Wall clock time and date at job start Tue Mar 31 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.51001 * 2 1 4 4 O 1.43372 * 109.63198 * 120.31834 * 2 1 3 5 5 C 1.44197 * 107.28928 * 119.20724 * 4 2 1 6 6 C 1.54919 * 103.07353 * 338.56261 * 5 4 2 7 7 H 1.08994 * 110.98209 * 277.44928 * 6 5 4 8 8 C 1.53010 * 110.97406 * 153.66642 * 6 5 4 9 9 N 1.46498 * 109.46839 * 180.02562 * 8 6 5 10 10 C 1.39677 * 119.99750 * 180.02562 * 9 8 6 11 11 C 1.39006 * 120.03908 * 359.71972 * 10 9 8 12 12 C 1.38146 * 120.06153 * 179.76879 * 11 10 9 13 13 C 1.38171 * 120.14272 * 0.51355 * 12 11 10 14 14 C 1.38917 * 120.07916 * 359.74033 * 13 12 11 15 15 O 1.35747 * 120.03689 * 180.02562 * 14 13 12 16 16 C 1.34832 * 117.00455 * 174.43651 * 15 14 13 17 17 H 1.07994 * 119.99979 * 5.05891 * 16 15 14 18 18 C 1.38648 * 120.00014 * 185.05367 * 16 15 14 19 19 N 1.31560 * 120.00017 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47243 * 90.00087 * 20 18 16 22 22 H 1.48502 * 109.47018 * 210.00324 * 20 18 16 23 23 H 1.48508 * 109.46958 * 330.00096 * 20 18 16 24 24 C 1.38744 * 120.03676 * 179.97438 * 10 9 8 25 25 O 1.43753 * 109.62840 * 239.68091 * 2 1 3 26 26 H 1.09002 * 109.46846 * 301.13541 * 1 2 3 27 27 H 1.08992 * 109.47172 * 61.13242 * 1 2 3 28 28 H 1.09000 * 109.46937 * 181.13909 * 1 2 3 29 29 H 1.09001 * 109.47559 * 178.86559 * 3 2 1 30 30 H 1.09004 * 109.46997 * 298.86899 * 3 2 1 31 31 H 1.09005 * 109.47002 * 58.86116 * 3 2 1 32 32 H 1.08993 * 110.69443 * 96.95757 * 5 4 2 33 33 H 1.08996 * 110.69334 * 220.16763 * 5 4 2 34 34 H 1.08999 * 109.46924 * 300.00201 * 8 6 5 35 35 H 1.09009 * 109.46536 * 60.00056 * 8 6 5 36 36 H 0.97000 * 120.00123 * 359.97438 * 9 8 6 37 37 H 1.08002 * 119.96751 * 0.02562 * 11 10 9 38 38 H 1.07997 * 119.93263 * 180.23167 * 12 11 10 39 39 H 1.07991 * 119.96274 * 179.72227 * 13 12 11 40 40 H 0.97002 * 119.99858 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.07762 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 8 2.0117 -0.6817 1.1657 5 6 2.7885 -1.8089 0.7126 6 6 2.2651 -2.0391 -0.7272 7 1 1.3457 -2.6244 -0.7193 8 6 3.3310 -2.7091 -1.5968 9 7 2.8027 -2.9103 -2.9483 10 6 3.5987 -3.5098 -3.9272 11 6 4.8941 -3.9104 -3.6213 12 6 5.6801 -4.5077 -4.5877 13 6 5.1854 -4.6992 -5.8635 14 6 3.8934 -4.2963 -6.1771 15 8 3.4081 -4.4853 -7.4307 16 6 2.1117 -4.1784 -7.6380 17 1 1.5312 -3.7247 -6.8483 18 6 1.5237 -4.4451 -8.8650 19 7 2.2307 -4.9981 -9.8268 20 14 -0.2722 -4.0193 -9.1524 21 1 -0.3741 -2.6364 -9.6839 22 1 -0.8558 -4.9704 -10.1322 23 1 -1.0145 -4.1125 -7.8695 24 6 3.0990 -3.7013 -5.2073 25 8 2.0129 -0.6835 -1.1688 26 1 -0.3633 0.5314 0.8797 27 1 -0.3633 0.4961 -0.8999 28 1 -0.3633 -1.0275 0.0204 29 1 3.1308 1.4415 0.0203 30 1 1.6946 1.9503 -0.9000 31 1 1.6614 1.9620 0.8796 32 1 3.8508 -1.5653 0.7019 33 1 2.5988 -2.6828 1.3358 34 1 4.2146 -2.0726 -1.6434 35 1 3.5998 -3.6728 -1.1640 36 1 1.9000 -2.6279 -3.1633 37 1 5.2851 -3.7584 -2.6261 38 1 6.6850 -4.8216 -4.3468 39 1 5.8039 -5.1623 -6.6180 40 1 1.8195 -5.1844 -10.6854 41 1 2.0942 -3.3876 -5.4486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715127055.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:58 Heat of formation + Delta-G solvation = -111.249731 kcal Electronic energy + Delta-G solvation = -23106.236485 eV Core-core repulsion = 19565.111801 eV Total energy + Delta-G solvation = -3541.124684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70903 -40.73087 -38.74826 -36.63191 -35.76685 -34.29907 -33.92813 -31.55375 -30.39770 -29.25463 -28.40856 -27.25758 -26.16726 -23.66522 -22.88774 -22.18516 -22.01209 -19.76341 -19.06700 -18.51647 -17.63649 -17.08257 -16.74828 -16.43721 -16.07471 -15.97110 -15.73500 -15.51081 -15.35966 -14.82423 -14.68390 -14.45114 -14.16276 -13.99172 -13.61338 -13.50157 -13.43833 -13.17586 -13.09315 -12.94417 -12.70105 -12.55521 -12.50110 -12.21887 -12.17691 -12.04850 -11.29236 -11.19816 -10.97936 -10.68824 -10.61908 -9.10177 -8.45507 -8.25245 -6.13859 0.76788 0.92094 1.33692 1.44107 1.51384 2.18298 2.24064 2.46234 2.88451 2.89780 3.27242 3.49674 3.59773 3.70286 3.80118 3.92976 3.95604 4.20501 4.27938 4.41165 4.45820 4.54593 4.59739 4.62516 4.63029 4.73582 4.74024 4.76234 4.83956 4.98595 5.05352 5.12071 5.13679 5.16306 5.19600 5.45295 5.75619 5.80897 6.02869 6.08238 6.11485 6.57554 6.79021 6.99826 7.83231 8.78192 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003531 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.451566 B = 7927.747136 C = 9313.640547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.240 3.760 3 C -0.154 4.154 4 O -0.392 6.392 5 C 0.031 3.969 6 C 0.036 3.964 7 H 0.095 0.905 8 C 0.139 3.861 9 N -0.744 5.744 10 C 0.255 3.745 11 C -0.263 4.263 12 C -0.025 4.025 13 C -0.262 4.262 14 C 0.152 3.848 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.318 4.318 25 O -0.384 6.384 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.398 0.602 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.107 0.893 40 H 0.272 0.728 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 8.464 24.293 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.164 3.836 3 C -0.211 4.211 4 O -0.313 6.313 5 C -0.045 4.045 6 C -0.021 4.021 7 H 0.113 0.887 8 C 0.015 3.985 9 N -0.374 5.374 10 C 0.151 3.849 11 C -0.286 4.286 12 C -0.044 4.044 13 C -0.283 4.283 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.115 0.885 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.178 1.178 24 C -0.342 4.342 25 O -0.306 6.306 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.149 8.498 24.085 25.566 hybrid contribution -1.124 0.075 -0.945 1.471 sum -2.273 8.573 23.140 24.781 Atomic orbital electron populations 1.22375 0.92966 1.03411 1.03960 1.23605 0.93720 0.91877 0.74409 1.22087 1.02196 0.92913 1.03900 1.88873 1.69997 1.42594 1.29874 1.24279 0.97047 0.90139 0.93034 1.24243 0.99318 0.84364 0.94184 0.88728 1.21399 0.95462 1.00502 0.81110 1.44520 1.16491 1.67204 1.09191 1.17536 0.90872 0.89518 0.86933 1.20576 0.93605 1.12869 1.01511 1.20847 0.99479 0.93751 0.90275 1.20288 0.94758 1.13868 0.99346 1.19646 0.93747 0.92021 0.84471 1.83943 1.28122 1.76635 1.25182 1.21777 0.84496 1.41851 1.00635 0.88501 1.26570 1.05324 0.96149 0.93999 1.70190 1.39032 1.42196 1.04615 0.84606 0.74022 0.78574 0.79096 1.18850 1.19386 1.17834 1.20512 1.02305 1.17060 0.94280 1.89352 1.86166 1.22311 1.32761 0.89600 0.90437 0.92064 0.91953 0.90527 0.89208 0.89219 0.85472 0.91231 0.88360 0.76744 0.83596 0.82795 0.87523 0.91870 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.19 71.98 0.66 -2.00 16 2 C 0.24 4.43 1.47 30.59 0.04 4.47 16 3 C -0.15 -2.45 9.24 71.98 0.66 -1.79 16 4 O -0.39 -7.15 10.87 -126.22 -1.37 -8.52 16 5 C 0.03 0.42 7.54 72.64 0.55 0.97 16 6 C 0.04 0.62 3.53 31.25 0.11 0.73 16 7 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 8 C 0.14 2.65 4.68 86.38 0.40 3.05 16 9 N -0.74 -20.73 5.73 -339.45 -1.95 -22.67 16 10 C 0.26 9.19 6.65 38.20 0.25 9.45 16 11 C -0.26 -8.33 9.31 22.43 0.21 -8.12 16 12 C -0.03 -0.85 10.03 22.23 0.22 -0.63 16 13 C -0.26 -11.67 9.99 22.42 0.22 -11.45 16 14 C 0.15 7.96 6.65 22.56 0.15 8.11 16 15 O -0.23 -14.56 9.76 -22.73 -0.22 -14.78 16 16 C -0.41 -24.84 9.49 67.92 0.64 -24.19 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 19 N -0.92 -57.93 13.67 21.61 0.30 -57.63 16 20 Si 1.02 44.03 29.55 68.60 2.03 46.06 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 24 C -0.32 -14.58 9.01 22.52 0.20 -14.38 16 25 O -0.38 -8.48 10.73 -126.22 -1.35 -9.83 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.09 1.03 8.03 -2.39 -0.02 1.01 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.35 7.94 -2.39 -0.02 1.33 16 35 H 0.10 1.47 7.96 -2.38 -0.02 1.45 16 36 H 0.40 11.20 8.48 -92.71 -0.79 10.41 16 37 H 0.15 3.42 6.73 -2.91 -0.02 3.40 16 38 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.11 4.75 8.06 -2.92 -0.02 4.72 16 40 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 41 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 Total: -1.00 -75.87 343.42 2.49 -73.38 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.25 Total: 30.68 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 4.81 Total: -36.67 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.65 Total: -80.31 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -2.95 Total: -33.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -75.87 2.49 -73.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715127055.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.869 kcal (2) G-P(sol) polarization free energy of solvation -75.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds