Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29990 * 127.34094 * 2 1 4 4 O 1.20657 * 112.32840 * 179.97438 * 3 2 1 5 5 C 1.33468 * 113.16801 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.83031 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47148 * 300.02648 * 6 5 4 8 8 C 1.52998 * 109.47300 * 60.03181 * 6 5 4 9 9 C 1.37433 * 106.33299 * 0.24514 * 5 4 3 10 10 C 1.47250 * 128.57722 * 179.73490 * 9 5 4 11 11 O 1.21528 * 120.00258 * 89.99945 * 10 9 5 12 12 O 1.34762 * 120.00202 * 270.00179 * 10 9 5 13 13 C 1.45196 * 117.00457 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47391 * 179.97438 * 13 12 10 15 15 C 1.50695 * 115.55038 * 65.10715 * 14 13 12 16 16 H 1.08006 * 119.99677 * 266.11336 * 15 14 13 17 17 C 1.37874 * 120.00180 * 86.10668 * 15 14 13 18 18 N 1.31516 * 119.99877 * 353.71563 * 17 15 14 19 19 Si 1.86804 * 120.00137 * 173.70734 * 17 15 14 20 20 H 1.48505 * 109.46928 * 60.00364 * 19 17 15 21 21 H 1.48494 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47167 * 300.00659 * 19 17 15 23 23 C 1.53003 * 117.49579 * 279.43694 * 14 13 12 24 24 C 1.53002 * 117.49894 * 210.77802 * 14 13 12 25 25 H 1.09001 * 109.46841 * 89.97915 * 1 2 3 26 26 H 1.09006 * 109.47147 * 209.98105 * 1 2 3 27 27 H 1.08997 * 109.47170 * 329.97958 * 1 2 3 28 28 H 1.09004 * 109.46716 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.46925 * 299.99913 * 7 6 5 30 30 H 1.08999 * 109.46806 * 180.02562 * 7 6 5 31 31 H 1.08988 * 109.47142 * 60.00056 * 7 6 5 32 32 H 1.09004 * 109.46872 * 299.99459 * 8 6 5 33 33 H 1.08994 * 109.47313 * 59.99243 * 8 6 5 34 34 H 1.08997 * 109.47137 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47358 * 300.00082 * 13 12 10 36 36 H 1.09009 * 109.46806 * 59.99859 * 13 12 10 37 37 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 38 38 H 1.08996 * 117.50279 * 0.02562 * 23 14 13 39 39 H 1.09002 * 117.49500 * 145.02067 * 23 14 13 40 40 H 1.09004 * 117.49445 * 214.97893 * 24 14 13 41 41 H 1.08998 * 117.50188 * 359.97372 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0335 0.0000 4 8 3.4609 0.7209 0.0005 5 6 3.6502 -0.6002 0.0015 6 6 4.9724 -1.3234 0.0018 7 6 5.7660 -0.9358 -1.2476 8 6 5.7659 -0.9350 1.2509 9 6 2.3995 -1.1699 -0.0041 10 6 2.0411 -2.5981 -0.0109 11 8 1.8905 -3.1919 1.0388 12 8 1.8801 -3.2469 -1.1810 13 6 1.5275 -4.6537 -1.1118 14 6 1.3881 -5.2149 -2.5283 15 6 2.6541 -5.2392 -3.3453 16 1 2.8856 -4.4175 -4.0070 17 6 3.5170 -6.3102 -3.2481 18 7 3.3000 -7.2503 -2.3543 19 14 4.9939 -6.4261 -4.3859 20 1 5.8676 -5.2421 -4.1850 21 1 5.7575 -7.6627 -4.0814 22 1 4.5305 -6.4655 -5.7962 23 6 0.0752 -4.9488 -3.2675 24 6 0.3873 -6.3523 -2.7422 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5136 27 1 -0.3633 0.8898 0.5141 28 1 4.7980 -2.3994 0.0022 29 1 5.2006 -1.2126 -2.1375 30 1 6.7221 -1.4592 -1.2475 31 1 5.9403 0.1401 -1.2480 32 1 5.9403 0.1410 1.2505 33 1 5.2005 -1.2111 2.1409 34 1 6.7224 -1.4577 1.2509 35 1 2.3078 -5.1981 -0.5801 36 1 0.5812 -4.7655 -0.5823 37 1 3.9069 -8.0039 -2.2862 38 1 -0.6890 -4.3736 -2.7449 39 1 0.1272 -4.7917 -4.3449 40 1 0.6446 -7.1179 -3.4743 41 1 -0.1714 -6.7011 -1.8738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744278744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = -16.342626 kcal Electronic energy + Delta-G solvation = -24086.357209 eV Core-core repulsion = 20549.348006 eV Total energy + Delta-G solvation = -3537.009203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.87791 -39.71714 -36.88345 -36.10591 -35.29919 -34.57745 -32.01452 -31.03951 -28.85615 -27.27574 -27.21682 -25.49453 -24.40467 -22.95638 -21.28181 -20.74477 -19.37614 -19.31783 -17.83523 -17.53871 -16.77966 -16.28900 -15.92544 -15.45434 -14.97475 -14.61917 -14.15518 -13.89170 -13.50842 -13.34235 -13.26656 -13.09489 -12.92051 -12.30687 -12.29127 -12.21849 -11.72623 -11.57913 -11.42961 -11.36766 -11.02132 -10.93242 -10.89424 -10.63492 -10.41878 -10.30064 -9.97346 -9.91576 -9.66076 -9.39994 -8.89616 -8.52088 -8.27918 -6.12423 -4.18011 1.30299 1.88385 2.33892 2.74035 3.25573 3.31242 3.33659 3.35525 4.08624 4.17217 4.34168 4.72623 4.80234 4.92482 5.08973 5.15531 5.17664 5.35323 5.38682 5.41663 5.52661 5.57337 5.61215 5.69084 5.77858 5.88908 5.91650 5.97196 6.09559 6.16381 6.18542 6.25119 6.43176 6.55824 6.67506 6.97519 7.05007 7.28885 7.39890 7.81015 8.19502 8.19715 8.34079 8.83845 9.48109 10.96891 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005580 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.582352 B = 5016.694520 C = 6195.957043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 N -0.358 5.358 4 O 0.099 5.901 5 C 0.039 3.961 6 C -0.020 4.020 7 C -0.149 4.149 8 C -0.148 4.148 9 C -0.224 4.224 10 C 0.541 3.459 11 O -0.503 6.503 12 O -0.324 6.324 13 C 0.114 3.886 14 C 0.036 3.964 15 C -0.491 4.491 16 H 0.063 0.937 17 C 0.070 3.930 18 N -0.881 5.881 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.205 4.205 24 C -0.142 4.142 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.692 11.755 4.666 12.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.101 4.101 3 N -0.066 5.066 4 O 0.038 5.962 5 C -0.025 4.025 6 C -0.039 4.039 7 C -0.206 4.206 8 C -0.205 4.205 9 C -0.230 4.230 10 C 0.382 3.618 11 O -0.392 6.392 12 O -0.238 6.238 13 C 0.041 3.959 14 C 0.036 3.964 15 C -0.529 4.529 16 H 0.081 0.919 17 C -0.133 4.133 18 N -0.517 5.517 19 Si 0.719 3.281 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.242 4.242 24 C -0.180 4.180 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.533 12.658 5.018 13.627 hybrid contribution 0.597 -1.165 -0.445 1.383 sum 1.130 11.493 4.573 12.421 Atomic orbital electron populations 1.20251 0.85039 1.04134 1.04155 1.24671 0.98572 0.86211 1.00639 1.73573 0.89130 1.23195 1.20667 1.84478 1.21347 1.22354 1.68001 1.24641 0.96785 0.83487 0.97539 1.19994 0.86797 0.99108 0.98023 1.21882 1.00332 1.02097 0.96335 1.21882 1.00210 1.02350 0.96093 1.21076 0.93087 0.93053 1.15740 1.19606 0.73887 0.85232 0.83049 1.90842 1.46849 1.67970 1.33547 1.86694 1.78209 1.27861 1.31069 1.23040 0.98565 0.74458 0.99836 1.18769 0.90031 0.97348 0.90270 1.20343 1.03485 1.04943 1.24106 0.91912 1.25002 0.97638 0.95574 0.95101 1.69986 1.37629 1.11178 1.32951 0.86671 0.82562 0.77483 0.81424 1.20056 1.21219 1.20104 1.23021 1.01222 1.00102 0.99899 1.22541 1.02714 0.91263 1.01469 0.89223 0.89779 0.89884 0.87486 0.91265 0.90855 0.91786 0.91676 0.91956 0.90850 0.90347 0.94018 0.92780 0.91517 0.90012 0.89330 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.49 36.01 0.38 -0.55 16 2 C 0.06 0.93 7.59 -79.76 -0.61 0.33 16 3 N -0.36 -5.48 12.01 34.79 0.42 -5.06 16 4 O 0.10 1.44 11.06 18.72 0.21 1.65 16 5 C 0.04 0.58 6.06 -34.60 -0.21 0.37 16 6 C -0.02 -0.25 3.33 -91.77 -0.31 -0.56 16 7 C -0.15 -1.70 9.18 37.16 0.34 -1.36 16 8 C -0.15 -1.52 9.18 37.16 0.34 -1.17 16 9 C -0.22 -3.84 6.37 -102.91 -0.66 -4.49 16 10 C 0.54 10.76 7.44 34.39 0.26 11.01 16 11 O -0.50 -10.89 16.90 -19.29 -0.33 -11.22 16 12 O -0.32 -7.09 10.17 -40.66 -0.41 -7.50 16 13 C 0.11 2.63 5.30 37.16 0.20 2.83 16 14 C 0.04 0.88 1.62 -155.66 -0.25 0.63 16 15 C -0.49 -13.04 8.77 -34.44 -0.30 -13.34 16 16 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 17 C 0.07 1.86 5.38 -17.82 -0.10 1.77 16 18 N -0.88 -24.13 12.88 55.43 0.71 -23.42 16 19 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 24 C -0.14 -3.22 9.37 -26.69 -0.25 -3.47 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.11 1.56 7.71 -51.93 -0.40 1.16 16 29 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.63 8.14 -51.94 -0.42 0.21 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 40 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -29.53 359.82 -6.71 -36.24 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.28 Total: 1.11 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.43 Total: -12.64 kcal Atomic # 7 Polarization: -29.61 SS G_CDS: 1.13 Total: -28.48 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.53 Total: -17.08 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.53 -6.71 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.899 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds