Wall clock time and date at job start Tue Mar 31 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.51001 * 2 1 4 4 O 1.43372 * 109.63198 * 120.31834 * 2 1 3 5 5 C 1.44197 * 107.28928 * 119.20724 * 4 2 1 6 6 C 1.54919 * 103.07353 * 338.56261 * 5 4 2 7 7 H 1.08994 * 110.98209 * 277.44928 * 6 5 4 8 8 C 1.53010 * 110.97406 * 153.66642 * 6 5 4 9 9 N 1.46498 * 109.46839 * 180.02562 * 8 6 5 10 10 C 1.39677 * 119.99750 * 180.02562 * 9 8 6 11 11 C 1.39006 * 120.03908 * 359.71972 * 10 9 8 12 12 C 1.38146 * 120.06153 * 179.76879 * 11 10 9 13 13 C 1.38171 * 120.14272 * 0.51355 * 12 11 10 14 14 C 1.38917 * 120.07916 * 359.74033 * 13 12 11 15 15 O 1.35747 * 120.03689 * 180.02562 * 14 13 12 16 16 C 1.34832 * 117.00455 * 174.43651 * 15 14 13 17 17 H 1.07994 * 119.99979 * 5.05891 * 16 15 14 18 18 C 1.38648 * 120.00014 * 185.05367 * 16 15 14 19 19 N 1.31560 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47243 * 90.00087 * 20 18 16 22 22 H 1.48502 * 109.47018 * 210.00324 * 20 18 16 23 23 H 1.48508 * 109.46958 * 330.00096 * 20 18 16 24 24 C 1.38744 * 120.03676 * 179.97438 * 10 9 8 25 25 O 1.43753 * 109.62840 * 239.68091 * 2 1 3 26 26 H 1.09002 * 109.46846 * 301.13541 * 1 2 3 27 27 H 1.08992 * 109.47172 * 61.13242 * 1 2 3 28 28 H 1.09000 * 109.46937 * 181.13909 * 1 2 3 29 29 H 1.09001 * 109.47559 * 178.86559 * 3 2 1 30 30 H 1.09004 * 109.46997 * 298.86899 * 3 2 1 31 31 H 1.09005 * 109.47002 * 58.86116 * 3 2 1 32 32 H 1.08993 * 110.69443 * 96.95757 * 5 4 2 33 33 H 1.08996 * 110.69334 * 220.16763 * 5 4 2 34 34 H 1.08999 * 109.46924 * 300.00201 * 8 6 5 35 35 H 1.09009 * 109.46536 * 60.00056 * 8 6 5 36 36 H 0.97000 * 120.00123 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.96751 * 0.02562 * 11 10 9 38 38 H 1.07997 * 119.93263 * 180.23167 * 12 11 10 39 39 H 1.07991 * 119.96274 * 179.72227 * 13 12 11 40 40 H 0.97002 * 119.99858 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.07762 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 8 2.0117 -0.6817 1.1657 5 6 2.7885 -1.8089 0.7126 6 6 2.2651 -2.0391 -0.7272 7 1 1.3457 -2.6244 -0.7193 8 6 3.3310 -2.7091 -1.5968 9 7 2.8027 -2.9103 -2.9483 10 6 3.5987 -3.5098 -3.9272 11 6 4.8941 -3.9104 -3.6213 12 6 5.6801 -4.5077 -4.5877 13 6 5.1854 -4.6992 -5.8635 14 6 3.8934 -4.2963 -6.1771 15 8 3.4081 -4.4853 -7.4307 16 6 2.1117 -4.1784 -7.6380 17 1 1.5312 -3.7247 -6.8483 18 6 1.5237 -4.4451 -8.8650 19 7 2.2307 -4.9981 -9.8268 20 14 -0.2722 -4.0193 -9.1524 21 1 -0.3741 -2.6364 -9.6839 22 1 -0.8558 -4.9704 -10.1322 23 1 -1.0145 -4.1125 -7.8695 24 6 3.0990 -3.7013 -5.2073 25 8 2.0129 -0.6835 -1.1688 26 1 -0.3633 0.5314 0.8797 27 1 -0.3633 0.4961 -0.8999 28 1 -0.3633 -1.0275 0.0204 29 1 3.1308 1.4415 0.0203 30 1 1.6946 1.9503 -0.9000 31 1 1.6614 1.9620 0.8796 32 1 3.8508 -1.5653 0.7019 33 1 2.5988 -2.6828 1.3358 34 1 4.2146 -2.0726 -1.6434 35 1 3.5998 -3.6728 -1.1640 36 1 1.9000 -2.6279 -3.1633 37 1 5.2851 -3.7584 -2.6261 38 1 6.6850 -4.8216 -4.3468 39 1 5.8039 -5.1623 -6.6180 40 1 1.8195 -5.1844 -10.6854 41 1 2.0942 -3.3876 -5.4486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715127055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:58 Heat of formation + Delta-G solvation = -88.968991 kcal Electronic energy + Delta-G solvation = -23105.270320 eV Core-core repulsion = 19565.111801 eV Total energy + Delta-G solvation = -3540.158519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.94278 -39.01485 -37.11416 -35.53250 -34.73325 -33.13270 -32.14915 -30.39795 -28.85222 -27.93978 -27.72367 -25.32403 -25.11403 -22.44051 -21.59603 -21.34568 -20.48874 -17.96798 -17.75194 -17.35023 -16.63440 -15.97102 -15.26479 -15.23593 -14.88760 -14.76777 -14.19992 -14.09001 -13.97041 -13.69257 -13.44631 -13.16747 -12.91476 -12.76208 -12.67298 -12.49554 -12.38765 -12.28582 -11.99420 -11.61425 -11.46207 -11.38652 -10.94080 -10.75953 -10.61133 -10.44508 -10.36909 -9.95984 -9.42568 -9.35165 -8.73980 -7.33180 -6.77413 -6.38867 -3.98040 2.39932 2.58389 2.99907 3.16027 3.16525 3.21087 3.53104 3.64945 4.01584 4.35658 4.43348 4.49393 4.64535 4.68800 4.73404 4.93742 5.16090 5.18927 5.21438 5.26533 5.34489 5.38829 5.40082 5.52328 5.56234 5.70500 5.74858 5.79423 5.86994 5.98946 6.29337 6.37603 6.63291 6.66825 6.81133 7.04749 7.17660 7.40218 7.50656 7.67662 8.01656 8.07440 8.19911 9.07362 9.79917 10.79541 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003531 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.451566 B = 7927.747136 C = 9313.640547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.248 3.752 3 C -0.154 4.154 4 O -0.380 6.380 5 C 0.031 3.969 6 C 0.035 3.965 7 H 0.090 0.910 8 C 0.143 3.857 9 N -0.750 5.750 10 C 0.249 3.751 11 C -0.281 4.281 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.190 3.810 15 O -0.178 6.178 16 C -0.389 4.389 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.300 4.300 25 O -0.360 6.360 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.398 0.602 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.269 0.731 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 7.749 20.758 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.171 3.829 3 C -0.211 4.211 4 O -0.301 6.301 5 C -0.046 4.046 6 C -0.022 4.022 7 H 0.108 0.892 8 C 0.018 3.982 9 N -0.383 5.383 10 C 0.148 3.852 11 C -0.303 4.303 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.081 6.081 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.193 1.193 24 C -0.324 4.324 25 O -0.280 6.280 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.232 0.768 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.052 7.758 20.460 21.906 hybrid contribution -1.336 0.241 -0.182 1.370 sum -2.388 7.999 20.278 21.928 Atomic orbital electron populations 1.22380 0.93773 1.03347 1.03372 1.23405 0.93016 0.91565 0.74887 1.22066 1.02533 0.93328 1.03191 1.88886 1.69568 1.41950 1.29703 1.24120 0.96805 0.89789 0.93936 1.24217 0.99418 0.85052 0.93560 0.89214 1.21129 0.95009 0.99001 0.83096 1.44349 1.16794 1.68793 1.08375 1.17440 0.89935 0.90250 0.87557 1.20052 0.94739 1.15660 0.99896 1.20367 0.97690 0.95683 0.92136 1.20045 0.95577 1.12575 0.97455 1.19067 0.92133 0.90436 0.84847 1.83985 1.27579 1.74008 1.22562 1.21302 0.84017 1.41364 0.99847 0.89191 1.25264 1.00032 0.96522 0.94723 1.70044 1.36494 1.39660 1.03819 0.85739 0.80701 0.78468 0.78654 1.19947 1.20298 1.19319 1.20501 1.02865 1.16255 0.92808 1.89371 1.85851 1.21302 1.31525 0.90809 0.90411 0.91841 0.91414 0.90538 0.90603 0.90146 0.87936 0.91546 0.90837 0.76792 0.87944 0.87179 0.86890 0.92130 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.19 37.16 0.34 -1.16 16 2 C 0.25 2.54 1.47 -26.73 -0.04 2.50 16 3 C -0.15 -1.36 9.24 37.15 0.34 -1.02 16 4 O -0.38 -3.98 10.87 -59.04 -0.64 -4.63 16 5 C 0.03 0.26 7.54 38.17 0.29 0.55 16 6 C 0.04 0.35 3.53 -25.71 -0.09 0.26 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.14 1.64 4.68 -4.04 -0.02 1.63 16 9 N -0.75 -11.40 5.73 -58.64 -0.34 -11.74 16 10 C 0.25 4.73 6.65 -83.81 -0.56 4.17 16 11 C -0.28 -5.00 9.31 -39.33 -0.37 -5.37 16 12 C -0.04 -0.74 10.03 -39.64 -0.40 -1.13 16 13 C -0.24 -5.19 9.99 -39.35 -0.39 -5.58 16 14 C 0.19 4.75 6.65 -39.13 -0.26 4.49 16 15 O -0.18 -5.22 9.76 0.05 0.00 -5.22 16 16 C -0.39 -11.11 9.49 30.88 0.29 -10.82 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.79 13.67 55.48 0.76 -25.03 16 20 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.30 -6.76 9.01 -39.20 -0.35 -7.12 16 25 O -0.36 -4.34 10.73 -59.04 -0.63 -4.97 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.79 7.94 -51.93 -0.41 0.38 16 35 H 0.07 0.75 7.96 -51.92 -0.41 0.33 16 36 H 0.40 5.90 8.48 -40.82 -0.35 5.55 16 37 H 0.10 1.53 6.73 -52.49 -0.35 1.18 16 38 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.12 2.82 5.64 -52.49 -0.30 2.52 16 LS Contribution 343.42 15.07 5.18 5.18 Total: -1.00 -32.56 343.42 -7.88 -40.44 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.87 Total: 7.73 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.31 Total: -17.63 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.42 Total: -36.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.27 Total: -14.81 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.56 -7.88 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715127055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.530 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds