Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00122 * 3 2 1 5 5 H 1.48504 * 109.47347 * 30.00325 * 3 2 1 6 6 H 1.48511 * 109.47413 * 150.00015 * 3 2 1 7 7 C 1.38791 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99999 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00309 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00122 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47175 * 180.02562 * 11 10 9 13 13 N 1.46895 * 109.47024 * 180.02562 * 12 11 10 14 14 C 1.48555 * 110.99795 * 285.41221 * 13 12 11 15 15 C 1.54384 * 104.59735 * 200.96178 * 14 13 12 16 16 C 1.54266 * 105.05498 * 23.85478 * 15 14 13 17 17 C 1.48571 * 110.99779 * 170.00029 * 13 12 11 18 18 H 1.08999 * 110.51236 * 40.20725 * 17 13 12 19 19 C 1.50700 * 110.40607 * 277.81486 * 17 13 12 20 20 N 1.31794 * 119.11812 * 138.37837 * 19 17 13 21 21 C 1.32333 * 120.81891 * 179.97438 * 20 19 17 22 22 C 1.38596 * 119.10260 * 359.97438 * 21 20 19 23 23 C 1.38599 * 118.40307 * 0.02562 * 22 21 20 24 24 N 1.31794 * 119.12507 * 318.35049 * 19 17 13 25 25 H 0.96998 * 120.00054 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47162 * 60.00310 * 10 9 7 27 27 H 1.08994 * 109.47219 * 300.00177 * 10 9 7 28 28 H 1.08997 * 109.46918 * 60.00102 * 11 10 9 29 29 H 1.09000 * 109.46985 * 299.99736 * 11 10 9 30 30 H 1.08998 * 109.47049 * 59.99640 * 12 11 10 31 31 H 1.09002 * 109.47144 * 300.00150 * 12 11 10 32 32 H 1.09003 * 110.40986 * 82.18682 * 14 13 12 33 33 H 1.09001 * 110.41786 * 319.74531 * 14 13 12 34 34 H 1.09001 * 110.32393 * 264.96273 * 15 14 13 35 35 H 1.08996 * 110.32424 * 142.75232 * 15 14 13 36 36 H 1.08997 * 110.31862 * 241.09689 * 16 15 14 37 37 H 1.09007 * 110.40620 * 118.94530 * 16 15 14 38 38 H 1.08003 * 120.45132 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.79977 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.45102 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2019 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2019 -0.0001 10 6 4.0866 -2.9844 0.0017 11 6 5.5958 -3.2362 0.0021 12 6 5.8615 -4.7429 0.0030 13 7 7.3105 -4.9846 0.0040 14 6 7.8969 -4.7093 -1.3329 15 6 9.2285 -5.4905 -1.3420 16 6 9.0401 -6.6155 -0.3034 17 6 7.6108 -6.4194 0.2457 18 1 6.9062 -7.0531 -0.2929 19 6 7.5681 -6.7238 1.7210 20 7 7.0000 -7.8408 2.1293 21 6 6.9443 -8.1419 3.4167 22 6 7.4938 -7.2648 4.3385 23 6 8.0825 -6.1005 3.8710 24 7 8.1004 -5.8663 2.5686 25 1 -0.4850 0.8400 0.0004 26 1 3.6434 -3.4325 -0.8876 27 1 3.6440 -3.4305 0.8923 28 1 6.0386 -2.7882 0.8916 29 1 6.0387 -2.7901 -0.8884 30 1 5.4187 -5.1905 -0.8867 31 1 5.4185 -5.1895 0.8932 32 1 8.0817 -3.6419 -1.4545 33 1 7.2369 -5.0738 -2.1201 34 1 10.0518 -4.8389 -1.0492 35 1 9.4123 -5.9138 -2.3295 36 1 9.7710 -6.5161 0.4990 37 1 9.1321 -7.5918 -0.7796 38 1 6.4770 -9.0587 3.7447 39 1 7.4640 -7.4835 5.3957 40 1 8.5212 -5.3940 4.5601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602895333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = 21.827313 kcal Electronic energy + Delta-G solvation = -20562.161864 eV Core-core repulsion = 17501.853456 eV Total energy + Delta-G solvation = -3060.308408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.04963 -39.90459 -35.67516 -34.70888 -34.62404 -33.42105 -31.85632 -29.67925 -28.02247 -26.60989 -25.48170 -24.82799 -22.98409 -21.69162 -21.44703 -19.63519 -18.50262 -18.11356 -17.14681 -16.97373 -16.65847 -16.36701 -15.92371 -15.77329 -15.59404 -15.04206 -14.95303 -14.51445 -14.32543 -14.09508 -13.78358 -13.38513 -13.25101 -13.10746 -12.92742 -12.74288 -12.41731 -12.15900 -12.02515 -11.80598 -11.75318 -11.67222 -11.62673 -11.40607 -11.18062 -10.60682 -10.41042 -10.13102 -9.50996 -9.02067 -8.53924 -6.25886 -0.05338 0.21133 1.10074 1.31074 1.47054 1.70245 2.23744 2.57929 2.66838 2.84066 2.84384 3.04043 3.46095 3.65467 3.76235 3.79229 3.90715 4.03437 4.17413 4.21650 4.25015 4.29530 4.31910 4.34687 4.52742 4.58856 4.65261 4.68276 4.75046 4.90100 4.92402 5.03654 5.07431 5.13068 5.24010 5.28106 5.47753 5.67467 5.83464 5.95967 6.07315 6.12762 6.89870 7.20439 8.59446 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.003342 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.645278 B = 8377.006108 C = 9180.443586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.926 3.074 4 H -0.259 1.259 5 H -0.261 1.261 6 H -0.230 1.230 7 C -0.526 4.526 8 H 0.048 0.952 9 S -0.213 6.213 10 C -0.069 4.069 11 C -0.075 4.075 12 C 0.065 3.935 13 N -0.499 5.499 14 C 0.028 3.972 15 C -0.112 4.112 16 C -0.102 4.102 17 C 0.125 3.875 18 H 0.074 0.926 19 C 0.312 3.688 20 N -0.545 5.545 21 C 0.132 3.868 22 C -0.220 4.220 23 C 0.128 3.872 24 N -0.511 5.511 25 H 0.277 0.723 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.197 0.803 39 H 0.184 0.816 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.946 -16.761 4.454 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.184 1.184 5 H -0.185 1.185 6 H -0.153 1.153 7 C -0.673 4.673 8 H 0.066 0.934 9 S 0.015 5.985 10 C -0.218 4.218 11 C -0.114 4.114 12 C -0.066 4.066 13 N -0.224 5.224 14 C -0.099 4.099 15 C -0.150 4.150 16 C -0.141 4.141 17 C 0.015 3.985 18 H 0.091 0.909 19 C 0.044 3.956 20 N -0.260 5.260 21 C -0.033 4.033 22 C -0.241 4.241 23 C -0.037 4.037 24 N -0.225 5.225 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.214 0.786 39 H 0.201 0.799 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 22.728 -15.234 3.905 27.639 hybrid contribution -2.069 -1.084 0.515 2.392 sum 20.660 -16.318 4.420 26.695 Atomic orbital electron populations 1.70036 1.07680 1.29191 1.49130 1.25782 0.95422 1.02777 0.92578 0.85705 0.80719 0.78497 0.80373 1.18359 1.18538 1.15340 1.22347 0.90132 0.96261 1.58595 0.93377 1.83817 1.07445 1.09695 1.97553 1.23059 1.00204 0.95450 1.03118 1.21068 0.91426 0.95622 1.03242 1.22067 0.88538 0.95707 1.00251 1.65181 1.11303 1.16958 1.28945 1.23262 0.96137 1.01853 0.88694 1.22263 0.96863 0.96356 0.99486 1.22234 0.92913 1.00178 0.98788 1.21298 0.99523 0.90265 0.87445 0.90852 1.22894 0.89833 0.85949 0.96949 1.68188 1.17772 1.20029 1.20000 1.23824 0.92333 0.99748 0.87397 1.23313 1.00243 0.96240 1.04333 1.23917 0.92256 0.95741 0.91830 1.68268 1.18045 1.31694 1.04499 0.91317 0.91554 0.92425 0.91582 0.90629 0.93595 0.93102 0.89589 0.92904 0.90449 0.88932 0.91724 0.89322 0.78587 0.79914 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.74 13.97 21.65 0.30 -57.44 16 2 C 0.04 2.35 5.50 84.86 0.47 2.81 16 3 Si 0.93 44.90 27.74 68.60 1.90 46.80 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.23 -10.80 6.74 99.48 0.67 -10.13 16 7 C -0.53 -31.96 10.04 67.95 0.68 -31.28 16 8 H 0.05 3.18 8.03 -2.91 -0.02 3.16 16 9 S -0.21 -10.67 19.41 -56.49 -1.10 -11.76 16 10 C -0.07 -2.83 5.67 71.98 0.41 -2.42 16 11 C -0.07 -2.44 5.33 30.60 0.16 -2.28 16 12 C 0.06 1.85 4.78 86.30 0.41 2.26 16 13 N -0.50 -12.68 4.80 -861.03 -4.14 -16.82 16 14 C 0.03 0.57 5.91 86.45 0.51 1.08 16 15 C -0.11 -1.76 7.00 31.49 0.22 -1.54 16 16 C -0.10 -1.84 6.54 31.49 0.21 -1.63 16 17 C 0.12 2.90 2.66 44.31 0.12 3.02 16 18 H 0.07 1.72 7.99 -2.39 -0.02 1.70 16 19 C 0.31 7.88 6.14 138.75 0.85 8.73 16 20 N -0.55 -12.89 10.33 -187.84 -1.94 -14.83 16 21 C 0.13 2.19 11.30 84.70 0.96 3.15 16 22 C -0.22 -2.98 10.17 22.44 0.23 -2.76 16 23 C 0.13 2.32 11.31 84.70 0.96 3.27 16 24 N -0.51 -12.88 10.09 -187.84 -1.90 -14.78 16 25 H 0.28 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.07 2.70 8.14 -2.40 -0.02 2.68 16 27 H 0.06 2.43 8.14 -2.40 -0.02 2.41 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.08 2.36 7.47 -2.39 -0.02 2.34 16 30 H 0.05 1.24 7.77 -2.39 -0.02 1.22 16 31 H 0.05 1.60 7.78 -2.39 -0.02 1.58 16 32 H 0.09 1.79 7.85 -2.39 -0.02 1.77 16 33 H 0.05 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.29 7.85 -2.39 -0.02 1.27 16 37 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.38 343.48 0.29 -74.09 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.97 Total: 12.33 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 6.18 Total: -17.59 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.67 Total: -103.87 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.10 Total: -11.76 kcal Total: -74.38 0.29 -74.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602895333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.913 kcal (2) G-P(sol) polarization free energy of solvation -74.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds