Wall clock time and date at job start Tue Mar 31 2020 06:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.33631 * 125.80869 * 2 1 4 4 C 1.34211 * 110.92581 * 180.15546 * 3 2 1 5 5 C 1.50703 * 125.42664 * 179.87246 * 4 3 2 6 6 N 1.46498 * 109.47250 * 269.69197 * 5 4 3 7 7 C 1.36938 * 120.00476 * 269.99956 * 6 5 4 8 8 H 1.07996 * 119.99933 * 141.68454 * 7 6 5 9 9 C 1.38809 * 120.00094 * 321.69171 * 7 6 5 10 10 N 1.31625 * 119.99493 * 339.37200 * 9 7 6 11 11 Si 1.86797 * 120.00135 * 159.37563 * 9 7 6 12 12 H 1.48492 * 109.47608 * 59.99683 * 11 9 7 13 13 H 1.48506 * 109.46921 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47251 * 299.99218 * 11 9 7 15 15 C 1.46496 * 119.99830 * 90.00194 * 6 5 4 16 16 C 1.54967 * 110.92512 * 130.73197 * 15 6 5 17 17 C 1.54272 * 104.15892 * 156.29885 * 16 15 6 18 18 C 1.53873 * 106.63934 * 336.44331 * 17 16 15 19 19 C 1.54266 * 106.60103 * 359.97438 * 18 17 16 20 20 C 1.34158 * 109.14522 * 359.61096 * 4 3 2 21 21 C 1.36496 * 125.81034 * 179.72734 * 2 1 3 22 22 C 1.47229 * 127.20024 * 359.97438 * 21 2 1 23 23 O 1.21541 * 120.00201 * 359.97438 * 22 21 2 24 24 O 1.34774 * 120.00201 * 179.97438 * 22 21 2 25 25 H 1.09006 * 109.47472 * 270.26983 * 1 2 3 26 26 H 1.09002 * 109.47557 * 30.27016 * 1 2 3 27 27 H 1.09003 * 109.47505 * 150.26610 * 1 2 3 28 28 H 1.09000 * 109.46962 * 149.69738 * 5 4 3 29 29 H 1.08995 * 109.47062 * 29.69816 * 5 4 3 30 30 H 0.96999 * 119.99285 * 180.02562 * 10 9 7 31 31 H 1.09010 * 110.67560 * 7.42699 * 15 6 5 32 32 H 1.08998 * 110.47715 * 37.64525 * 16 15 6 33 33 H 1.09002 * 110.52777 * 274.97608 * 16 15 6 34 34 H 1.09001 * 110.02867 * 217.13705 * 17 16 15 35 35 H 1.08996 * 110.03319 * 95.75577 * 17 16 15 36 36 H 1.09003 * 110.02916 * 119.26755 * 18 17 16 37 37 H 1.09003 * 110.03621 * 240.64419 * 18 17 16 38 38 H 1.08996 * 110.48904 * 142.28903 * 19 18 17 39 39 H 1.09003 * 110.48535 * 264.79361 * 19 18 17 40 40 H 1.08004 * 127.02693 * 180.24688 * 20 4 3 41 41 H 0.96698 * 117.00362 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0837 0.0000 4 6 3.5859 0.7390 -0.0034 5 6 4.7455 1.7015 -0.0072 6 7 5.1222 2.0068 -1.3895 7 6 6.0557 1.2371 -2.0309 8 1 5.9322 0.9984 -3.0769 9 6 7.1604 0.7635 -1.3366 10 7 7.5391 1.3524 -0.2220 11 14 8.1097 -0.7092 -1.9842 12 1 8.6409 -0.4004 -3.3360 13 1 9.2375 -1.0133 -1.0672 14 1 7.2056 -1.8846 -2.0642 15 6 4.5003 3.1358 -2.0858 16 6 5.5728 4.0316 -2.7557 17 6 4.8114 4.7472 -3.8907 18 6 3.5977 3.8650 -4.2316 19 6 3.6634 2.6430 -3.2924 20 6 3.6856 -0.5989 0.0029 21 6 2.3056 -1.1069 0.0053 22 6 1.8754 -2.5149 0.0125 23 8 0.6912 -2.7886 0.0148 24 8 2.7947 -3.5005 0.0166 25 1 -0.3634 0.0048 1.0277 26 1 -0.3634 0.8875 -0.5180 27 1 -0.3634 -0.8924 -0.5097 28 1 5.5932 1.2510 0.5093 29 1 4.4564 2.6207 0.5022 30 1 8.3114 1.0217 0.2629 31 1 3.8844 3.7185 -1.4006 32 1 6.3791 3.4215 -3.1628 33 1 5.9647 4.7570 -2.0427 34 1 5.4548 4.8508 -4.7645 35 1 4.4771 5.7288 -3.5550 36 1 2.6742 4.4183 -4.0606 37 1 3.6515 3.5412 -5.2710 38 1 2.6627 2.3551 -2.9703 39 1 4.1588 1.8076 -3.7874 40 1 4.5938 -1.1833 0.0059 41 1 2.4642 -4.4092 0.0217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738980238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:59 Heat of formation + Delta-G solvation = -89.502327 kcal Electronic energy + Delta-G solvation = -24313.388351 eV Core-core repulsion = 20773.206705 eV Total energy + Delta-G solvation = -3540.181646 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.52277 -40.88910 -39.27913 -37.12689 -36.36525 -34.03872 -33.54040 -32.52411 -29.70768 -29.34746 -28.03343 -26.84027 -25.09604 -23.83926 -22.55921 -21.15526 -20.88117 -20.43968 -19.12711 -18.51611 -17.59868 -17.37087 -17.11394 -16.52414 -16.46357 -16.29554 -15.96311 -15.15209 -15.04477 -14.50633 -14.22467 -14.08400 -13.97162 -13.80042 -13.72325 -13.29373 -13.04731 -12.91942 -12.64391 -12.61799 -12.51487 -12.29727 -11.96153 -11.86873 -11.82204 -11.78073 -11.65963 -11.19404 -11.12062 -10.79731 -10.51254 -9.36572 -8.58643 -7.89320 -5.47868 0.13113 1.09547 1.44761 1.49081 1.54081 1.77527 2.03054 2.21916 2.49733 3.23027 3.57570 3.63087 3.80888 4.01187 4.03116 4.24364 4.28860 4.40010 4.54919 4.62360 4.63557 4.67149 4.75147 4.82899 4.90500 4.92857 4.99971 5.08127 5.17422 5.18735 5.24600 5.30142 5.41380 5.45240 5.53037 5.54686 5.62503 5.68380 5.75639 6.20390 6.48054 6.99014 7.12796 7.78593 8.33028 9.10257 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.006529 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.387900 B = 4287.850984 C = 5811.727259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.081 3.919 3 O -0.173 6.173 4 C -0.005 4.005 5 C 0.218 3.782 6 N -0.573 5.573 7 C -0.252 4.252 8 H 0.051 0.949 9 C -0.019 4.019 10 N -0.909 5.909 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.161 3.839 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.183 4.183 21 C -0.265 4.265 22 C 0.568 3.432 23 O -0.539 6.539 24 O -0.508 6.508 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.054 0.946 30 H 0.255 0.745 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.138 0.862 41 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 -0.096 -0.985 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.027 3.973 3 O -0.069 6.069 4 C -0.056 4.056 5 C 0.090 3.910 6 N -0.291 5.291 7 C -0.382 4.382 8 H 0.068 0.932 9 C -0.218 4.218 10 N -0.552 5.552 11 Si 0.770 3.230 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.055 3.945 16 C -0.161 4.161 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.169 4.169 20 C -0.203 4.203 21 C -0.267 4.267 22 C 0.415 3.585 23 O -0.433 6.433 24 O -0.322 6.322 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.156 0.844 41 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -11.264 0.524 -0.889 11.311 hybrid contribution 0.981 -1.901 -0.174 2.146 sum -10.283 -1.377 -1.063 10.429 Atomic orbital electron populations 1.20729 0.81177 1.05695 1.05602 1.23413 0.95266 0.82827 0.95749 1.83789 1.17384 1.34891 1.70873 1.24465 0.82030 0.96750 1.02401 1.19631 0.89169 0.93947 0.88219 1.43929 1.43731 1.30374 1.11069 1.18857 0.98901 1.25244 0.95203 0.93179 1.25649 0.96722 1.01050 0.98333 1.70010 1.26259 1.39789 1.19163 0.85756 0.78149 0.81187 0.77910 1.20377 1.21595 1.20853 1.21671 0.92790 0.87539 0.92508 1.22521 0.98560 0.97716 0.97298 1.22042 0.96681 0.98672 0.97830 1.22017 0.98544 0.95670 0.98798 1.22636 0.98767 0.97947 0.97573 1.22453 0.95954 0.93916 1.07981 1.20295 0.94224 0.91254 1.20938 1.19527 0.82699 0.85277 0.71002 1.90809 1.18460 1.84799 1.49190 1.84617 1.41665 1.20641 1.85269 0.87469 0.88093 0.88166 0.87793 0.92765 0.93524 0.91893 0.93313 0.93515 0.91858 0.90750 0.90647 0.91778 0.93356 0.93939 0.84396 0.70702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.89 71.23 0.70 -1.04 16 2 C 0.08 2.67 7.38 25.28 0.19 2.86 16 3 O -0.17 -6.45 10.52 4.71 0.05 -6.40 16 4 C -0.01 -0.23 6.86 24.76 0.17 -0.06 16 5 C 0.22 9.84 5.81 85.63 0.50 10.33 16 6 N -0.57 -26.82 2.46 -675.03 -1.66 -28.48 16 7 C -0.25 -12.98 7.68 84.03 0.64 -12.34 16 8 H 0.05 2.67 6.97 -2.91 -0.02 2.65 16 9 C -0.02 -1.01 4.97 84.86 0.42 -0.59 16 10 N -0.91 -49.44 11.47 21.65 0.25 -49.19 16 11 Si 0.94 43.21 29.60 68.60 2.03 45.24 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.16 6.44 3.43 46.31 0.16 6.60 16 16 C -0.12 -4.64 6.32 31.70 0.20 -4.44 16 17 C -0.11 -3.31 6.80 31.32 0.21 -3.09 16 18 C -0.11 -3.17 6.80 31.32 0.21 -2.96 16 19 C -0.13 -4.68 6.41 31.67 0.20 -4.48 16 20 C -0.18 -7.63 10.93 23.65 0.26 -7.37 16 21 C -0.26 -9.66 6.32 -19.01 -0.12 -9.78 16 22 C 0.57 18.53 8.33 70.18 0.58 19.12 16 23 O -0.54 -17.68 15.64 19.70 0.31 -17.37 16 24 O -0.51 -14.11 13.34 -56.86 -0.76 -14.87 16 25 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 2.39 6.49 -2.39 -0.02 2.37 16 28 H 0.10 5.26 5.54 -2.39 -0.01 5.25 16 29 H 0.05 2.29 7.90 -2.39 -0.02 2.27 16 30 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.06 2.40 7.84 -2.38 -0.02 2.38 16 32 H 0.05 2.16 6.98 -2.39 -0.02 2.14 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.04 1.74 6.86 -2.39 -0.02 1.72 16 40 H 0.14 6.10 8.06 -2.91 -0.02 6.08 16 41 H 0.43 6.77 9.11 -74.06 -0.67 6.10 16 Total: -1.00 -61.88 341.48 4.93 -56.95 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.38 Total: 21.36 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 4.34 Total: -7.24 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -1.42 Total: -77.67 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.40 Total: -38.64 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -61.88 4.93 -56.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738980238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.548 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds