Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00075 * 2 1 4 4 H 1.48503 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47609 * 300.00580 * 3 2 1 6 6 H 1.48503 * 109.47005 * 60.00447 * 3 2 1 7 7 C 1.37880 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99888 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47028 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00137 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.38883 * 120.74390 * 270.24421 * 12 11 10 14 14 C 1.38020 * 119.32966 * 180.30793 * 13 12 11 15 15 N 1.31981 * 120.85411 * 359.43490 * 14 13 12 16 16 C 1.32394 * 121.62128 * 0.27550 * 15 14 13 17 17 N 1.39003 * 119.70593 * 179.97438 * 16 15 14 18 18 C 1.46470 * 110.99914 * 125.98128 * 17 16 15 19 19 C 1.53248 * 109.85867 * 162.23619 * 18 17 16 20 20 S 1.81904 * 108.50661 * 62.00199 * 19 18 17 21 21 C 1.81897 * 101.91458 * 308.69605 * 20 19 18 22 22 C 1.46471 * 110.99884 * 0.02562 * 17 16 15 23 23 C 1.38294 * 120.74863 * 89.99728 * 12 11 10 24 24 H 0.96998 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47403 * 60.00277 * 9 7 2 26 26 H 1.09001 * 109.47373 * 299.99639 * 9 7 2 27 27 H 1.00904 * 110.99873 * 303.95298 * 10 9 7 28 28 H 1.08995 * 109.47395 * 59.99254 * 11 10 9 29 29 H 1.09007 * 109.46628 * 299.99373 * 11 10 9 30 30 H 1.08003 * 120.33805 * 0.02562 * 13 12 11 31 31 H 1.08002 * 119.57645 * 179.71548 * 14 13 12 32 32 H 1.09002 * 109.40815 * 282.35493 * 18 17 16 33 33 H 1.08995 * 109.40614 * 42.11623 * 18 17 16 34 34 H 1.09003 * 109.62989 * 302.29860 * 19 18 17 35 35 H 1.08991 * 109.79524 * 181.80281 * 19 18 17 36 36 H 1.08998 * 109.63310 * 291.60093 * 21 20 19 37 37 H 1.09002 * 109.79608 * 171.10490 * 21 20 19 38 38 H 1.09008 * 109.40312 * 317.88242 * 22 17 16 39 39 H 1.08997 * 109.40741 * 77.71873 * 22 17 16 40 40 H 1.08004 * 120.45294 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5147 -6.0260 -0.0005 13 6 2.9949 -6.5496 -1.1938 14 6 3.9143 -7.5785 -1.1592 15 7 4.3481 -8.0602 -0.0095 16 6 3.9189 -7.5840 1.1488 17 7 4.4022 -8.1214 2.3361 18 6 4.9478 -7.0741 3.2026 19 6 5.0613 -7.5941 4.6397 20 16 6.2159 -8.9997 4.6557 21 6 5.5467 -10.0504 3.3302 22 6 5.3668 -9.1919 2.0734 23 6 2.9875 -6.5510 1.1883 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8404 -3.5487 -0.7819 28 1 0.8805 -4.9812 -0.8912 29 1 0.8800 -4.9817 0.8887 30 1 2.6491 -6.1588 -2.1394 31 1 4.2869 -7.9918 -2.0848 32 1 5.9353 -6.7847 2.8432 33 1 4.2878 -6.2070 3.1823 34 1 4.0819 -7.9207 4.9893 35 1 5.4373 -6.8040 5.2895 36 1 4.5833 -10.4576 3.6369 37 1 6.2390 -10.8659 3.1206 38 1 5.0018 -9.8162 1.2578 39 1 6.3255 -8.7550 1.7939 40 1 2.6386 -6.1645 2.1346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601968848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = 48.428477 kcal Electronic energy + Delta-G solvation = -20610.905983 eV Core-core repulsion = 17551.751087 eV Total energy + Delta-G solvation = -3059.154895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74075 -38.00591 -35.69030 -33.18090 -32.16754 -31.78111 -31.42577 -28.54976 -27.47843 -24.99800 -24.02362 -22.89724 -22.17519 -21.51935 -20.54380 -17.74090 -16.81995 -16.61803 -16.31164 -15.86195 -15.35618 -14.92888 -14.62824 -14.55342 -14.22704 -14.06273 -13.87306 -13.57107 -13.21043 -13.00461 -12.85125 -12.70183 -12.05646 -12.01120 -11.95975 -11.33340 -11.27446 -11.07181 -10.78782 -10.75610 -10.18897 -10.06431 -9.98810 -9.50361 -9.47756 -9.21014 -8.55764 -8.19197 -7.96659 -7.46070 -6.10407 -4.12791 1.17487 1.34095 1.49010 2.22554 3.17472 3.26704 3.34295 3.39221 3.83865 4.29096 4.37792 4.54417 4.59199 4.77751 4.84259 4.87834 5.00253 5.05668 5.12180 5.22154 5.24776 5.25894 5.41485 5.43242 5.49464 5.57947 5.66484 5.72013 5.88823 5.96682 6.05455 6.38028 6.51631 6.58739 7.04866 7.10971 7.29734 7.68743 7.96694 8.02098 8.23883 8.47141 8.96166 9.52572 11.00690 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.003107 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.601261 B = 9010.207431 C = 9964.090047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.682 5.682 11 C 0.091 3.909 12 C 0.000 4.000 13 C -0.193 4.193 14 C 0.121 3.879 15 N -0.528 5.528 16 C 0.308 3.692 17 N -0.488 5.488 18 C 0.055 3.945 19 C -0.074 4.074 20 S -0.276 6.276 21 C -0.077 4.077 22 C 0.064 3.936 23 C -0.165 4.165 24 H 0.262 0.738 25 H -0.011 1.011 26 H 0.030 0.970 27 H 0.331 0.669 28 H 0.035 0.965 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.859 -19.317 3.716 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.313 5.313 11 C -0.039 4.039 12 C -0.009 4.009 13 C -0.215 4.215 14 C -0.035 4.035 15 N -0.243 5.243 16 C 0.077 3.923 17 N -0.206 5.206 18 C -0.073 4.073 19 C -0.223 4.223 20 S -0.050 6.050 21 C -0.226 4.226 22 C -0.064 4.064 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.927 -20.251 5.396 23.189 hybrid contribution -1.135 2.028 -2.009 3.072 sum 8.792 -18.223 3.387 20.514 Atomic orbital electron populations 1.69965 1.06095 1.26818 1.50757 1.24990 0.94893 0.99432 0.95228 0.86416 0.80061 0.83219 0.77576 1.19627 1.21041 1.20918 1.21187 0.93562 0.90090 1.50554 0.91881 1.19605 0.90531 0.87137 0.96002 1.60775 1.21080 1.00304 1.49111 1.20934 0.93144 0.88507 1.01279 1.20327 0.94380 0.93987 0.92198 1.21966 1.00975 0.99615 0.98946 1.22388 0.93226 0.92898 0.95019 1.67483 1.27255 1.31541 0.97974 1.19550 0.93392 0.91332 0.88015 1.58330 1.37797 1.11917 1.12543 1.22475 1.00612 0.93194 0.90982 1.23534 1.01662 0.98158 0.98904 1.86961 1.43668 1.24403 1.49962 1.23601 1.04622 0.99310 0.95064 1.22137 0.94690 0.92839 0.96757 1.21412 0.99672 0.98087 0.99603 0.92871 0.99366 0.95219 0.85293 0.94676 0.90377 0.85008 0.82890 0.92007 0.88021 0.88658 0.86727 0.89050 0.87155 0.87810 0.92220 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.29 9.32 -34.44 -0.32 -14.61 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 4.91 5.44 -4.98 -0.03 4.88 16 10 N -0.68 -13.99 6.48 -116.34 -0.75 -14.75 16 11 C 0.09 1.52 5.86 -4.98 -0.03 1.49 16 12 C 0.00 0.00 5.43 -104.36 -0.57 -0.57 16 13 C -0.19 -2.49 9.81 -39.42 -0.39 -2.87 16 14 C 0.12 1.46 11.17 -17.57 -0.20 1.27 16 15 N -0.53 -7.01 8.42 -12.44 -0.10 -7.11 16 16 C 0.31 4.11 6.42 -155.02 -1.00 3.11 16 17 N -0.49 -5.62 4.43 -173.57 -0.77 -6.39 16 18 C 0.05 0.57 5.28 -3.93 -0.02 0.55 16 19 C -0.07 -0.67 6.69 37.29 0.25 -0.42 16 20 S -0.28 -2.77 22.39 -107.50 -2.41 -5.17 16 21 C -0.08 -0.67 6.69 37.29 0.25 -0.42 16 22 C 0.06 0.66 4.83 -3.92 -0.02 0.64 16 23 C -0.16 -2.31 8.73 -39.23 -0.34 -2.65 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.33 6.57 8.71 -39.29 -0.34 6.23 16 28 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.08 1.31 8.10 -51.92 -0.42 0.89 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.06 0.69 7.91 -51.93 -0.41 0.27 16 33 H 0.10 1.08 6.25 -51.93 -0.32 0.76 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.11 7.13 -51.92 -0.37 0.74 16 39 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 40 H 0.14 1.83 7.09 -52.48 -0.37 1.46 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -30.19 339.28 -11.71 -41.90 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.00 Total: 3.80 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.50 Total: -8.13 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.89 Total: -53.83 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.41 Total: -5.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.19 -11.71 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.329 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds