Wall clock time and date at job start Tue Mar 31 2020 06:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02733 * 179.97438 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.53002 * 109.47152 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.46840 * 304.99877 * 11 10 9 13 13 O 1.42898 * 109.47059 * 65.00150 * 11 10 9 14 14 C 1.53001 * 109.46921 * 184.99905 * 11 10 9 15 15 N 1.46503 * 109.46922 * 179.97438 * 14 11 10 16 16 C 1.34774 * 119.99651 * 180.02562 * 15 14 11 17 17 O 1.21685 * 120.00371 * 359.97438 * 16 15 14 18 18 C 1.46376 * 119.99726 * 180.02562 * 16 15 14 19 19 H 1.07997 * 119.99875 * 359.97438 * 18 16 15 20 20 C 1.40055 * 120.00200 * 179.97438 * 18 16 15 21 21 N 1.30673 * 119.99712 * 0.02562 * 20 18 16 22 22 Si 1.86791 * 120.00235 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47259 * 60.00237 * 22 20 18 24 24 H 1.48497 * 109.47349 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47251 * 300.00418 * 22 20 18 26 26 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 27 27 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 28 28 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 29 29 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 31 31 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47191 * 89.99678 * 7 6 5 33 33 H 1.09008 * 109.46862 * 209.99778 * 7 6 5 34 34 H 1.08995 * 109.47123 * 329.99512 * 7 6 5 35 35 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 36 36 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 37 37 H 0.96704 * 114.00063 * 59.99833 * 13 11 10 38 38 H 1.09004 * 109.47365 * 300.00098 * 14 11 10 39 39 H 1.09006 * 109.47155 * 60.00084 * 14 11 10 40 40 H 0.97000 * 119.99908 * 0.02562 * 15 14 11 41 41 H 0.97000 * 120.00026 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 -0.0003 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4398 -4.2587 1.0547 12 1 -0.4285 -4.0830 0.4198 13 8 1.3026 -5.2107 0.4293 14 6 -0.0203 -4.8003 2.4096 15 7 -0.7440 -6.0587 2.2122 16 6 -1.2458 -6.7211 3.2732 17 8 -1.0974 -6.2742 4.3953 18 6 -1.9684 -7.9787 3.0760 19 1 -2.0998 -8.3755 2.0802 20 6 -2.4894 -8.6674 4.1786 21 7 -2.3309 -8.1869 5.3835 22 14 -3.4122 -10.2718 3.9269 23 1 -2.5160 -11.2615 3.2766 24 1 -3.8593 -10.7973 5.2418 25 1 -4.5952 -10.0321 3.0620 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1313 -0.0004 30 1 4.1197 2.1327 0.0107 31 1 5.3552 0.0039 0.0106 32 1 4.5246 -2.8176 1.0272 33 1 3.7608 -3.2608 -0.5184 34 1 5.2997 -2.3663 -0.5103 35 1 2.1104 -3.1353 1.8209 36 1 0.5677 -2.2476 1.8171 37 1 2.0980 -5.4156 0.9397 38 1 0.8480 -4.9759 3.0447 39 1 -0.6785 -4.0741 2.8868 40 1 -0.8620 -6.4152 1.3178 41 1 -2.6914 -8.6641 6.1472 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613993416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:19 Heat of formation + Delta-G solvation = -143.043813 kcal Electronic energy + Delta-G solvation = -22951.120244 eV Core-core repulsion = 19408.616865 eV Total energy + Delta-G solvation = -3542.503379 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26375 -39.79895 -38.72918 -37.53916 -34.98120 -34.53003 -34.29783 -32.30289 -31.30553 -28.88497 -27.90218 -27.55271 -26.10627 -22.93882 -22.74839 -21.83946 -21.73344 -19.35018 -18.68148 -17.85151 -17.75749 -17.46989 -16.73751 -16.27678 -16.08850 -15.85213 -15.51567 -15.10920 -15.00154 -14.51853 -14.32933 -14.27227 -14.03204 -13.88781 -13.88031 -13.58645 -13.18700 -13.10390 -12.84563 -12.67532 -12.62657 -12.49105 -12.27255 -12.22794 -12.05981 -11.88588 -11.15303 -10.92468 -10.84677 -9.91071 -9.54637 -9.52111 -9.47119 -8.30341 -6.86574 0.20587 0.36267 1.40644 1.43942 1.55705 2.19379 2.30687 2.45784 2.80020 3.19904 3.40968 3.61642 3.79499 3.86520 3.89985 3.91856 3.98731 4.08723 4.30891 4.35406 4.37729 4.47845 4.59942 4.63469 4.69796 4.73064 4.76508 4.86742 4.91543 4.99193 5.18364 5.31413 5.32468 5.50983 5.51338 5.61449 5.85059 5.86605 6.18084 6.24584 6.56048 6.71377 6.85925 7.51577 8.46781 8.65694 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034084 B = 0.002702 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.298365 B =10361.478086 C =10628.269940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.115 4.115 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.112 4.112 8 C 0.064 3.936 9 O -0.331 6.331 10 C 0.047 3.953 11 C 0.123 3.877 12 H 0.109 0.891 13 O -0.557 6.557 14 C 0.109 3.891 15 N -0.749 5.749 16 C 0.538 3.462 17 O -0.633 6.633 18 C -0.574 4.574 19 H 0.086 0.914 20 C 0.029 3.971 21 N -0.822 5.822 22 Si 0.999 3.001 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.385 0.615 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.397 0.603 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.472 16.606 -12.497 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.116 4.116 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.114 4.114 7 C -0.169 4.169 8 C 0.021 3.979 9 O -0.249 6.249 10 C -0.028 4.028 11 C 0.063 3.937 12 H 0.127 0.873 13 O -0.363 6.363 14 C -0.017 4.017 15 N -0.404 5.404 16 C 0.343 3.657 17 O -0.520 6.520 18 C -0.611 4.611 19 H 0.104 0.896 20 C -0.187 4.187 21 N -0.451 5.451 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.179 1.179 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.164 0.836 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.234 0.766 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.231 0.769 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.049 16.852 -12.115 23.512 hybrid contribution -0.038 -0.630 0.497 0.803 sum 11.011 16.222 -11.618 22.790 Atomic orbital electron populations 1.20738 0.90161 1.03037 1.02918 1.20519 0.97493 0.92888 1.00682 1.21250 0.94817 0.97339 1.00590 1.21523 0.94195 0.99050 0.98807 1.21264 1.01026 0.91158 1.00556 1.20523 0.92878 0.97508 1.00470 1.20729 0.99952 0.93512 1.02690 1.18694 0.90208 0.85177 1.03848 1.86028 1.74885 1.35207 1.28739 1.23278 0.99775 0.94873 0.84921 1.21855 0.93320 0.85933 0.92588 0.87300 1.86574 1.37368 1.62533 1.49861 1.21486 0.96145 0.87562 0.96479 1.45660 1.60636 1.24349 1.09732 1.18582 0.78899 0.85315 0.82949 1.90548 1.64619 1.71172 1.25683 1.21406 1.37616 1.06648 0.95394 0.89584 1.26979 0.95208 1.02672 0.93795 1.70175 1.36324 1.38468 1.00144 0.85060 0.78727 0.75994 0.78449 1.17856 1.19811 1.17868 0.90635 0.92452 0.89913 0.83617 0.83062 0.83569 0.90899 0.91835 0.89877 0.91585 0.91442 0.76572 0.93577 0.93296 0.76937 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 9.79 71.24 0.70 -1.43 16 2 C -0.12 -2.46 5.89 -19.77 -0.12 -2.58 16 3 C -0.12 -2.06 9.70 22.26 0.22 -1.84 16 4 C -0.12 -1.76 10.04 22.28 0.22 -1.54 16 5 C -0.12 -2.03 9.70 22.25 0.22 -1.82 16 6 C -0.11 -2.38 5.89 -19.77 -0.12 -2.50 16 7 C -0.11 -2.04 9.79 71.24 0.70 -1.34 16 8 C 0.06 1.55 5.67 22.51 0.13 1.67 16 9 O -0.33 -8.73 8.29 -87.75 -0.73 -9.46 16 10 C 0.05 1.16 5.32 71.98 0.38 1.54 16 11 C 0.12 3.49 3.33 30.60 0.10 3.59 16 12 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 13 O -0.56 -15.86 13.05 -144.34 -1.88 -17.74 16 14 C 0.11 4.04 5.34 86.38 0.46 4.50 16 15 N -0.75 -33.89 5.44 -467.39 -2.54 -36.44 16 16 C 0.54 31.47 7.75 86.36 0.67 32.14 16 17 O -0.63 -42.46 15.02 -4.30 -0.06 -42.52 16 18 C -0.57 -32.92 9.54 24.83 0.24 -32.69 16 19 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 20 C 0.03 1.61 5.50 85.31 0.47 2.08 16 21 N -0.82 -50.54 11.83 21.84 0.26 -50.28 16 22 Si 1.00 41.19 29.56 68.60 2.03 43.22 16 23 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.22 6.30 -2.39 -0.02 1.20 16 28 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 29 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 30 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 31 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.34 7.53 -2.38 -0.02 1.33 16 34 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.62 7.23 -2.39 -0.02 1.60 16 37 H 0.39 8.77 9.05 -74.05 -0.67 8.10 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.40 16.19 8.33 -92.71 -0.77 15.42 16 41 H 0.28 15.31 8.29 -92.71 -0.77 14.54 16 Total: -1.00 -78.39 351.54 0.94 -77.45 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.39 Total: 36.00 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.27 Total: -0.22 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.29 Total: -86.72 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -2.68 Total: -69.73 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -78.39 0.94 -77.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613993416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.595 kcal (2) G-P(sol) polarization free energy of solvation -78.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds