 -22.99785 -22.06709 -21.11499 -20.17178 -18.70572 -18.16872 -18.00923 -17.71647 -17.21688 -16.51596 -16.31292 -15.99421 -15.51656 -15.26894 -15.15157 -14.74862 -14.61784 -14.47919 -14.11197 -14.02738 -13.88092 -13.65733 -13.52708 -12.92402 -12.83847 -12.66299 -12.48410 -12.33679 -12.21924 -11.81109 -11.67022 -11.48516 -11.40230 -11.01872 -10.85923 -10.59706 -10.55623 -9.66874 -9.29350 -8.12425 -6.30627 -0.01185 1.22183 1.39494 1.40873 1.49947 1.53625 2.04172 2.20282 2.41501 3.15564 3.24675 3.44586 3.79538 3.99798 4.04669 4.10996 4.28002 4.31960 4.44830 4.49790 4.57732 4.59460 4.71742 4.74448 4.79121 4.80671 4.86125 4.94672 5.03472 5.12561 5.20553 5.22982 5.28882 5.43224 5.49391 5.58023 5.83595 5.86448 5.94822 6.28771 6.47708 6.82394 6.99092 7.04144 7.40147 8.91586 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.003949 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.046594 B = 7087.888374 C = 7979.864442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.030 3.970 3 O -0.152 6.152 4 C -0.099 4.099 5 C 0.580 3.420 6 O -0.574 6.574 7 N -0.600 5.600 8 C 0.095 3.905 9 C -0.124 4.124 10 C -0.104 4.104 11 C 0.037 3.963 12 H -0.015 1.015 13 C -0.534 4.534 14 H 0.066 0.934 15 C 0.007 3.993 16 N -0.918 5.918 17 Si 0.962 3.038 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.124 3.876 22 C -0.106 4.106 23 C -0.214 4.214 24 C 0.154 3.846 25 O -0.596 6.596 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.260 0.740 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.290 -10.533 1.505 25.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 O -0.050 6.050 4 C -0.150 4.150 5 C 0.369 3.631 6 O -0.456 6.456 7 N -0.330 5.330 8 C -0.026 4.026 9 C -0.162 4.162 10 C -0.142 4.142 11 C 0.018 3.982 12 H 0.003 0.997 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.192 4.192 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.182 1.182 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.003 3.997 22 C -0.127 4.127 23 C -0.215 4.215 24 C 0.077 3.923 25 O -0.406 6.406 26 H 0.111 0.889 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.157 0.843 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -22.345 -9.962 1.601 24.518 hybrid contribution 1.625 -0.161 0.097 1.636 sum -20.720 -10.123 1.697 23.123 Atomic orbital electron populations 1.20755 0.80201 1.06175 1.06056 1.23554 0.96079 0.82807 0.99809 1.84184 1.15138 1.34388 1.71239 1.21612 0.82069 0.94159 1.17157 1.17243 0.86360 0.82105 0.77406 1.90845 1.24764 1.76368 1.53648 1.48534 1.12297 1.05185 1.67002 1.22344 0.82639 0.99102 0.98494 1.21913 1.00479 0.97253 0.96557 1.21525 0.94206 0.97378 1.01080 1.18920 0.93641 0.93544 0.92086 0.99709 1.21536 0.93019 0.93348 1.49382 0.91568 1.25961 1.01282 0.97182 0.94748 1.70114 1.19151 1.16723 1.49657 0.85446 0.78755 0.79639 0.77468 1.18169 1.20819 1.20889 1.21911 0.88158 0.90755 0.98879 1.21743 0.99554 0.92025 0.99349 1.20388 0.91582 0.97741 1.11796 1.20410 0.86980 0.82713 1.02246 1.86485 1.34207 1.21997 1.97880 0.88936 0.86747 0.86802 0.89896 0.87173 0.93559 0.87254 0.92468 0.91985 0.93088 0.90408 0.93589 0.84315 0.89747 0.89778 0.74587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.12 71.24 0.72 0.11 16 2 C 0.03 0.62 7.31 24.97 0.18 0.80 16 3 O -0.15 -4.38 7.25 -4.94 -0.04 -4.42 16 4 C -0.10 -3.73 6.77 24.08 0.16 -3.57 16 5 C 0.58 27.59 7.65 86.44 0.66 28.25 16 6 O -0.57 -32.84 16.32 -4.34 -0.07 -32.91 16 7 N -0.60 -27.05 2.98 -822.91 -2.46 -29.51 16 8 C 0.10 3.17 6.10 86.36 0.53 3.70 16 9 C -0.12 -4.02 6.08 30.67 0.19 -3.83 16 10 C -0.10 -4.18 5.11 30.62 0.16 -4.02 16 11 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 12 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 13 C -0.53 -30.12 8.56 25.60 0.22 -29.90 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 15 C 0.01 0.43 5.30 84.66 0.45 0.88 16 16 N -0.92 -57.64 11.40 21.45 0.24 -57.39 16 17 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 21 C 0.12 6.59 5.42 86.31 0.47 7.05 16 22 C -0.11 -3.70 9.98 22.39 0.22 -3.47 16 23 C -0.21 -5.22 6.10 -20.06 -0.12 -5.34 16 24 C 0.15 2.34 7.29 71.24 0.52 2.86 16 25 O -0.60 -11.49 13.08 -148.98 -1.95 -13.44 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.11 3.26 4.23 -20.80 -0.09 3.17 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.08 4.88 5.14 -2.39 -0.01 4.87 16 37 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.14 5.35 7.97 -2.91 -0.02 5.33 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.40 3.08 9.12 -74.06 -0.68 2.40 16 Total: -1.00 -83.24 336.16 2.38 -80.86 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.30 Total: 14.18 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.33 Total: -4.55 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.21 Total: -86.90 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -2.05 Total: -50.77 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -83.24 2.38 -80.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601666793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.164 kcal (2) G-P(sol) polarization free energy of solvation -83.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds