Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.50531 * 2 1 4 4 O 1.43757 * 109.62915 * 239.68684 * 2 1 3 5 5 C 1.44784 * 104.81176 * 264.42951 * 4 2 1 6 6 C 1.54908 * 101.72292 * 323.89809 * 5 4 2 7 7 H 1.08996 * 110.84391 * 277.09053 * 6 5 4 8 8 C 1.53002 * 110.69566 * 153.95839 * 6 5 4 9 9 N 1.46500 * 109.47441 * 184.88836 * 8 6 5 10 10 C 1.39777 * 120.00516 * 180.02562 * 9 8 6 11 11 C 1.38952 * 120.00679 * 179.97438 * 10 9 8 12 12 C 1.38015 * 119.98917 * 179.97438 * 11 10 9 13 13 C 1.38889 * 120.00953 * 0.02562 * 12 11 10 14 14 O 1.35798 * 119.99643 * 179.97438 * 13 12 11 15 15 C 1.34811 * 116.99873 * 5.54528 * 14 13 12 16 16 H 1.08001 * 120.00060 * 354.93568 * 15 14 13 17 17 C 1.38620 * 120.00157 * 174.94499 * 15 14 13 18 18 N 1.31584 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47165 * 269.99553 * 19 17 15 21 21 H 1.48505 * 109.47431 * 149.99768 * 19 17 15 22 22 H 1.48502 * 109.47547 * 29.99511 * 19 17 15 23 23 C 1.38901 * 120.01125 * 0.26917 * 13 12 11 24 24 C 1.38004 * 120.00586 * 359.45211 * 23 13 12 25 25 O 1.43362 * 109.63519 * 120.31897 * 2 1 3 26 26 H 1.09000 * 109.47157 * 299.67411 * 1 2 3 27 27 H 1.08996 * 109.47497 * 59.68187 * 1 2 3 28 28 H 1.09001 * 109.47126 * 179.68517 * 1 2 3 29 29 H 1.09003 * 109.47020 * 180.32328 * 3 2 1 30 30 H 1.09001 * 109.47166 * 300.32513 * 3 2 1 31 31 H 1.08997 * 109.47041 * 60.32168 * 3 2 1 32 32 H 1.08997 * 110.97784 * 205.78738 * 5 4 2 33 33 H 1.09000 * 110.97851 * 82.00725 * 5 4 2 34 34 H 1.08996 * 109.47025 * 64.88877 * 8 6 5 35 35 H 1.08995 * 109.47471 * 304.89043 * 8 6 5 36 36 H 0.97004 * 119.99575 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.00306 * 359.95869 * 11 10 9 38 38 H 1.08008 * 119.99257 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99909 * 0.02562 * 18 17 15 40 40 H 1.08008 * 119.99658 * 179.71031 * 23 13 12 41 41 H 1.08002 * 120.00481 * 180.29513 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 8 2.0129 -0.6834 -1.1689 5 6 2.2652 -2.0390 -0.7273 6 6 2.7885 -1.8087 0.7124 7 1 3.8511 -1.5661 0.7047 8 6 2.5224 -3.0355 1.5871 9 7 2.9203 -2.7470 2.9672 10 6 2.7711 -3.7233 3.9563 11 6 3.1491 -3.4498 5.2652 12 6 3.0011 -4.4139 6.2417 13 6 2.4750 -5.6573 5.9161 14 8 2.3300 -6.6059 6.8770 15 6 2.6070 -6.2402 8.1447 16 1 3.0058 -5.2574 8.3483 17 6 2.3802 -7.1257 9.1868 18 7 1.8940 -8.3230 8.9388 19 14 2.7647 -6.6192 10.9432 20 1 4.1671 -6.9841 11.2678 21 1 1.8431 -7.3196 11.8735 22 1 2.5897 -5.1514 11.0848 23 6 2.1028 -5.9330 4.6066 24 6 2.2452 -4.9675 3.6309 25 8 2.0117 -0.6816 1.1656 26 1 -0.3633 0.5088 0.8929 27 1 -0.3634 0.5187 -0.8871 28 1 -0.3633 -1.0277 -0.0056 29 1 3.1309 1.4415 -0.0058 30 1 1.6731 1.9579 -0.8871 31 1 1.6825 1.9545 0.8928 32 1 3.0245 -2.5163 -1.3468 33 1 1.3458 -2.6243 -0.7194 34 1 3.0988 -3.8811 1.2120 35 1 1.4603 -3.2787 1.5586 36 1 3.2874 -1.8784 3.1945 37 1 3.5588 -2.4832 5.5183 38 1 3.2952 -4.2015 7.2590 39 1 1.6946 -8.5861 8.0267 40 1 1.6980 -6.9017 4.3528 41 1 1.9513 -5.1803 2.6136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715126025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = -92.430513 kcal Electronic energy + Delta-G solvation = -22867.434690 eV Core-core repulsion = 19327.126069 eV Total energy + Delta-G solvation = -3540.308621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.00305 -39.08408 -37.26370 -35.58599 -34.66536 -33.06779 -31.98154 -30.37876 -29.86434 -27.83478 -27.34596 -25.39920 -24.36156 -22.69412 -21.52423 -21.47615 -20.71774 -18.21268 -17.90243 -17.10865 -16.81981 -16.32764 -15.53090 -15.39963 -14.81835 -14.64462 -14.12375 -13.94070 -13.86596 -13.66045 -13.56295 -13.23015 -12.99165 -12.77664 -12.71805 -12.51672 -12.50532 -12.47566 -12.06305 -11.83660 -11.46317 -11.26080 -10.90305 -10.80751 -10.53186 -10.26427 -10.20726 -9.98342 -9.29176 -9.21320 -8.41588 -8.22982 -6.64222 -6.45794 -3.90937 2.14146 2.51579 2.94614 3.29328 3.35969 3.48771 3.49247 3.67904 4.21366 4.31504 4.37721 4.43562 4.60324 4.63189 4.66701 4.92530 5.07934 5.17052 5.21267 5.21972 5.27991 5.31974 5.35336 5.48566 5.52274 5.60753 5.67563 5.70824 5.75585 5.81430 6.14477 6.18564 6.46721 6.75962 6.80323 6.85596 7.05562 7.36387 7.46656 7.67718 7.90402 8.18110 8.54553 9.07221 9.79205 10.81025 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.002569 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.896298 B =10898.664756 C =11232.251036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.248 3.752 3 C -0.154 4.154 4 O -0.373 6.373 5 C 0.025 3.975 6 C 0.042 3.958 7 H 0.091 0.909 8 C 0.139 3.861 9 N -0.753 5.753 10 C 0.127 3.873 11 C -0.140 4.140 12 C -0.185 4.185 13 C 0.116 3.884 14 O -0.213 6.213 15 C -0.468 4.468 16 H 0.080 0.920 17 C 0.006 3.994 18 N -0.890 5.890 19 Si 1.098 2.902 20 H -0.282 1.282 21 H -0.277 1.277 22 H -0.284 1.284 23 C -0.153 4.153 24 C -0.147 4.147 25 O -0.367 6.367 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.107 0.893 38 H 0.129 0.871 39 H 0.281 0.719 40 H 0.115 0.885 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 16.005 -18.975 24.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.211 4.211 4 O -0.293 6.293 5 C -0.052 4.052 6 C -0.016 4.016 7 H 0.109 0.891 8 C 0.014 3.986 9 N -0.390 5.390 10 C 0.029 3.971 11 C -0.162 4.162 12 C -0.204 4.204 13 C 0.064 3.936 14 O -0.119 6.119 15 C -0.545 4.545 16 H 0.098 0.902 17 C -0.198 4.198 18 N -0.524 5.524 19 Si 0.923 3.077 20 H -0.209 1.209 21 H -0.202 1.202 22 H -0.210 1.210 23 C -0.173 4.173 24 C -0.169 4.169 25 O -0.288 6.288 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.125 0.875 38 H 0.146 0.854 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.399 15.265 -17.520 23.241 hybrid contribution 0.208 0.907 -1.586 1.839 sum 0.607 16.172 -19.107 25.040 Atomic orbital electron populations 1.22371 0.93764 1.03439 1.03286 1.23407 0.93072 0.91470 0.74879 1.22068 1.02426 0.93381 1.03222 1.89254 1.86033 1.21815 1.32236 1.24327 1.01806 0.85096 0.94003 1.24025 0.96856 0.87205 0.93534 0.89128 1.21200 1.00243 0.94313 0.82887 1.44005 1.74325 1.15479 1.05177 1.17390 1.01887 0.89501 0.88359 1.20256 1.05464 0.99202 0.91323 1.21014 1.05624 0.93908 0.99894 1.19083 0.96188 0.88792 0.89525 1.83670 1.78080 1.34293 1.15852 1.22137 1.47700 1.03781 0.80862 0.90250 1.26432 0.95747 0.93563 1.04062 1.70547 1.38437 1.18617 1.24753 0.83064 0.76943 0.75250 0.72475 1.20881 1.20197 1.20975 1.19991 1.06637 0.99819 0.90833 1.20133 1.05857 0.92644 0.98309 1.88976 1.69376 1.41385 1.29089 0.90589 0.90729 0.91765 0.91492 0.90770 0.90370 0.87018 0.90199 0.91368 0.92225 0.77094 0.87466 0.85353 0.90935 0.86681 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 9.19 37.16 0.34 -1.08 16 2 C 0.25 2.35 1.47 -26.73 -0.04 2.31 16 3 C -0.15 -1.21 9.24 37.16 0.34 -0.86 16 4 O -0.37 -3.64 11.01 -59.04 -0.65 -4.29 16 5 C 0.02 0.19 7.36 38.16 0.28 0.47 16 6 C 0.04 0.38 3.76 -25.72 -0.10 0.29 16 7 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.14 1.50 4.68 -4.04 -0.02 1.48 16 9 N -0.75 -10.34 5.67 -58.59 -0.33 -10.67 16 10 C 0.13 2.21 6.66 -83.71 -0.56 1.66 16 11 C -0.14 -2.66 9.89 -39.40 -0.39 -3.05 16 12 C -0.18 -4.15 9.16 -39.42 -0.36 -4.51 16 13 C 0.12 2.87 6.65 -39.09 -0.26 2.61 16 14 O -0.21 -6.17 9.16 -0.05 0.00 -6.17 16 15 C -0.47 -13.55 9.48 30.87 0.29 -13.25 16 16 H 0.08 2.17 5.20 -52.49 -0.27 1.89 16 17 C 0.01 0.17 5.49 -17.52 -0.10 0.08 16 18 N -0.89 -27.29 13.70 55.48 0.76 -26.53 16 19 Si 1.10 24.43 29.91 -169.99 -5.09 19.35 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 24 C -0.15 -2.66 9.30 -39.40 -0.37 -3.02 16 25 O -0.37 -4.05 10.44 -59.04 -0.62 -4.67 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.56 8.03 -51.93 -0.42 0.15 16 34 H 0.07 0.67 7.95 -51.93 -0.41 0.25 16 35 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 36 H 0.40 5.09 8.43 -40.82 -0.34 4.74 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.13 2.93 5.63 -52.48 -0.30 2.63 16 39 H 0.28 8.80 7.97 -40.82 -0.33 8.47 16 40 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.11 1.65 6.73 -52.49 -0.35 1.30 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -32.94 342.64 -7.94 -40.87 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.86 Total: 7.49 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -1.32 Total: -20.55 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.43 Total: -37.20 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.27 Total: -15.13 kcal Atomic # 14 Polarization: 24.43 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.94 -7.94 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715126025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.559 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds