Wall clock time and date at job start Tue Mar 31 2020 06:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00075 * 2 1 4 4 H 1.48503 * 109.47221 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47609 * 300.00580 * 3 2 1 6 6 H 1.48503 * 109.47005 * 60.00447 * 3 2 1 7 7 C 1.37880 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99868 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99888 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47028 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00137 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.38883 * 120.74390 * 270.24421 * 12 11 10 14 14 C 1.38020 * 119.32966 * 180.30793 * 13 12 11 15 15 N 1.31981 * 120.85411 * 359.43490 * 14 13 12 16 16 C 1.32394 * 121.62128 * 0.27550 * 15 14 13 17 17 N 1.39003 * 119.70593 * 179.97438 * 16 15 14 18 18 C 1.46470 * 110.99914 * 125.98128 * 17 16 15 19 19 C 1.53248 * 109.85867 * 162.23619 * 18 17 16 20 20 S 1.81904 * 108.50661 * 62.00199 * 19 18 17 21 21 C 1.81897 * 101.91458 * 308.69605 * 20 19 18 22 22 C 1.46471 * 110.99884 * 0.02562 * 17 16 15 23 23 C 1.38294 * 120.74863 * 89.99728 * 12 11 10 24 24 H 0.96998 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47403 * 60.00277 * 9 7 2 26 26 H 1.09001 * 109.47373 * 299.99639 * 9 7 2 27 27 H 1.00904 * 110.99873 * 303.95298 * 10 9 7 28 28 H 1.08995 * 109.47395 * 59.99254 * 11 10 9 29 29 H 1.09007 * 109.46628 * 299.99373 * 11 10 9 30 30 H 1.08003 * 120.33805 * 0.02562 * 13 12 11 31 31 H 1.08002 * 119.57645 * 179.71548 * 14 13 12 32 32 H 1.09002 * 109.40815 * 282.35493 * 18 17 16 33 33 H 1.08995 * 109.40614 * 42.11623 * 18 17 16 34 34 H 1.09003 * 109.62989 * 302.29860 * 19 18 17 35 35 H 1.08991 * 109.79524 * 181.80281 * 19 18 17 36 36 H 1.08998 * 109.63310 * 291.60093 * 21 20 19 37 37 H 1.09002 * 109.79608 * 171.10490 * 21 20 19 38 38 H 1.09008 * 109.40312 * 317.88242 * 22 17 16 39 39 H 1.08997 * 109.40741 * 77.71873 * 22 17 16 40 40 H 1.08004 * 120.45294 * 359.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5147 -6.0260 -0.0005 13 6 2.9949 -6.5496 -1.1938 14 6 3.9143 -7.5785 -1.1592 15 7 4.3481 -8.0602 -0.0095 16 6 3.9189 -7.5840 1.1488 17 7 4.4022 -8.1214 2.3361 18 6 4.9478 -7.0741 3.2026 19 6 5.0613 -7.5941 4.6397 20 16 6.2159 -8.9997 4.6557 21 6 5.5467 -10.0504 3.3302 22 6 5.3668 -9.1919 2.0734 23 6 2.9875 -6.5510 1.1883 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8404 -3.5487 -0.7819 28 1 0.8805 -4.9812 -0.8912 29 1 0.8800 -4.9817 0.8887 30 1 2.6491 -6.1588 -2.1394 31 1 4.2869 -7.9918 -2.0848 32 1 5.9353 -6.7847 2.8432 33 1 4.2878 -6.2070 3.1823 34 1 4.0819 -7.9207 4.9893 35 1 5.4373 -6.8040 5.2895 36 1 4.5833 -10.4576 3.6369 37 1 6.2390 -10.8659 3.1206 38 1 5.0018 -9.8162 1.2578 39 1 6.3255 -8.7550 1.7939 40 1 2.6386 -6.1645 2.1346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601968848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:06 Heat of formation + Delta-G solvation = 29.860390 kcal Electronic energy + Delta-G solvation = -20611.711155 eV Core-core repulsion = 17551.751087 eV Total energy + Delta-G solvation = -3059.960068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.73639 -38.97842 -37.24162 -34.95153 -33.42396 -32.80747 -32.44534 -29.45346 -29.24463 -26.51691 -25.02416 -23.90179 -23.48807 -23.05229 -21.57394 -18.92122 -18.32238 -17.70543 -17.48277 -16.89534 -16.71777 -16.33764 -16.03120 -15.54849 -15.32206 -15.15524 -14.88248 -14.82092 -14.57415 -14.05158 -13.92856 -13.68296 -13.54727 -13.36705 -13.10087 -12.76684 -12.70300 -12.57812 -12.48917 -12.06697 -11.87300 -11.36672 -11.06237 -10.79493 -10.69613 -10.58682 -10.47917 -9.21661 -9.13302 -8.75985 -8.24353 -6.35243 0.16615 0.25657 0.74911 1.41005 1.41889 1.48456 1.55376 2.26702 2.39371 2.81767 3.09605 3.37413 3.57397 3.73624 3.77055 3.86798 3.99981 4.06289 4.14571 4.18050 4.22063 4.26280 4.35061 4.52994 4.62788 4.64107 4.75455 4.81002 4.81477 4.87445 4.94256 5.05148 5.23448 5.38336 5.50564 5.59288 5.62087 5.98316 6.06523 6.36458 6.63863 6.84882 6.96618 7.35737 8.87321 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019567 B = 0.003107 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.601261 B = 9010.207431 C = 9964.090047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.680 5.680 11 C 0.096 3.904 12 C -0.013 4.013 13 C -0.195 4.195 14 C 0.125 3.875 15 N -0.534 5.534 16 C 0.304 3.696 17 N -0.490 5.490 18 C 0.057 3.943 19 C -0.065 4.065 20 S -0.300 6.300 21 C -0.066 4.066 22 C 0.069 3.931 23 C -0.175 4.175 24 H 0.266 0.734 25 H -0.034 1.034 26 H 0.004 0.996 27 H 0.336 0.664 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.187 0.813 32 H 0.055 0.945 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.219 -19.881 3.424 22.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.081 3.919 10 N -0.311 5.311 11 C -0.033 4.033 12 C -0.022 4.022 13 C -0.216 4.216 14 C -0.032 4.032 15 N -0.249 5.249 16 C 0.073 3.927 17 N -0.207 5.207 18 C -0.070 4.070 19 C -0.214 4.214 20 S -0.075 6.075 21 C -0.215 4.215 22 C -0.059 4.059 23 C -0.198 4.198 24 H 0.074 0.926 25 H -0.016 1.016 26 H 0.022 0.978 27 H 0.153 0.847 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.204 0.796 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.302 -20.842 5.113 24.254 hybrid contribution -1.562 2.106 -1.929 3.255 sum 9.740 -18.736 3.183 21.355 Atomic orbital electron populations 1.70082 1.07733 1.28000 1.51466 1.25918 0.95771 1.03292 0.94580 0.85302 0.78922 0.78406 0.77775 1.18745 1.20295 1.20399 1.21536 0.93767 0.91359 1.50640 0.91851 1.19239 0.90547 0.88491 0.93638 1.60602 1.20361 1.00696 1.49444 1.20868 0.93708 0.87475 1.01229 1.20131 0.94740 0.93929 0.93381 1.22153 1.00908 0.99698 0.98837 1.22930 0.92279 0.92118 0.95828 1.67582 1.27369 1.31697 0.98288 1.19693 0.93226 0.91061 0.88732 1.58372 1.38178 1.12277 1.11922 1.22463 0.99947 0.92975 0.91625 1.23521 1.01633 0.98115 0.98092 1.87062 1.44461 1.25257 1.50688 1.23600 1.05199 0.99089 0.93597 1.22117 0.93843 0.92485 0.97483 1.21437 1.00207 0.98684 0.99439 0.92558 1.01597 0.97826 0.84703 0.94193 0.90924 0.83495 0.79572 0.92708 0.88442 0.88312 0.85388 0.88751 0.85260 0.88027 0.93016 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 7 C -0.53 -29.92 9.32 25.60 0.24 -29.68 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 10.84 5.44 85.55 0.47 11.31 16 10 N -0.68 -28.20 6.48 -521.97 -3.38 -31.59 16 11 C 0.10 3.25 5.86 85.56 0.50 3.75 16 12 C -0.01 -0.38 5.43 -19.70 -0.11 -0.48 16 13 C -0.19 -4.68 9.81 22.37 0.22 -4.46 16 14 C 0.13 2.72 11.17 84.62 0.95 3.67 16 15 N -0.53 -13.27 8.42 -193.26 -1.63 -14.90 16 16 C 0.30 7.81 6.42 133.07 0.85 8.67 16 17 N -0.49 -10.80 4.43 -703.04 -3.11 -13.92 16 18 C 0.06 1.16 5.28 86.47 0.46 1.62 16 19 C -0.07 -1.11 6.69 72.07 0.48 -0.62 16 20 S -0.30 -5.65 22.39 -56.49 -1.27 -6.91 16 21 C -0.07 -1.05 6.69 72.07 0.48 -0.57 16 22 C 0.07 1.32 4.83 86.47 0.42 1.74 16 23 C -0.17 -4.82 8.73 22.50 0.20 -4.63 16 24 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 25 H -0.03 -1.87 8.14 -2.39 -0.02 -1.89 16 26 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 27 H 0.34 13.31 8.71 -89.69 -0.78 12.53 16 28 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 29 H 0.07 2.50 8.10 -2.38 -0.02 2.48 16 30 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.05 1.19 7.91 -2.39 -0.02 1.17 16 33 H 0.10 2.05 6.25 -2.39 -0.01 2.04 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 35 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 2.02 7.13 -2.38 -0.02 2.00 16 39 H 0.05 1.08 7.91 -2.39 -0.02 1.06 16 40 H 0.13 3.66 7.09 -2.91 -0.02 3.64 16 Total: -1.00 -64.17 339.28 -1.21 -65.38 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.25 Total: 20.49 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.61 Total: -9.07 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -7.84 Total: -115.49 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.27 Total: -6.91 kcal Total: -64.17 -1.21 -65.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601968848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.236 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds