Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.50531 * 2 1 4 4 O 1.43757 * 109.62915 * 239.68684 * 2 1 3 5 5 C 1.44784 * 104.81176 * 264.42951 * 4 2 1 6 6 C 1.54908 * 101.72292 * 323.89809 * 5 4 2 7 7 H 1.08996 * 110.84391 * 277.09053 * 6 5 4 8 8 C 1.53002 * 110.69566 * 153.95839 * 6 5 4 9 9 N 1.46500 * 109.47441 * 184.88836 * 8 6 5 10 10 C 1.39777 * 120.00516 * 180.02562 * 9 8 6 11 11 C 1.38952 * 120.00679 * 179.97438 * 10 9 8 12 12 C 1.38015 * 119.98917 * 179.97438 * 11 10 9 13 13 C 1.38889 * 120.00953 * 0.02562 * 12 11 10 14 14 O 1.35798 * 119.99643 * 179.97438 * 13 12 11 15 15 C 1.34811 * 116.99873 * 5.54528 * 14 13 12 16 16 H 1.08001 * 120.00060 * 354.93568 * 15 14 13 17 17 C 1.38620 * 120.00157 * 174.94499 * 15 14 13 18 18 N 1.31584 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47165 * 269.99553 * 19 17 15 21 21 H 1.48505 * 109.47431 * 149.99768 * 19 17 15 22 22 H 1.48502 * 109.47547 * 29.99511 * 19 17 15 23 23 C 1.38901 * 120.01125 * 0.26917 * 13 12 11 24 24 C 1.38004 * 120.00586 * 359.45211 * 23 13 12 25 25 O 1.43362 * 109.63519 * 120.31897 * 2 1 3 26 26 H 1.09000 * 109.47157 * 299.67411 * 1 2 3 27 27 H 1.08996 * 109.47497 * 59.68187 * 1 2 3 28 28 H 1.09001 * 109.47126 * 179.68517 * 1 2 3 29 29 H 1.09003 * 109.47020 * 180.32328 * 3 2 1 30 30 H 1.09001 * 109.47166 * 300.32513 * 3 2 1 31 31 H 1.08997 * 109.47041 * 60.32168 * 3 2 1 32 32 H 1.08997 * 110.97784 * 205.78738 * 5 4 2 33 33 H 1.09000 * 110.97851 * 82.00725 * 5 4 2 34 34 H 1.08996 * 109.47025 * 64.88877 * 8 6 5 35 35 H 1.08995 * 109.47471 * 304.89043 * 8 6 5 36 36 H 0.97004 * 119.99575 * 0.02562 * 9 8 6 37 37 H 1.07999 * 120.00306 * 359.95869 * 11 10 9 38 38 H 1.08008 * 119.99257 * 179.97438 * 12 11 10 39 39 H 0.96998 * 119.99909 * 0.02562 * 18 17 15 40 40 H 1.08008 * 119.99658 * 179.71031 * 23 13 12 41 41 H 1.08002 * 120.00481 * 180.29513 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 8 2.0129 -0.6834 -1.1689 5 6 2.2652 -2.0390 -0.7273 6 6 2.7885 -1.8087 0.7124 7 1 3.8511 -1.5661 0.7047 8 6 2.5224 -3.0355 1.5871 9 7 2.9203 -2.7470 2.9672 10 6 2.7711 -3.7233 3.9563 11 6 3.1491 -3.4498 5.2652 12 6 3.0011 -4.4139 6.2417 13 6 2.4750 -5.6573 5.9161 14 8 2.3300 -6.6059 6.8770 15 6 2.6070 -6.2402 8.1447 16 1 3.0058 -5.2574 8.3483 17 6 2.3802 -7.1257 9.1868 18 7 1.8940 -8.3230 8.9388 19 14 2.7647 -6.6192 10.9432 20 1 4.1671 -6.9841 11.2678 21 1 1.8431 -7.3196 11.8735 22 1 2.5897 -5.1514 11.0848 23 6 2.1028 -5.9330 4.6066 24 6 2.2452 -4.9675 3.6309 25 8 2.0117 -0.6816 1.1656 26 1 -0.3633 0.5088 0.8929 27 1 -0.3634 0.5187 -0.8871 28 1 -0.3633 -1.0277 -0.0056 29 1 3.1309 1.4415 -0.0058 30 1 1.6731 1.9579 -0.8871 31 1 1.6825 1.9545 0.8928 32 1 3.0245 -2.5163 -1.3468 33 1 1.3458 -2.6243 -0.7194 34 1 3.0988 -3.8811 1.2120 35 1 1.4603 -3.2787 1.5586 36 1 3.2874 -1.8784 3.1945 37 1 3.5588 -2.4832 5.5183 38 1 3.2952 -4.2015 7.2590 39 1 1.6946 -8.5861 8.0267 40 1 1.6980 -6.9017 4.3528 41 1 1.9513 -5.1803 2.6136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715126025.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = -114.781064 kcal Electronic energy + Delta-G solvation = -22868.403883 eV Core-core repulsion = 19327.126069 eV Total energy + Delta-G solvation = -3541.277814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70700 -40.79178 -38.89317 -36.59299 -35.67215 -34.27977 -33.69030 -31.92543 -30.91804 -28.75719 -28.35727 -27.01423 -25.80165 -23.95659 -22.71908 -22.41589 -22.08657 -20.09630 -18.81496 -18.56311 -17.96879 -17.28525 -17.04320 -16.28960 -16.04452 -15.70411 -15.64420 -15.44459 -15.36835 -14.92528 -14.58814 -14.45112 -14.11184 -14.08901 -13.63515 -13.59625 -13.20411 -13.16792 -13.11894 -12.92814 -12.71566 -12.64899 -12.46358 -12.16280 -12.07484 -11.91099 -11.22601 -11.17313 -10.90833 -10.67910 -10.24967 -9.85022 -8.86804 -8.01552 -6.12062 0.51153 0.85885 1.50002 1.64027 1.79070 2.24129 2.40722 2.54861 2.90524 2.92588 3.19915 3.48097 3.56095 3.66854 3.81659 3.93467 3.97914 4.05769 4.11477 4.32593 4.43470 4.50388 4.53326 4.58562 4.62659 4.65153 4.74747 4.75174 4.85856 4.89533 4.99270 5.13031 5.14666 5.20257 5.20684 5.45099 5.47749 5.76596 5.87356 6.08903 6.30274 6.54955 6.93396 6.96241 7.77229 8.59477 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037783 B = 0.002569 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.896298 B =10898.664756 C =11232.251036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.240 3.760 3 C -0.153 4.153 4 O -0.385 6.385 5 C 0.024 3.976 6 C 0.044 3.956 7 H 0.099 0.901 8 C 0.133 3.867 9 N -0.742 5.742 10 C 0.156 3.844 11 C -0.147 4.147 12 C -0.191 4.191 13 C 0.063 3.937 14 O -0.262 6.262 15 C -0.481 4.481 16 H 0.087 0.913 17 C -0.051 4.051 18 N -0.925 5.925 19 Si 1.147 2.853 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.154 4.154 24 C -0.145 4.145 25 O -0.388 6.388 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.259 0.741 40 H 0.117 0.883 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 18.487 -21.053 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.164 3.836 3 C -0.210 4.210 4 O -0.306 6.306 5 C -0.052 4.052 6 C -0.013 4.013 7 H 0.117 0.883 8 C 0.009 3.991 9 N -0.377 5.377 10 C 0.055 3.945 11 C -0.169 4.169 12 C -0.210 4.210 13 C 0.014 3.986 14 O -0.171 6.171 15 C -0.557 4.557 16 H 0.104 0.896 17 C -0.246 4.246 18 N -0.561 5.561 19 Si 0.964 3.036 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.173 4.173 24 C -0.167 4.167 25 O -0.310 6.310 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.238 0.762 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.067 0.933 40 H 0.135 0.865 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.025 17.820 -19.692 26.578 hybrid contribution 0.029 0.380 -1.341 1.394 sum 1.054 18.200 -21.033 27.833 Atomic orbital electron populations 1.22376 0.93254 1.03285 1.03859 1.23604 0.93554 0.91947 0.74472 1.22078 1.02224 0.92739 1.03952 1.89248 1.86122 1.22770 1.32460 1.24488 1.02875 0.84528 0.93330 1.24035 0.97205 0.86158 0.93936 0.88316 1.21449 1.00562 0.95941 0.81194 1.44152 1.72929 1.14818 1.05754 1.17526 0.98513 0.89813 0.88625 1.20495 1.05531 0.99600 0.91315 1.21054 1.05617 0.94027 1.00331 1.19626 0.99231 0.89645 0.90127 1.83633 1.80713 1.36404 1.16359 1.22533 1.47338 1.04178 0.81671 0.89580 1.28312 0.94871 0.92942 1.08424 1.70689 1.42046 1.20289 1.23087 0.82539 0.77623 0.76249 0.67238 1.18991 1.19899 1.18514 1.20257 1.05932 1.00865 0.90269 1.20458 1.05049 0.91923 0.99254 1.88954 1.69746 1.42047 1.30205 0.90641 0.89571 0.92267 0.91803 0.89680 0.90043 0.84647 0.89498 0.89353 0.92151 0.76206 0.84553 0.86613 0.93304 0.86518 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.19 71.98 0.66 -1.81 16 2 C 0.24 3.95 1.47 30.59 0.04 4.00 16 3 C -0.15 -2.06 9.24 71.98 0.66 -1.39 16 4 O -0.39 -6.42 11.01 -126.22 -1.39 -7.81 16 5 C 0.02 0.29 7.36 72.63 0.53 0.82 16 6 C 0.04 0.65 3.76 31.25 0.12 0.77 16 7 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 8 C 0.13 2.29 4.68 86.38 0.40 2.69 16 9 N -0.74 -17.34 5.67 -339.27 -1.92 -19.26 16 10 C 0.16 4.97 6.66 38.22 0.25 5.22 16 11 C -0.15 -5.28 9.89 22.39 0.22 -5.06 16 12 C -0.19 -8.65 9.16 22.37 0.20 -8.45 16 13 C 0.06 3.20 6.65 22.58 0.15 3.35 16 14 O -0.26 -16.07 9.16 -23.08 -0.21 -16.29 16 15 C -0.48 -29.10 9.48 67.91 0.64 -28.45 16 16 H 0.09 4.88 5.20 -2.91 -0.02 4.86 16 17 C -0.05 -3.01 5.49 84.82 0.47 -2.54 16 18 N -0.92 -59.59 13.70 21.61 0.30 -59.29 16 19 Si 1.15 49.85 29.91 68.60 2.05 51.91 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.15 -6.55 9.98 22.37 0.22 -6.32 16 24 C -0.14 -4.83 9.30 22.38 0.21 -4.62 16 25 O -0.39 -7.43 10.44 -126.22 -1.32 -8.75 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.14 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.09 0.92 8.03 -2.39 -0.02 0.90 16 34 H 0.09 1.26 7.95 -2.39 -0.02 1.25 16 35 H 0.06 1.10 7.93 -2.39 -0.02 1.08 16 36 H 0.40 8.71 8.43 -92.71 -0.78 7.93 16 37 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 39 H 0.26 17.36 7.97 -92.71 -0.74 16.62 16 40 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 41 H 0.15 3.80 6.73 -2.91 -0.02 3.78 16 Total: -1.00 -75.65 342.64 2.60 -73.06 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.29 Total: 28.22 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 4.80 Total: -41.78 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.63 Total: -78.56 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -2.92 Total: -32.85 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.05 Total: 51.91 kcal Total: -75.65 2.60 -73.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715126025.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.726 kcal (2) G-P(sol) polarization free energy of solvation -75.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds