Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99621 * 2 1 4 4 H 1.48502 * 109.46706 * 239.99991 * 3 2 1 5 5 H 1.48502 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 120.00052 * 3 2 1 7 7 C 1.37872 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99778 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88613 * 62.42780 * 9 7 2 11 11 C 1.55156 * 111.00444 * 298.54210 * 9 7 2 12 12 C 1.54326 * 102.94360 * 206.38653 * 11 9 7 13 13 N 1.47027 * 107.27134 * 22.19246 * 12 11 9 14 14 C 1.34771 * 125.64838 * 181.02160 * 13 12 11 15 15 O 1.21278 * 119.99770 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00166 * 0.02651 * 14 13 12 17 17 H 1.08998 * 110.45952 * 302.41865 * 16 14 13 18 18 C 1.54611 * 110.41212 * 64.83521 * 16 14 13 19 19 C 1.55976 * 104.46171 * 118.44682 * 18 16 14 20 20 H 1.09002 * 116.07865 * 161.71537 * 19 18 16 21 21 C 1.55960 * 104.31090 * 290.79472 * 19 18 16 22 22 C 1.52171 * 104.87311 * 70.37931 * 21 19 18 23 23 O 1.20764 * 127.33289 * 179.70087 * 22 21 19 24 24 C 1.53526 * 105.34088 * 359.69963 * 22 21 19 25 25 H 1.08998 * 115.84366 * 161.07536 * 24 22 21 26 26 C 1.56929 * 100.83839 * 34.04249 * 24 22 21 27 27 C 1.47426 * 108.69988 * 1.29005 * 13 12 11 28 28 H 0.96996 * 120.00220 * 359.97438 * 1 2 3 29 29 H 0.96700 * 113.99914 * 297.56482 * 10 9 7 30 30 H 1.08998 * 110.71620 * 88.02528 * 11 9 7 31 31 H 1.08994 * 110.87417 * 324.81958 * 11 9 7 32 32 H 1.09003 * 109.88402 * 262.77705 * 12 11 9 33 33 H 1.08998 * 109.88331 * 141.61068 * 12 11 9 34 34 H 1.09002 * 110.43561 * 359.70451 * 18 16 14 35 35 H 1.09000 * 110.54003 * 237.24439 * 18 16 14 36 36 H 1.09007 * 110.35780 * 311.53341 * 21 19 18 37 37 H 1.09000 * 110.36549 * 189.23131 * 21 19 18 38 38 H 1.08999 * 112.09183 * 63.25678 * 26 24 22 39 39 H 1.09000 * 112.08863 * 189.93888 * 26 24 22 40 40 H 1.08998 * 110.36941 * 94.48041 * 27 13 12 41 41 H 1.09002 * 110.36490 * 216.80636 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1832 11 6 0.3733 -2.6344 1.2727 12 6 0.2572 -4.1629 1.4516 13 7 1.3930 -4.7726 0.7445 14 6 1.6399 -6.0939 0.6472 15 8 2.6117 -6.4859 0.0367 16 6 0.7083 -7.0844 1.2970 17 1 0.6297 -6.8886 2.3663 18 6 -0.6873 -7.0270 0.6341 19 6 -0.8952 -8.4541 0.0398 20 1 -1.9226 -8.7285 -0.1995 21 6 0.1280 -8.5354 -1.1345 22 6 1.4913 -8.5969 -0.4611 23 8 2.5704 -8.6730 -0.9977 24 6 1.2028 -8.5416 1.0458 25 1 2.0050 -8.8901 1.6963 26 6 -0.1547 -9.3259 1.1154 27 6 2.2207 -3.6989 0.1652 28 1 -0.4850 0.8400 0.0004 29 1 -0.2243 -1.9564 -1.2761 30 1 -0.6087 -2.1892 1.1126 31 1 0.8647 -2.1816 2.1337 32 1 -0.6800 -4.5164 1.0216 33 1 0.3006 -4.4165 2.5107 34 1 -0.7018 -6.2789 -0.1584 35 1 -1.4547 -6.8086 1.3767 36 1 0.0553 -7.6478 -1.7630 37 1 -0.0438 -9.4348 -1.7257 38 1 -0.0456 -10.3630 0.7981 39 1 -0.6221 -9.2499 2.0971 40 1 3.0355 -3.4411 0.8417 41 1 2.6138 -4.0042 -0.8045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000649029564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = -110.603643 kcal Electronic energy + Delta-G solvation = -24901.102817 eV Core-core repulsion = 21360.006150 eV Total energy + Delta-G solvation = -3541.096668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.26053 -38.92920 -37.27064 -36.96504 -34.33215 -32.25695 -30.89213 -29.61329 -28.96239 -28.14394 -27.15719 -25.11244 -22.94112 -21.51790 -20.38919 -19.85711 -19.17193 -18.23600 -17.25528 -16.66957 -16.52434 -15.73431 -15.28798 -14.98289 -14.87323 -14.37170 -13.98092 -13.71865 -13.49643 -13.18372 -13.04385 -12.51224 -12.40820 -12.16597 -11.93654 -11.71096 -11.65089 -11.45978 -11.36947 -11.29712 -11.15471 -10.94768 -10.83805 -10.64223 -10.59279 -10.51775 -10.05197 -9.44189 -9.27800 -9.05512 -8.70780 -8.26480 -8.01023 -6.31544 -4.39503 2.32852 3.00713 3.20126 3.24863 3.28265 3.46799 4.11735 4.24302 4.25723 4.30622 4.59687 4.85809 4.88489 4.98588 5.05058 5.13633 5.19019 5.33339 5.51561 5.56117 5.61859 5.66020 5.68377 5.76232 5.81595 5.86236 5.91323 5.96321 6.04221 6.09485 6.26537 6.40669 6.63311 6.85376 6.92995 7.25738 7.30211 7.70144 7.88745 7.99068 8.11151 8.59383 8.63939 9.27203 9.35934 10.75839 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.004228 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.708552 B = 6620.862603 C = 6897.822683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.249 3.751 10 O -0.582 6.582 11 C -0.136 4.136 12 C 0.097 3.903 13 N -0.603 5.603 14 C 0.515 3.485 15 O -0.537 6.537 16 C -0.101 4.101 17 H 0.105 0.895 18 C -0.117 4.117 19 C -0.095 4.095 20 H 0.113 0.887 21 C -0.183 4.183 22 C 0.376 3.624 23 O -0.419 6.419 24 C -0.136 4.136 25 H 0.114 0.886 26 C -0.118 4.118 27 C 0.120 3.880 28 H 0.268 0.732 29 H 0.380 0.620 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 -13.785 5.214 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.730 3.270 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.175 4.175 12 C -0.026 4.026 13 N -0.336 5.336 14 C 0.302 3.698 15 O -0.415 6.415 16 C -0.122 4.122 17 H 0.123 0.877 18 C -0.155 4.155 19 C -0.113 4.113 20 H 0.131 0.869 21 C -0.221 4.221 22 C 0.248 3.752 23 O -0.288 6.288 24 C -0.155 4.155 25 H 0.132 0.868 26 C -0.155 4.155 27 C -0.002 4.002 28 H 0.078 0.922 29 H 0.230 0.770 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.535 -14.478 4.488 16.136 hybrid contribution -0.051 1.694 0.338 1.729 sum -5.586 -12.783 4.826 14.762 Atomic orbital electron populations 1.69699 1.05955 1.27749 1.50093 1.24968 0.95010 0.99474 0.93394 0.86483 0.79570 0.82057 0.78924 1.19982 1.21101 1.20040 1.21413 0.93724 0.90216 1.52119 0.91808 1.19623 0.86974 0.90630 0.81886 1.86140 1.51525 1.56877 1.44531 1.23178 1.03189 0.89945 1.01192 1.22261 0.88759 0.96789 0.94803 1.48573 1.27268 1.04840 1.52879 1.20170 0.86293 0.82047 0.81249 1.90810 1.29733 1.77877 1.43081 1.22287 0.95482 0.92690 1.01772 0.87654 1.22773 0.94539 0.97370 1.00823 1.23555 0.98237 0.95137 0.94339 0.86881 1.23225 0.95192 1.04328 0.99325 1.24970 0.89319 0.69803 0.91132 1.90383 1.29524 1.35417 1.73476 1.24052 0.98713 0.94639 0.98128 0.86776 1.23532 0.93973 0.98318 0.99697 1.22423 0.93759 0.86083 0.97933 0.92174 0.77012 0.89512 0.91397 0.92094 0.92975 0.90206 0.90117 0.88615 0.88778 0.90443 0.89819 0.91073 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.76 55.43 0.60 -21.97 16 2 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.86 8.27 -34.44 -0.28 -14.15 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.91 0.87 -89.50 -0.08 5.83 16 10 O -0.58 -14.52 13.17 -35.23 -0.46 -14.98 16 11 C -0.14 -2.82 5.37 -24.90 -0.13 -2.96 16 12 C 0.10 1.65 6.17 -3.06 -0.02 1.63 16 13 N -0.60 -11.69 3.32 -170.37 -0.57 -12.26 16 14 C 0.51 9.59 6.61 -10.99 -0.07 9.52 16 15 O -0.54 -12.13 13.32 -17.41 -0.23 -12.36 16 16 C -0.10 -1.33 2.53 -89.37 -0.23 -1.55 16 17 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.12 -1.29 4.44 -24.29 -0.11 -1.40 16 19 C -0.09 -0.85 5.24 -85.27 -0.45 -1.30 16 20 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.18 -2.19 6.10 -25.57 -0.16 -2.35 16 22 C 0.38 5.91 5.22 -26.88 -0.14 5.77 16 23 O -0.42 -8.52 16.44 -16.98 -0.28 -8.80 16 24 C -0.14 -1.69 4.65 -86.66 -0.40 -2.09 16 25 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 26 C -0.12 -0.99 6.45 -22.43 -0.14 -1.13 16 27 C 0.12 2.69 6.10 -2.41 -0.01 2.67 16 28 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 29 H 0.38 9.40 7.57 45.56 0.34 9.75 16 30 H 0.09 1.87 7.54 -51.93 -0.39 1.48 16 31 H 0.07 1.43 8.04 -51.93 -0.42 1.02 16 32 H 0.06 0.95 6.50 -51.93 -0.34 0.62 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.08 6.79 -51.93 -0.35 0.73 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.30 7.84 -51.93 -0.41 0.89 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 1.57 8.04 -51.93 -0.42 1.15 16 41 H 0.07 1.70 8.03 -51.93 -0.42 1.28 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -30.99 322.76 -8.75 -39.74 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.32 Total: 10.48 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.32 Total: 0.28 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.03 Total: -34.23 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.98 Total: -36.15 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.99 -8.75 -39.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.864 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds