Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02733 * 179.97438 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.46840 * 304.99877 * 11 10 9 13 13 O 1.42898 * 109.47059 * 65.00150 * 11 10 9 14 14 C 1.53001 * 109.46921 * 184.99905 * 11 10 9 15 15 N 1.46503 * 109.46922 * 179.97438 * 14 11 10 16 16 C 1.34774 * 119.99651 * 180.02562 * 15 14 11 17 17 O 1.21685 * 120.00371 * 359.97438 * 16 15 14 18 18 C 1.46376 * 119.99726 * 180.02562 * 16 15 14 19 19 H 1.07997 * 119.99875 * 359.97438 * 18 16 15 20 20 C 1.40055 * 120.00200 * 179.97438 * 18 16 15 21 21 N 1.30673 * 119.99712 * 0.02562 * 20 18 16 22 22 Si 1.86791 * 120.00235 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47259 * 60.00237 * 22 20 18 24 24 H 1.48497 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47251 * 300.00418 * 22 20 18 26 26 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 27 27 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 28 28 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 29 29 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 31 31 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47191 * 89.99678 * 7 6 5 33 33 H 1.09008 * 109.46862 * 209.99778 * 7 6 5 34 34 H 1.08995 * 109.47123 * 329.99512 * 7 6 5 35 35 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 36 36 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 37 37 H 0.96704 * 114.00063 * 59.99833 * 13 11 10 38 38 H 1.09004 * 109.47365 * 300.00098 * 14 11 10 39 39 H 1.09006 * 109.47155 * 60.00084 * 14 11 10 40 40 H 0.97000 * 119.99908 * 0.02562 * 15 14 11 41 41 H 0.97000 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 -0.0003 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 1 -0.4285 -4.0830 0.4198 13 8 1.3026 -5.2107 0.4293 14 6 -0.0203 -4.8003 2.4096 15 7 -0.7440 -6.0587 2.2122 16 6 -1.2458 -6.7211 3.2732 17 8 -1.0974 -6.2742 4.3953 18 6 -1.9684 -7.9787 3.0760 19 1 -2.0998 -8.3755 2.0802 20 6 -2.4894 -8.6674 4.1786 21 7 -2.3309 -8.1869 5.3835 22 14 -3.4122 -10.2718 3.9269 23 1 -2.5160 -11.2615 3.2766 24 1 -3.8593 -10.7973 5.2418 25 1 -4.5952 -10.0321 3.0620 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1313 -0.0004 30 1 4.1197 2.1327 0.0107 31 1 5.3552 0.0039 0.0106 32 1 4.5246 -2.8176 1.0272 33 1 3.7608 -3.2608 -0.5184 34 1 5.2997 -2.3663 -0.5103 35 1 2.1104 -3.1353 1.8209 36 1 0.5677 -2.2476 1.8171 37 1 2.0980 -5.4156 0.9397 38 1 0.8480 -4.9759 3.0447 39 1 -0.6785 -4.0741 2.8868 40 1 -0.8620 -6.4152 1.3178 41 1 -2.6914 -8.6641 6.1472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613993416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -116.799400 kcal Electronic energy + Delta-G solvation = -22949.982200 eV Core-core repulsion = 19408.616865 eV Total energy + Delta-G solvation = -3541.365336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42597 -38.36335 -37.21802 -36.25822 -33.78871 -33.08515 -32.23292 -31.43797 -30.03346 -27.46057 -26.84082 -26.48670 -24.62890 -21.95295 -21.63878 -21.08818 -19.72290 -17.89131 -17.25021 -16.82594 -16.62623 -15.67929 -15.53577 -15.35796 -14.71346 -14.35076 -14.04277 -13.99137 -13.73978 -13.42230 -13.31305 -13.18768 -12.95800 -12.82774 -12.76751 -12.24082 -12.10376 -11.76039 -11.49169 -11.48063 -11.35288 -11.17261 -10.88955 -10.70955 -10.46514 -10.27328 -9.99723 -9.86450 -8.84787 -8.81089 -8.68087 -7.64903 -7.54295 -6.19248 -4.64271 0.98832 1.10358 3.15222 3.16749 3.21419 3.23839 3.68467 4.11697 4.46186 4.53810 4.58676 4.60645 4.73243 4.74302 4.98987 5.02590 5.14440 5.18493 5.22387 5.32804 5.38828 5.42027 5.45562 5.50221 5.58584 5.59816 5.62877 5.84389 5.91956 6.06818 6.22353 6.24031 6.24563 6.36610 6.39119 6.57456 7.43468 7.44494 7.74884 7.93971 8.07049 8.32716 9.02271 9.52505 10.59059 10.77191 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034084 B = 0.002702 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.298365 B =10361.478086 C =10628.269940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.116 4.116 8 C 0.095 3.905 9 O -0.321 6.321 10 C 0.038 3.962 11 C 0.103 3.897 12 H 0.110 0.890 13 O -0.548 6.548 14 C 0.107 3.893 15 N -0.760 5.760 16 C 0.554 3.446 17 O -0.584 6.584 18 C -0.544 4.544 19 H 0.068 0.932 20 C 0.087 3.913 21 N -0.769 5.769 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.268 1.268 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.373 0.627 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.386 0.614 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.968 16.258 -11.181 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.098 4.098 7 C -0.172 4.172 8 C 0.051 3.949 9 O -0.238 6.238 10 C -0.037 4.037 11 C 0.043 3.957 12 H 0.127 0.873 13 O -0.352 6.352 14 C -0.019 4.019 15 N -0.417 5.417 16 C 0.359 3.641 17 O -0.467 6.467 18 C -0.581 4.581 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.398 5.398 22 Si 0.734 3.266 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.193 1.193 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.220 0.780 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.218 0.782 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.515 16.480 -10.739 22.304 hybrid contribution 0.030 -0.645 0.130 0.658 sum 10.545 15.835 -10.609 21.783 Atomic orbital electron populations 1.20730 0.90553 1.02888 1.02759 1.20279 0.96876 0.92525 1.00292 1.20928 0.94193 0.97104 1.01286 1.21126 0.94244 0.98019 1.00473 1.20936 0.99779 0.91537 1.01300 1.20272 0.93087 0.96303 1.00188 1.20746 0.99607 0.94412 1.02445 1.18407 0.89463 0.85300 1.01748 1.86068 1.74476 1.34383 1.28834 1.23484 0.99641 0.95915 0.84627 1.22175 0.92982 0.85207 0.95311 0.87269 1.86603 1.36730 1.62396 1.49519 1.21374 0.97060 0.89487 0.93997 1.46006 1.61537 1.23572 1.10593 1.18231 0.78691 0.84642 0.82570 1.90595 1.62677 1.69855 1.23553 1.20851 1.37094 1.06074 0.94086 0.91371 1.25717 0.94697 0.98256 0.94597 1.70013 1.34947 1.36110 0.98741 0.86413 0.80186 0.81968 0.78053 1.19244 1.20588 1.19261 0.90817 0.91130 0.91549 0.85777 0.85910 0.85799 0.91301 0.90251 0.91550 0.92378 0.91758 0.78022 0.92993 0.92402 0.78166 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.79 36.01 0.35 -0.75 16 2 C -0.10 -1.10 5.89 -104.47 -0.62 -1.72 16 3 C -0.12 -1.10 9.70 -39.60 -0.38 -1.49 16 4 C -0.12 -1.06 10.04 -39.56 -0.40 -1.46 16 5 C -0.12 -1.10 9.70 -39.61 -0.38 -1.49 16 6 C -0.10 -1.08 5.89 -104.47 -0.62 -1.70 16 7 C -0.12 -1.10 9.79 36.01 0.35 -0.75 16 8 C 0.09 1.16 5.67 -39.22 -0.22 0.94 16 9 O -0.32 -4.23 8.29 -24.26 -0.20 -4.43 16 10 C 0.04 0.48 5.32 37.16 0.20 0.67 16 11 C 0.10 1.46 3.33 -26.73 -0.09 1.37 16 12 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 13 O -0.55 -7.94 13.05 -40.08 -0.52 -8.47 16 14 C 0.11 1.95 5.34 -4.04 -0.02 1.93 16 15 N -0.76 -16.96 5.44 -61.72 -0.34 -17.30 16 16 C 0.55 15.81 7.75 -12.99 -0.10 15.71 16 17 O -0.58 -18.88 15.02 5.20 0.08 -18.80 16 18 C -0.54 -15.48 9.54 -35.63 -0.34 -15.82 16 19 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 20 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 21 N -0.77 -23.16 11.83 55.55 0.66 -22.50 16 22 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.74 6.30 -51.93 -0.33 0.42 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.85 7.53 -51.92 -0.39 0.46 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.76 7.23 -51.93 -0.38 0.39 16 37 H 0.37 4.34 9.05 45.56 0.41 4.76 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 7.89 8.33 -40.82 -0.34 7.55 16 41 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -35.50 351.54 -7.63 -43.13 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.21 Total: 10.05 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -2.36 Total: -2.20 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.32 Total: -39.80 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.65 Total: -31.70 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.50 -7.63 -43.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613993416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.668 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds