Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31813 * 119.13035 * 2 1 4 4 C 1.32274 * 120.73651 * 180.02562 * 3 2 1 5 5 C 1.38840 * 119.10771 * 0.02562 * 4 3 2 6 6 C 1.37945 * 118.50519 * 359.83837 * 5 4 3 7 7 N 1.31706 * 119.13379 * 180.02562 * 2 1 3 8 8 C 1.50537 * 121.65005 * 180.45364 * 6 5 4 9 9 C 1.52965 * 109.82932 * 343.02122 * 8 6 5 10 10 N 1.47140 * 108.64288 * 50.37732 * 9 8 6 11 11 C 1.46896 * 111.00151 * 165.35695 * 10 9 8 12 12 C 1.53006 * 109.47501 * 189.18521 * 11 10 9 13 13 C 1.52999 * 109.46997 * 180.02562 * 12 11 10 14 14 S 1.81000 * 109.46638 * 180.02562 * 13 12 11 15 15 C 1.76206 * 99.99929 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99720 * 359.97438 * 15 14 13 17 17 C 1.38796 * 119.99847 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00398 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99778 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47393 * 119.99621 * 19 17 15 22 22 H 1.48503 * 109.46784 * 240.00115 * 19 17 15 23 23 C 1.46727 * 110.36871 * 288.85995 * 10 9 8 24 24 H 1.09007 * 109.46571 * 269.97506 * 1 2 3 25 25 H 1.08997 * 109.47013 * 29.97533 * 1 2 3 26 26 H 1.09001 * 109.46959 * 149.97976 * 1 2 3 27 27 H 1.07997 * 120.44174 * 179.97438 * 4 3 2 28 28 H 1.08992 * 109.41164 * 103.13449 * 8 6 5 29 29 H 1.09004 * 109.41069 * 222.91472 * 8 6 5 30 30 H 1.09000 * 109.60376 * 290.63153 * 9 8 6 31 31 H 1.08997 * 109.61000 * 170.12206 * 9 8 6 32 32 H 1.09000 * 109.47017 * 69.18667 * 11 10 9 33 33 H 1.08996 * 109.47227 * 309.18987 * 11 10 9 34 34 H 1.09000 * 109.46866 * 60.00053 * 12 11 10 35 35 H 1.09001 * 109.46611 * 300.00170 * 12 11 10 36 36 H 1.09000 * 109.47486 * 60.00167 * 13 12 11 37 37 H 1.09001 * 109.47362 * 299.99445 * 13 12 11 38 38 H 0.96996 * 120.00393 * 180.02562 * 18 17 15 39 39 H 1.09006 * 109.32256 * 172.49094 * 23 10 9 40 40 H 1.08997 * 109.32284 * 291.94371 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1487 1.1514 0.0000 4 6 3.4710 1.1885 -0.0005 5 6 4.1801 -0.0052 -0.0016 6 6 3.4742 -1.1903 0.0013 7 7 2.1483 -1.1504 -0.0005 8 6 4.1709 -2.5247 0.0105 9 6 5.6326 -2.3497 -0.4047 10 7 6.2250 -1.2713 0.4023 11 6 7.6906 -1.2851 0.3048 12 6 8.2790 -0.3084 1.3250 13 6 9.8055 -0.3224 1.2230 14 16 10.5014 0.8325 2.4305 15 6 12.2195 0.6190 2.1031 16 1 12.5417 -0.0727 1.3389 17 6 13.1588 1.3390 2.8282 18 7 12.7662 2.1817 3.7600 19 14 14.9803 1.1131 2.4807 20 1 15.1570 0.1165 1.3941 21 1 15.5693 2.4108 2.0632 22 1 15.6626 0.6320 3.7088 23 6 5.6830 0.0293 -0.0069 24 1 -0.3633 -0.0004 1.0278 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 3.9918 2.1345 -0.0009 28 1 4.1275 -2.9491 1.0135 29 1 3.6739 -3.1977 -0.6882 30 1 5.6837 -2.0864 -1.4612 31 1 6.1762 -3.2782 -0.2299 32 1 7.9908 -0.9860 -0.6995 33 1 8.0590 -2.2903 0.5097 34 1 7.9788 -0.6075 2.3293 35 1 7.9106 0.6968 1.1199 36 1 10.1053 -0.0230 0.2187 37 1 10.1742 -1.3275 1.4278 38 1 13.4226 2.6851 4.2665 39 1 6.0286 0.7978 0.6847 40 1 6.0348 0.2670 -1.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = 13.107251 kcal Electronic energy + Delta-G solvation = -20166.314045 eV Core-core repulsion = 17105.627506 eV Total energy + Delta-G solvation = -3060.686539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.38118 -39.44053 -35.87862 -34.95243 -34.59199 -33.47343 -31.80828 -30.20934 -27.86840 -26.82837 -26.02694 -24.52685 -23.87142 -22.12534 -20.99950 -19.54284 -18.87782 -17.44579 -17.08891 -16.88855 -16.48723 -16.37349 -15.91395 -15.54434 -15.46598 -14.91849 -14.66109 -14.36243 -14.25965 -13.80310 -13.73701 -13.31657 -13.26280 -13.24594 -13.00219 -12.93946 -12.81158 -12.58073 -12.32340 -12.22548 -11.76020 -11.65140 -11.47191 -11.27049 -11.14246 -10.28701 -10.26187 -10.13094 -9.36259 -8.64751 -8.36494 -6.12175 -0.15180 0.02292 1.32473 1.38831 1.50180 1.76686 2.29386 2.63388 2.75813 2.91489 2.97884 3.14041 3.34172 3.46083 3.65706 3.78473 4.02873 4.11054 4.20890 4.26294 4.33449 4.37460 4.39636 4.54152 4.58032 4.65118 4.69553 4.74230 4.81038 4.82607 4.86406 4.94754 4.98642 5.11594 5.21105 5.34476 5.41292 5.47035 5.90009 5.97854 6.07857 6.19452 7.06106 7.06532 8.73030 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.002519 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.737249 B =11114.912767 C =11660.439859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.294 3.706 3 N -0.539 5.539 4 C 0.150 3.850 5 C -0.194 4.194 6 C 0.177 3.823 7 N -0.537 5.537 8 C -0.062 4.062 9 C 0.054 3.946 10 N -0.544 5.544 11 C 0.072 3.928 12 C -0.084 4.084 13 C -0.086 4.086 14 S -0.202 6.202 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.013 3.987 18 N -0.908 5.908 19 Si 0.994 3.006 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.102 3.898 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.191 0.809 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.271 0.729 39 H 0.095 0.905 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.193 -8.343 -11.137 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.027 3.973 3 N -0.254 5.254 4 C -0.017 4.017 5 C -0.198 4.198 6 C 0.032 3.968 7 N -0.252 5.252 8 C -0.100 4.100 9 C -0.074 4.074 10 N -0.269 5.269 11 C -0.057 4.057 12 C -0.123 4.123 13 C -0.236 4.236 14 S 0.026 5.974 15 C -0.683 4.683 16 H 0.092 0.908 17 C -0.192 4.192 18 N -0.545 5.545 19 Si 0.816 3.184 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.027 4.027 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.208 0.792 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.796 -7.639 -9.755 25.071 hybrid contribution 2.859 -0.282 -1.451 3.218 sum -18.937 -7.921 -11.205 23.386 Atomic orbital electron populations 1.20644 0.83598 1.04908 1.04691 1.23900 0.99676 0.83326 0.90385 1.68342 1.10353 1.30800 1.15927 1.23602 0.89483 0.99132 0.89434 1.21275 0.98530 0.95215 1.04828 1.21708 0.89158 0.96756 0.89139 1.68278 1.09705 1.30933 1.16276 1.20557 0.93718 0.91094 1.04609 1.22260 0.94002 0.95915 0.95256 1.62216 1.06078 1.03373 1.55206 1.22052 0.85556 1.00548 0.97508 1.21179 0.90905 0.99950 1.00287 1.23150 0.98878 1.00935 1.00626 1.84684 1.05775 1.56359 1.50552 1.23071 0.91262 1.29402 1.24534 0.90835 1.26075 1.04907 0.94030 0.94148 1.70161 1.36313 1.25535 1.22459 0.84968 0.76380 0.78503 0.78533 1.18548 1.19768 1.19805 1.20817 0.88149 0.93107 1.00632 0.88733 0.88824 0.88760 0.79208 0.88347 0.87433 0.93515 0.87492 0.93592 0.89182 0.91771 0.91764 0.91818 0.91744 0.92034 0.88700 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.32 71.24 0.74 -0.41 16 2 C 0.29 6.56 7.64 138.77 1.06 7.62 16 3 N -0.54 -12.69 10.34 -187.74 -1.94 -14.63 16 4 C 0.15 3.17 10.98 84.77 0.93 4.10 16 5 C -0.19 -4.16 5.79 -19.90 -0.12 -4.28 16 6 C 0.18 3.89 6.67 42.31 0.28 4.18 16 7 N -0.54 -12.58 10.25 -176.51 -1.81 -14.39 16 8 C -0.06 -1.02 6.22 29.78 0.19 -0.84 16 9 C 0.05 0.83 5.57 86.25 0.48 1.31 16 10 N -0.54 -11.09 4.68 -901.40 -4.22 -15.31 16 11 C 0.07 1.58 4.95 86.31 0.43 2.01 16 12 C -0.08 -2.50 5.14 30.60 0.16 -2.34 16 13 C -0.09 -3.28 5.67 71.98 0.41 -2.88 16 14 S -0.20 -10.61 21.44 -56.49 -1.21 -11.83 16 15 C -0.53 -30.56 9.50 67.95 0.65 -29.91 16 16 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 17 C 0.01 0.74 5.49 84.86 0.47 1.21 16 18 N -0.91 -54.71 13.22 21.65 0.29 -54.42 16 19 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C 0.10 2.03 4.94 85.47 0.42 2.45 16 24 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 0.69 8.05 -2.39 -0.02 0.67 16 31 H 0.11 1.32 7.86 -2.39 -0.02 1.30 16 32 H 0.05 0.94 8.07 -2.39 -0.02 0.92 16 33 H 0.09 1.81 7.90 -2.39 -0.02 1.79 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 1.92 6.64 -2.39 -0.02 1.90 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.09 2.00 6.65 -2.38 -0.02 1.98 16 40 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 Total: -1.00 -70.68 342.24 0.24 -70.44 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.02 Total: 12.27 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 6.08 Total: -17.78 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -7.68 Total: -98.75 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -10.61 SS G_CDS: -1.21 Total: -11.83 kcal Total: -70.68 0.24 -70.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.552 kcal (2) G-P(sol) polarization free energy of solvation -70.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds