Wall clock time and date at job start Tue Mar 31 2020 06:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00245 * 2 1 4 4 C 1.38756 * 120.05293 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94549 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.04998 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11707 * 0.02562 * 6 5 4 8 8 C 1.38171 * 120.05422 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.02627 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46902 * 264.95006 * 9 8 7 11 11 C 1.53003 * 109.47280 * 60.00275 * 10 9 8 12 12 C 1.53001 * 109.47075 * 300.00357 * 10 9 8 13 13 O 1.42902 * 109.46859 * 299.99609 * 12 10 9 14 14 N 1.46503 * 109.47054 * 180.02562 * 10 9 8 15 15 C 1.34778 * 119.99900 * 180.02562 * 14 10 9 16 16 O 1.21692 * 120.00006 * 0.02562 * 15 14 10 17 17 C 1.46373 * 119.99945 * 180.02562 * 15 14 10 18 18 H 1.08001 * 120.00163 * 353.94032 * 17 15 14 19 19 C 1.40048 * 119.99814 * 173.93710 * 17 15 14 20 20 N 1.30669 * 120.00447 * 6.15327 * 19 17 15 21 21 Si 1.86804 * 119.99948 * 186.15110 * 19 17 15 22 22 H 1.48496 * 109.47428 * 94.98483 * 21 19 17 23 23 H 1.48499 * 109.47218 * 214.99101 * 21 19 17 24 24 H 1.48507 * 109.46702 * 334.98521 * 21 19 17 25 25 H 1.08997 * 109.47448 * 300.00487 * 1 2 3 26 26 H 1.09004 * 109.46802 * 60.00486 * 1 2 3 27 27 H 1.08996 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.02877 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.97618 * 179.97438 * 5 4 3 30 30 H 1.08010 * 119.94049 * 179.74153 * 6 5 4 31 31 H 1.08006 * 119.97192 * 179.97438 * 7 6 5 32 32 H 1.08998 * 109.47327 * 24.95117 * 9 8 7 33 33 H 1.08998 * 109.47069 * 144.95073 * 9 8 7 34 34 H 1.08998 * 109.47075 * 59.99812 * 11 10 9 35 35 H 1.09001 * 109.47352 * 180.02562 * 11 10 9 36 36 H 1.08997 * 109.46879 * 299.99998 * 11 10 9 37 37 H 1.08997 * 109.47335 * 59.99848 * 12 10 9 38 38 H 1.09005 * 109.47085 * 180.02562 * 12 10 9 39 39 H 0.96706 * 113.99773 * 180.02562 * 13 12 10 40 40 H 0.96997 * 119.99588 * 0.02562 * 14 10 9 41 41 H 0.97001 * 120.00506 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 -0.0005 9 6 4.2537 0.0221 0.0006 10 6 4.4274 -0.4747 -1.4360 11 6 5.1394 0.5971 -2.2638 12 6 3.0538 -0.7613 -2.0461 13 8 2.3889 -1.7624 -1.2730 14 7 5.2266 -1.7025 -1.4349 15 6 5.5101 -2.3232 -2.5972 16 8 5.1025 -1.8634 -3.6476 17 6 6.3081 -3.5502 -2.5960 18 1 6.7519 -3.9049 -1.6775 19 6 6.4961 -4.2643 -3.7859 20 7 6.0626 -3.7748 -4.9173 21 14 7.3668 -5.9168 -3.7559 22 1 6.3600 -7.0055 -3.6770 23 1 8.1711 -6.0751 -4.9942 24 1 8.2616 -5.9833 -2.5726 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 0.2129 2.3204 -0.0005 29 1 1.3340 4.5114 -0.0019 30 1 3.7923 4.6381 -0.0052 31 1 5.1345 2.5752 0.0000 32 1 5.2322 0.2264 0.4353 33 1 3.7465 -0.7414 0.5903 34 1 6.1179 0.8013 -1.8292 35 1 5.2628 0.2434 -3.2874 36 1 4.5445 1.5104 -2.2646 37 1 2.4589 0.1519 -2.0469 38 1 3.1776 -1.1157 -3.0694 39 1 1.5101 -1.9950 -1.6030 40 1 5.5517 -2.0687 -0.5976 41 1 6.1931 -4.2692 -5.7415 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601853592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:07 Heat of formation + Delta-G solvation = -96.644597 kcal Electronic energy + Delta-G solvation = -24777.200845 eV Core-core repulsion = 21236.709487 eV Total energy + Delta-G solvation = -3540.491358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.40333 -38.23605 -37.25060 -35.71858 -34.27053 -32.46079 -31.62415 -30.07274 -29.48323 -27.34149 -26.36185 -25.91174 -25.12162 -22.04241 -21.86587 -20.23125 -18.35754 -17.74131 -17.10863 -16.54724 -16.12076 -15.79448 -15.53286 -15.16597 -14.82566 -14.40557 -14.08753 -13.73154 -13.41148 -13.08586 -12.88338 -12.73118 -12.37132 -12.16208 -11.96942 -11.77954 -11.53404 -11.35669 -11.21257 -11.00290 -10.95909 -10.83942 -10.61221 -10.53607 -10.32279 -10.20493 -9.99021 -9.04662 -8.75527 -8.71279 -7.98103 -7.34890 -7.29305 -6.09162 -4.52650 1.38481 1.52928 3.18976 3.26129 3.29579 3.42454 3.81861 4.17883 4.67513 4.72197 4.86258 4.90786 5.07720 5.12362 5.14393 5.20730 5.38103 5.49024 5.53107 5.61779 5.63952 5.71321 5.93193 5.96877 6.15471 6.20777 6.26834 6.39885 6.44789 6.51734 6.56724 6.61940 6.74726 6.87118 6.93963 7.20255 7.52497 7.54730 8.06123 8.27439 8.43219 8.48875 9.12591 9.70556 10.69948 10.91469 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027875 B = 0.004324 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.244972 B = 6473.584023 C = 6955.319438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.280 6.280 3 C 0.133 3.867 4 C -0.215 4.215 5 C -0.090 4.090 6 C -0.161 4.161 7 C -0.078 4.078 8 C -0.096 4.096 9 C -0.073 4.073 10 C 0.203 3.797 11 C -0.160 4.160 12 C 0.076 3.924 13 O -0.547 6.547 14 N -0.750 5.750 15 C 0.565 3.435 16 O -0.580 6.580 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.090 3.910 20 N -0.770 5.770 21 Si 0.904 3.096 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.266 1.266 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.356 0.644 40 H 0.379 0.621 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 11.291 10.425 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.192 6.192 3 C 0.087 3.913 4 C -0.234 4.234 5 C -0.109 4.109 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.098 4.098 9 C -0.111 4.111 10 C 0.115 3.885 11 C -0.218 4.218 12 C -0.003 4.003 13 O -0.349 6.349 14 N -0.404 5.404 15 C 0.369 3.631 16 O -0.463 6.463 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.129 4.129 20 N -0.399 5.399 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.190 1.190 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.200 0.800 40 H 0.210 0.790 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.146 11.442 9.789 17.618 hybrid contribution -0.294 -0.741 0.063 0.799 sum -9.439 10.701 9.852 17.340 Atomic orbital electron populations 1.23022 0.79886 1.03717 1.00564 1.86474 1.19770 1.25237 1.87768 1.18915 0.91991 0.84629 0.95733 1.21191 0.99719 0.92541 1.09959 1.20841 0.94672 0.96728 0.98620 1.20980 0.93883 0.98216 1.04890 1.20954 0.99948 0.91070 0.97654 1.19195 0.90613 0.95745 1.04204 1.20659 0.98480 0.94211 0.97740 1.19734 0.89735 0.86552 0.92455 1.22211 0.99128 0.97086 1.03368 1.22553 0.92168 0.89580 0.95980 1.86492 1.32795 1.59782 1.55788 1.46040 1.57993 1.26507 1.09866 1.18041 0.79953 0.83869 0.81268 1.90504 1.57424 1.67317 1.31080 1.20904 1.33873 1.08290 0.95199 0.91666 1.25653 0.94095 0.98240 0.94912 1.70023 1.35916 1.35622 0.98328 0.86430 0.79680 0.82760 0.78266 1.19929 1.20602 1.18969 0.93338 0.93233 0.88298 0.85912 0.86366 0.86253 0.85490 0.91385 0.89594 0.93139 0.89676 0.93492 0.95732 0.91637 0.80045 0.78990 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.28 -3.90 5.71 -42.85 -0.24 -4.15 16 3 C 0.13 1.89 5.21 -39.22 -0.20 1.68 16 4 C -0.22 -2.59 9.04 -39.43 -0.36 -2.95 16 5 C -0.09 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.16 -1.86 10.04 -39.56 -0.40 -2.26 16 7 C -0.08 -1.02 8.29 -39.60 -0.33 -1.35 16 8 C -0.10 -1.43 4.01 -104.48 -0.42 -1.85 16 9 C -0.07 -1.21 4.25 -27.88 -0.12 -1.33 16 10 C 0.20 4.03 0.62 -131.81 -0.08 3.95 16 11 C -0.16 -3.16 7.91 37.16 0.29 -2.87 16 12 C 0.08 1.54 4.84 37.16 0.18 1.72 16 13 O -0.55 -10.38 10.38 -58.65 -0.61 -10.99 16 14 N -0.75 -17.31 4.97 -48.99 -0.24 -17.55 16 15 C 0.56 16.00 7.16 -12.99 -0.09 15.91 16 16 O -0.58 -18.05 11.25 5.20 0.06 -17.99 16 17 C -0.55 -15.67 9.53 -35.63 -0.34 -16.01 16 18 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 19 C 0.09 2.55 5.49 -17.37 -0.10 2.45 16 20 N -0.77 -23.17 11.85 55.55 0.66 -22.51 16 21 Si 0.90 20.57 29.56 -169.99 -5.03 15.54 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.07 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.09 1.51 7.23 -51.93 -0.38 1.13 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 2.03 6.16 -51.93 -0.32 1.71 16 36 H 0.05 0.82 6.41 -51.93 -0.33 0.49 16 37 H 0.02 0.46 5.67 -51.93 -0.29 0.17 16 38 H 0.07 1.61 6.16 -51.93 -0.32 1.29 16 39 H 0.36 5.47 9.11 45.56 0.41 5.88 16 40 H 0.38 8.04 8.45 -40.82 -0.35 7.70 16 41 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -34.81 326.75 -6.62 -41.44 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -4.78 Total: 14.38 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.36 Total: -3.08 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.42 Total: -40.07 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.79 Total: -33.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.81 -6.62 -41.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601853592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.208 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds