Wall clock time and date at job start Tue Mar 31 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 119.99621 * 2 1 4 4 H 1.48502 * 109.46706 * 239.99991 * 3 2 1 5 5 H 1.48502 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47359 * 120.00052 * 3 2 1 7 7 C 1.37872 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99778 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.88613 * 62.42780 * 9 7 2 11 11 C 1.55156 * 111.00444 * 298.54210 * 9 7 2 12 12 C 1.54326 * 102.94360 * 206.38653 * 11 9 7 13 13 N 1.47027 * 107.27134 * 22.19246 * 12 11 9 14 14 C 1.34771 * 125.64838 * 181.02160 * 13 12 11 15 15 O 1.21278 * 119.99770 * 180.02562 * 14 13 12 16 16 C 1.50699 * 120.00166 * 0.02651 * 14 13 12 17 17 H 1.08998 * 110.45952 * 302.41865 * 16 14 13 18 18 C 1.54611 * 110.41212 * 64.83521 * 16 14 13 19 19 C 1.55976 * 104.46171 * 118.44682 * 18 16 14 20 20 H 1.09002 * 116.07865 * 161.71537 * 19 18 16 21 21 C 1.55960 * 104.31090 * 290.79472 * 19 18 16 22 22 C 1.52171 * 104.87311 * 70.37931 * 21 19 18 23 23 O 1.20764 * 127.33289 * 179.70087 * 22 21 19 24 24 C 1.53526 * 105.34088 * 359.69963 * 22 21 19 25 25 H 1.08998 * 115.84366 * 161.07536 * 24 22 21 26 26 C 1.56929 * 100.83839 * 34.04249 * 24 22 21 27 27 C 1.47426 * 108.69988 * 1.29005 * 13 12 11 28 28 H 0.96996 * 120.00220 * 359.97438 * 1 2 3 29 29 H 0.96700 * 113.99914 * 297.56482 * 10 9 7 30 30 H 1.08998 * 110.71620 * 88.02528 * 11 9 7 31 31 H 1.08994 * 110.87417 * 324.81958 * 11 9 7 32 32 H 1.09003 * 109.88402 * 262.77705 * 12 11 9 33 33 H 1.08998 * 109.88331 * 141.61068 * 12 11 9 34 34 H 1.09002 * 110.43561 * 359.70451 * 18 16 14 35 35 H 1.09000 * 110.54003 * 237.24439 * 18 16 14 36 36 H 1.09007 * 110.35780 * 311.53341 * 21 19 18 37 37 H 1.09000 * 110.36549 * 189.23131 * 21 19 18 38 38 H 1.08999 * 112.09183 * 63.25678 * 26 24 22 39 39 H 1.09000 * 112.08863 * 189.93888 * 26 24 22 40 40 H 1.08998 * 110.36941 * 94.48041 * 27 13 12 41 41 H 1.09002 * 110.36490 * 216.80636 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 0.4617 -2.6316 -1.1832 11 6 0.3733 -2.6344 1.2727 12 6 0.2572 -4.1629 1.4516 13 7 1.3930 -4.7726 0.7445 14 6 1.6399 -6.0939 0.6472 15 8 2.6117 -6.4859 0.0367 16 6 0.7083 -7.0844 1.2970 17 1 0.6297 -6.8886 2.3663 18 6 -0.6873 -7.0270 0.6341 19 6 -0.8952 -8.4541 0.0398 20 1 -1.9226 -8.7285 -0.1995 21 6 0.1280 -8.5354 -1.1345 22 6 1.4913 -8.5969 -0.4611 23 8 2.5704 -8.6730 -0.9977 24 6 1.2028 -8.5416 1.0458 25 1 2.0050 -8.8901 1.6963 26 6 -0.1547 -9.3259 1.1154 27 6 2.2207 -3.6989 0.1652 28 1 -0.4850 0.8400 0.0004 29 1 -0.2243 -1.9564 -1.2761 30 1 -0.6087 -2.1892 1.1126 31 1 0.8647 -2.1816 2.1337 32 1 -0.6800 -4.5164 1.0216 33 1 0.3006 -4.4165 2.5107 34 1 -0.7018 -6.2789 -0.1584 35 1 -1.4547 -6.8086 1.3767 36 1 0.0553 -7.6478 -1.7630 37 1 -0.0438 -9.4348 -1.7257 38 1 -0.0456 -10.3630 0.7981 39 1 -0.6221 -9.2499 2.0971 40 1 3.0355 -3.4411 0.8417 41 1 2.6138 -4.0042 -0.8045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000649029564.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:47 Heat of formation + Delta-G solvation = -131.550896 kcal Electronic energy + Delta-G solvation = -24902.011158 eV Core-core repulsion = 21360.006150 eV Total energy + Delta-G solvation = -3542.005009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36704 -40.43383 -38.80997 -38.30328 -36.11003 -34.23978 -32.21015 -31.01579 -30.12257 -29.57619 -28.16285 -26.87178 -24.37862 -22.75318 -21.66291 -21.12994 -20.55973 -19.49176 -19.10109 -17.96922 -17.62119 -17.03871 -16.90845 -16.68538 -16.24752 -16.06650 -15.34192 -15.25038 -14.74505 -14.54701 -14.26702 -14.03282 -13.77292 -13.54976 -13.45390 -13.25093 -13.07615 -12.92969 -12.67619 -12.48946 -12.44728 -12.31838 -12.27069 -12.04201 -11.88330 -11.64108 -11.43468 -11.29074 -10.80637 -10.62977 -10.19006 -10.17326 -9.58736 -8.25925 -6.40768 1.15805 1.41351 1.43624 1.50224 1.58364 2.02301 2.38758 2.98688 3.13580 3.35321 3.41996 3.60462 3.73636 3.88156 3.97440 4.02431 4.13794 4.23422 4.30903 4.34305 4.43037 4.48908 4.55401 4.69786 4.74856 4.78743 4.86340 4.92908 5.03671 5.09426 5.15775 5.18399 5.23845 5.27817 5.33873 5.44243 5.53964 5.75446 6.07186 6.59327 6.63713 6.75103 7.13809 7.29498 7.38448 8.79715 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.004228 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.708552 B = 6620.862603 C = 6897.822683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.042 3.958 3 Si 0.956 3.044 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.568 4.568 8 H 0.049 0.951 9 C 0.237 3.763 10 O -0.593 6.593 11 C -0.126 4.126 12 C 0.104 3.896 13 N -0.607 5.607 14 C 0.504 3.496 15 O -0.587 6.587 16 C -0.094 4.094 17 H 0.140 0.860 18 C -0.118 4.118 19 C -0.074 4.074 20 H 0.153 0.847 21 C -0.188 4.188 22 C 0.356 3.644 23 O -0.484 6.484 24 C -0.143 4.143 25 H 0.112 0.888 26 C -0.097 4.097 27 C 0.124 3.876 28 H 0.272 0.728 29 H 0.378 0.622 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.997 -14.965 7.605 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.160 4.160 3 Si 0.782 3.218 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.606 4.606 8 H 0.067 0.933 9 C 0.197 3.803 10 O -0.402 6.402 11 C -0.165 4.165 12 C -0.017 4.017 13 N -0.338 5.338 14 C 0.294 3.706 15 O -0.468 6.468 16 C -0.115 4.115 17 H 0.158 0.842 18 C -0.155 4.155 19 C -0.092 4.092 20 H 0.171 0.829 21 C -0.225 4.225 22 C 0.233 3.767 23 O -0.359 6.359 24 C -0.162 4.162 25 H 0.130 0.870 26 C -0.134 4.134 27 C 0.001 3.999 28 H 0.082 0.918 29 H 0.228 0.772 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.686 -15.662 6.910 19.196 hybrid contribution 0.970 2.090 -0.483 2.355 sum -7.715 -13.572 6.427 16.883 Atomic orbital electron populations 1.69747 1.06436 1.28485 1.49430 1.25529 0.95862 1.01715 0.92884 0.85645 0.78583 0.79049 0.78518 1.20752 1.20027 1.19637 1.21632 0.93398 0.91948 1.53625 0.93317 1.19756 0.87602 0.90149 0.82775 1.86131 1.51604 1.56751 1.45679 1.22946 1.01675 0.92882 0.98963 1.22336 0.88621 0.93790 0.96981 1.48664 1.27410 1.04791 1.52975 1.21381 0.86487 0.82229 0.80479 1.90805 1.32236 1.78556 1.45208 1.22437 0.95134 0.90769 1.03136 0.84193 1.22861 0.93792 0.97969 1.00924 1.23688 0.99133 0.94010 0.92365 0.82926 1.23333 0.94341 1.04138 1.00711 1.26005 0.89664 0.67382 0.93694 1.90340 1.32073 1.38338 1.75115 1.24192 1.01292 0.95344 0.95412 0.87034 1.23573 0.90385 0.98221 1.01224 1.22137 0.94167 0.87230 0.96410 0.91827 0.77242 0.90266 0.92094 0.89874 0.89001 0.93215 0.86112 0.91103 0.86668 0.88909 0.86271 0.91479 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.24 10.76 21.45 0.23 -45.01 16 2 C 0.04 2.14 5.29 84.65 0.45 2.59 16 3 Si 0.96 41.15 29.54 68.60 2.03 43.18 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.57 -30.22 8.27 25.60 0.21 -30.01 16 8 H 0.05 2.65 7.79 -2.91 -0.02 2.63 16 9 C 0.24 11.54 0.87 -10.07 -0.01 11.54 16 10 O -0.59 -30.47 13.17 -148.98 -1.96 -32.43 16 11 C -0.13 -5.13 5.37 31.78 0.17 -4.96 16 12 C 0.10 3.31 6.17 86.73 0.53 3.85 16 13 N -0.61 -23.48 3.32 -811.33 -2.70 -26.18 16 14 C 0.50 18.81 6.61 87.66 0.58 19.39 16 15 O -0.59 -27.98 13.32 18.94 0.25 -27.73 16 16 C -0.09 -2.18 2.53 -9.98 -0.03 -2.21 16 17 H 0.14 2.35 8.14 -2.39 -0.02 2.34 16 18 C -0.12 -2.08 4.44 32.17 0.14 -1.94 16 19 C -0.07 -0.98 5.24 -7.33 -0.04 -1.02 16 20 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 21 C -0.19 -4.27 6.10 31.35 0.19 -4.08 16 22 C 0.36 11.34 5.22 30.50 0.16 11.49 16 23 O -0.48 -21.10 16.44 20.50 0.34 -20.76 16 24 C -0.14 -3.23 4.65 -8.23 -0.04 -3.27 16 25 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 26 C -0.10 -1.10 6.45 33.38 0.22 -0.89 16 27 C 0.12 5.84 6.10 86.93 0.53 6.37 16 28 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 29 H 0.38 19.13 7.57 -74.06 -0.56 18.57 16 30 H 0.08 3.34 7.54 -2.39 -0.02 3.32 16 31 H 0.06 2.53 8.04 -2.39 -0.02 2.51 16 32 H 0.08 2.31 6.50 -2.39 -0.02 2.30 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.22 6.79 -2.39 -0.02 1.21 16 35 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.98 7.84 -2.38 -0.02 1.96 16 37 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 3.14 8.04 -2.39 -0.02 3.12 16 41 H 0.03 1.80 8.03 -2.39 -0.02 1.78 16 Total: -1.00 -74.39 322.76 1.74 -72.65 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.49 Total: 29.41 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 3.07 Total: 6.86 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -2.47 Total: -71.19 kcal Atomic # 8 Polarization: -79.54 SS G_CDS: -1.37 Total: -80.92 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -74.39 1.74 -72.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000649029564.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.902 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds