Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00122 * 3 2 1 5 5 H 1.48504 * 109.47347 * 30.00325 * 3 2 1 6 6 H 1.48511 * 109.47413 * 150.00015 * 3 2 1 7 7 C 1.38791 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99999 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00309 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00122 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47175 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47024 * 180.02562 * 12 11 10 14 14 C 1.48555 * 110.99795 * 285.41221 * 13 12 11 15 15 C 1.54384 * 104.59735 * 200.96178 * 14 13 12 16 16 C 1.54266 * 105.05498 * 23.85478 * 15 14 13 17 17 C 1.48571 * 110.99779 * 170.00029 * 13 12 11 18 18 H 1.08999 * 110.51236 * 40.20725 * 17 13 12 19 19 C 1.50700 * 110.40607 * 277.81486 * 17 13 12 20 20 N 1.31794 * 119.11812 * 138.37837 * 19 17 13 21 21 C 1.32333 * 120.81891 * 179.97438 * 20 19 17 22 22 C 1.38596 * 119.10260 * 359.97438 * 21 20 19 23 23 C 1.38599 * 118.40307 * 0.02562 * 22 21 20 24 24 N 1.31794 * 119.12507 * 318.35049 * 19 17 13 25 25 H 0.96998 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47162 * 60.00310 * 10 9 7 27 27 H 1.08994 * 109.47219 * 300.00177 * 10 9 7 28 28 H 1.08997 * 109.46918 * 60.00102 * 11 10 9 29 29 H 1.09000 * 109.46985 * 299.99736 * 11 10 9 30 30 H 1.08998 * 109.47049 * 59.99640 * 12 11 10 31 31 H 1.09002 * 109.47144 * 300.00150 * 12 11 10 32 32 H 1.09003 * 110.40986 * 82.18682 * 14 13 12 33 33 H 1.09001 * 110.41786 * 319.74531 * 14 13 12 34 34 H 1.09001 * 110.32393 * 264.96273 * 15 14 13 35 35 H 1.08996 * 110.32424 * 142.75232 * 15 14 13 36 36 H 1.08997 * 110.31862 * 241.09689 * 16 15 14 37 37 H 1.09007 * 110.40620 * 118.94530 * 16 15 14 38 38 H 1.08003 * 120.45132 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.79977 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.45102 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0017 11 6 5.5958 -3.2362 0.0021 12 6 5.8615 -4.7429 0.0030 13 7 7.3105 -4.9846 0.0040 14 6 7.8969 -4.7093 -1.3329 15 6 9.2285 -5.4905 -1.3420 16 6 9.0401 -6.6155 -0.3034 17 6 7.6108 -6.4194 0.2457 18 1 6.9062 -7.0531 -0.2929 19 6 7.5681 -6.7238 1.7210 20 7 7.0000 -7.8408 2.1293 21 6 6.9443 -8.1419 3.4167 22 6 7.4938 -7.2648 4.3385 23 6 8.0825 -6.1005 3.8710 24 7 8.1004 -5.8663 2.5686 25 1 -0.4850 0.8400 0.0004 26 1 3.6434 -3.4325 -0.8876 27 1 3.6440 -3.4305 0.8923 28 1 6.0386 -2.7882 0.8916 29 1 6.0387 -2.7901 -0.8884 30 1 5.4187 -5.1905 -0.8867 31 1 5.4185 -5.1895 0.8932 32 1 8.0817 -3.6419 -1.4545 33 1 7.2369 -5.0738 -2.1201 34 1 10.0518 -4.8389 -1.0492 35 1 9.4123 -5.9138 -2.3295 36 1 9.7710 -6.5161 0.4990 37 1 9.1321 -7.5918 -0.7796 38 1 6.4770 -9.0587 3.7447 39 1 7.4640 -7.4835 5.3957 40 1 8.5212 -5.3940 4.5601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602895333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 44.278067 kcal Electronic energy + Delta-G solvation = -20561.188326 eV Core-core repulsion = 17501.853456 eV Total energy + Delta-G solvation = -3059.334870 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.28413 -39.01065 -34.43113 -33.84965 -32.68635 -32.41452 -30.72046 -28.88788 -25.84841 -25.24948 -24.75095 -23.97673 -21.81497 -20.84414 -20.41094 -17.71501 -17.53789 -17.23698 -15.98468 -15.88795 -15.19254 -15.00769 -14.93278 -14.76862 -14.27382 -13.97715 -13.64581 -13.31111 -13.06760 -12.87041 -12.62067 -12.05525 -11.82717 -11.71542 -11.43549 -11.32438 -11.03100 -10.98736 -10.97521 -10.94665 -10.70788 -10.33541 -10.12531 -9.78021 -9.66857 -9.34442 -8.98004 -8.54155 -8.51955 -6.90638 -6.25960 -3.97731 0.67721 0.93094 3.02774 3.32129 3.39334 3.48368 3.59344 3.62199 3.87136 4.25400 4.34374 4.39787 4.47539 4.60850 4.77730 4.81155 4.86128 4.89722 5.09424 5.12773 5.17840 5.24784 5.33210 5.44664 5.51314 5.58957 5.63834 5.69548 5.77614 5.82846 5.90180 5.97665 6.03706 6.16829 6.27602 6.51954 6.68024 6.75995 6.85384 6.99482 7.97892 7.97981 8.46703 9.20129 10.83646 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.003342 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.645278 B = 8377.006108 C = 9180.443586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.237 1.237 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.213 6.213 10 C -0.082 4.082 11 C -0.091 4.091 12 C 0.051 3.949 13 N -0.488 5.488 14 C 0.033 3.967 15 C -0.120 4.120 16 C -0.108 4.108 17 C 0.127 3.873 18 H 0.078 0.922 19 C 0.333 3.667 20 N -0.521 5.521 21 C 0.145 3.855 22 C -0.235 4.235 23 C 0.146 3.854 24 N -0.480 5.480 25 H 0.270 0.730 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.167 0.833 39 H 0.146 0.854 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -16.578 4.043 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.116 4.116 3 Si 0.686 3.314 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.161 1.161 7 C -0.650 4.650 8 H 0.105 0.895 9 S 0.014 5.986 10 C -0.231 4.231 11 C -0.129 4.129 12 C -0.078 4.078 13 N -0.212 5.212 14 C -0.095 4.095 15 C -0.158 4.158 16 C -0.147 4.147 17 C 0.016 3.984 18 H 0.096 0.904 19 C 0.065 3.935 20 N -0.235 5.235 21 C -0.021 4.021 22 C -0.257 4.257 23 C -0.021 4.021 24 N -0.193 5.193 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.184 0.816 39 H 0.164 0.836 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 20.688 -15.036 3.486 25.811 hybrid contribution -1.411 -0.985 0.560 1.809 sum 19.278 -16.021 4.046 25.390 Atomic orbital electron populations 1.69940 1.05940 1.27673 1.48451 1.24790 0.94500 0.99003 0.93348 0.86670 0.81795 0.83180 0.79708 1.19370 1.20122 1.16112 1.22142 0.87215 0.97388 1.58233 0.89504 1.84144 1.11492 1.05402 1.97513 1.23019 0.97491 0.99132 1.03445 1.21228 0.94576 0.93802 1.03337 1.22326 0.87009 0.97833 1.00661 1.65234 1.12806 1.15660 1.27527 1.23166 0.95060 1.01640 0.89621 1.22280 0.98083 0.96881 0.98566 1.22255 0.94579 0.99016 0.98899 1.21243 0.98437 0.91405 0.87281 0.90383 1.22809 0.88812 0.85329 0.96581 1.68186 1.17129 1.19916 1.18263 1.23181 0.92468 0.98423 0.88039 1.22937 1.02395 0.97669 1.02674 1.23375 0.91972 0.94405 0.92342 1.68311 1.17004 1.30960 1.03056 0.92010 0.91643 0.91660 0.90675 0.91498 0.94241 0.91597 0.89260 0.93432 0.90635 0.91141 0.90793 0.90930 0.81609 0.83622 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.22 13.97 55.49 0.78 -26.44 16 2 C 0.09 2.73 5.50 -17.44 -0.10 2.63 16 3 Si 0.86 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.50 -14.93 10.04 30.94 0.31 -14.62 16 8 H 0.09 2.75 8.03 -52.49 -0.42 2.33 16 9 S -0.21 -5.37 19.41 -107.50 -2.09 -7.46 16 10 C -0.08 -1.67 5.67 37.16 0.21 -1.46 16 11 C -0.09 -1.51 5.33 -26.73 -0.14 -1.65 16 12 C 0.05 0.74 4.78 -3.83 -0.02 0.72 16 13 N -0.49 -6.35 4.80 -223.50 -1.07 -7.42 16 14 C 0.03 0.36 5.91 -2.18 -0.01 0.34 16 15 C -0.12 -1.06 7.00 -25.34 -0.18 -1.24 16 16 C -0.11 -1.04 6.54 -25.35 -0.17 -1.21 16 17 C 0.13 1.50 2.66 -67.22 -0.18 1.33 16 18 H 0.08 0.92 7.99 -51.93 -0.42 0.51 16 19 C 0.33 4.25 6.14 -157.19 -0.97 3.28 16 20 N -0.52 -6.30 10.33 -10.72 -0.11 -6.41 16 21 C 0.14 1.32 11.30 -17.20 -0.19 1.13 16 22 C -0.23 -1.86 10.17 -39.32 -0.40 -2.26 16 23 C 0.15 1.41 11.31 -17.20 -0.19 1.22 16 24 N -0.48 -6.16 10.09 -10.72 -0.11 -6.26 16 25 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 27 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.09 7.47 -51.93 -0.39 0.70 16 30 H 0.04 0.54 7.77 -51.93 -0.40 0.14 16 31 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 32 H 0.09 0.99 7.85 -51.93 -0.41 0.58 16 33 H 0.05 0.50 7.75 -51.93 -0.40 0.10 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.76 7.85 -51.93 -0.41 0.36 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 343.48 15.07 5.18 5.18 Total: -1.00 -33.86 343.48 -10.38 -44.24 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.21 Total: -0.85 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.02 Total: -11.78 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.52 Total: -46.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.09 Total: -7.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.86 -10.38 -44.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602895333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.515 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds