Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29990 * 127.34094 * 2 1 4 4 O 1.20657 * 112.32840 * 179.97438 * 3 2 1 5 5 C 1.33468 * 113.16801 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.83031 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47148 * 300.02648 * 6 5 4 8 8 C 1.52998 * 109.47300 * 60.03181 * 6 5 4 9 9 C 1.37433 * 106.33299 * 0.24514 * 5 4 3 10 10 C 1.47250 * 128.57722 * 179.73490 * 9 5 4 11 11 O 1.21528 * 120.00258 * 89.99945 * 10 9 5 12 12 O 1.34762 * 120.00202 * 270.00179 * 10 9 5 13 13 C 1.45196 * 117.00457 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47391 * 179.97438 * 13 12 10 15 15 C 1.50695 * 115.55038 * 65.10715 * 14 13 12 16 16 H 1.08006 * 119.99677 * 266.11336 * 15 14 13 17 17 C 1.37874 * 120.00180 * 86.10668 * 15 14 13 18 18 N 1.31516 * 119.99877 * 353.71563 * 17 15 14 19 19 Si 1.86804 * 120.00137 * 173.70734 * 17 15 14 20 20 H 1.48505 * 109.46928 * 60.00364 * 19 17 15 21 21 H 1.48494 * 109.47075 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47167 * 300.00659 * 19 17 15 23 23 C 1.53003 * 117.49579 * 279.43694 * 14 13 12 24 24 C 1.53002 * 117.49894 * 210.77802 * 14 13 12 25 25 H 1.09001 * 109.46841 * 89.97915 * 1 2 3 26 26 H 1.09006 * 109.47147 * 209.98105 * 1 2 3 27 27 H 1.08997 * 109.47170 * 329.97958 * 1 2 3 28 28 H 1.09004 * 109.46716 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.46925 * 299.99913 * 7 6 5 30 30 H 1.08999 * 109.46806 * 180.02562 * 7 6 5 31 31 H 1.08988 * 109.47142 * 60.00056 * 7 6 5 32 32 H 1.09004 * 109.46872 * 299.99459 * 8 6 5 33 33 H 1.08994 * 109.47313 * 59.99243 * 8 6 5 34 34 H 1.08997 * 109.47137 * 180.02562 * 8 6 5 35 35 H 1.08996 * 109.47358 * 300.00082 * 13 12 10 36 36 H 1.09009 * 109.46806 * 59.99859 * 13 12 10 37 37 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 38 38 H 1.08996 * 117.50279 * 0.02562 * 23 14 13 39 39 H 1.09002 * 117.49500 * 145.02067 * 23 14 13 40 40 H 1.09004 * 117.49445 * 214.97893 * 24 14 13 41 41 H 1.08998 * 117.50188 * 359.97372 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0335 0.0000 4 8 3.4609 0.7209 0.0005 5 6 3.6502 -0.6002 0.0015 6 6 4.9724 -1.3234 0.0018 7 6 5.7660 -0.9358 -1.2476 8 6 5.7659 -0.9350 1.2509 9 6 2.3995 -1.1699 -0.0041 10 6 2.0411 -2.5981 -0.0109 11 8 1.8905 -3.1919 1.0388 12 8 1.8801 -3.2469 -1.1810 13 6 1.5275 -4.6537 -1.1118 14 6 1.3881 -5.2149 -2.5283 15 6 2.6541 -5.2392 -3.3453 16 1 2.8856 -4.4175 -4.0070 17 6 3.5170 -6.3102 -3.2481 18 7 3.3000 -7.2503 -2.3543 19 14 4.9939 -6.4261 -4.3859 20 1 5.8676 -5.2421 -4.1850 21 1 5.7575 -7.6627 -4.0814 22 1 4.5305 -6.4655 -5.7962 23 6 0.0752 -4.9488 -3.2675 24 6 0.3873 -6.3523 -2.7422 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5136 27 1 -0.3633 0.8898 0.5141 28 1 4.7980 -2.3994 0.0022 29 1 5.2006 -1.2126 -2.1375 30 1 6.7221 -1.4592 -1.2475 31 1 5.9403 0.1401 -1.2480 32 1 5.9403 0.1410 1.2505 33 1 5.2005 -1.2111 2.1409 34 1 6.7224 -1.4577 1.2509 35 1 2.3078 -5.1981 -0.5801 36 1 0.5812 -4.7655 -0.5823 37 1 3.9069 -8.0039 -2.2862 38 1 -0.6890 -4.3736 -2.7449 39 1 0.1272 -4.7917 -4.3449 40 1 0.6446 -7.1179 -3.4743 41 1 -0.1714 -6.7011 -1.8738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744278744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = -30.303157 kcal Electronic energy + Delta-G solvation = -24086.962583 eV Core-core repulsion = 20549.348006 eV Total energy + Delta-G solvation = -3537.614577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.07963 -41.38480 -38.65298 -37.17973 -37.01721 -35.76187 -34.02797 -32.22513 -29.90698 -28.94495 -28.14539 -27.44510 -25.89054 -24.00389 -23.01778 -22.21758 -21.22358 -20.53612 -19.20878 -18.83996 -18.52234 -17.85742 -17.36767 -17.07428 -16.58282 -16.19719 -15.72288 -15.17855 -14.82290 -14.47032 -14.42860 -14.19532 -14.01433 -13.98839 -13.81048 -13.60575 -13.09845 -12.94861 -12.81297 -12.68473 -12.44661 -12.42859 -12.31799 -12.12895 -12.03779 -11.90784 -11.77928 -11.49511 -11.08966 -10.80497 -10.64222 -10.48950 -10.11405 -8.14294 -6.25798 0.06913 0.66503 0.77202 1.39807 1.43102 1.44178 1.51565 1.95133 2.42288 2.95034 3.00093 3.14497 3.37972 3.58680 3.69096 3.88951 3.97830 4.04894 4.09367 4.32571 4.34739 4.40884 4.46729 4.54144 4.62316 4.64245 4.73326 4.77735 4.82767 4.85309 4.96152 5.01180 5.02310 5.17360 5.23021 5.27027 5.32119 5.51014 5.59741 5.73987 6.33967 6.56787 6.78914 6.99885 7.43210 8.94345 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005580 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.582352 B = 5016.694520 C = 6195.957043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 N -0.365 5.365 4 O 0.105 5.895 5 C 0.056 3.944 6 C -0.025 4.025 7 C -0.146 4.146 8 C -0.143 4.143 9 C -0.264 4.264 10 C 0.549 3.451 11 O -0.525 6.525 12 O -0.334 6.334 13 C 0.126 3.874 14 C 0.002 3.998 15 C -0.507 4.507 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.907 5.907 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.180 4.180 24 C -0.142 4.142 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.262 0.738 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 13.284 4.406 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 N -0.074 5.074 4 O 0.046 5.954 5 C -0.007 4.007 6 C -0.044 4.044 7 C -0.203 4.203 8 C -0.200 4.200 9 C -0.269 4.269 10 C 0.392 3.608 11 O -0.416 6.416 12 O -0.249 6.249 13 C 0.053 3.947 14 C 0.002 3.998 15 C -0.545 4.545 16 H 0.071 0.929 17 C -0.173 4.173 18 N -0.545 5.545 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.217 4.217 24 C -0.179 4.179 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.850 14.207 4.753 15.005 hybrid contribution 0.498 -1.600 -0.348 1.712 sum 1.348 12.606 4.405 13.422 Atomic orbital electron populations 1.20437 0.82806 1.05213 1.05312 1.25148 0.99963 0.85145 0.99440 1.73558 0.89253 1.23129 1.21424 1.84478 1.21285 1.21808 1.67816 1.25016 0.96983 0.83582 0.95153 1.20146 0.86496 0.97499 1.00300 1.21889 1.00398 1.03604 0.94397 1.21884 1.00381 1.03688 0.94022 1.21039 0.94821 0.91959 1.19118 1.19910 0.72729 0.86054 0.82070 1.90816 1.47883 1.68826 1.34053 1.86690 1.78609 1.27237 1.32316 1.22704 0.97977 0.74937 0.99071 1.18878 0.90525 0.99432 0.90974 1.20570 1.04822 1.04773 1.24300 0.92905 1.25666 1.00058 0.95291 0.96274 1.70087 1.38607 1.11601 1.34162 0.85775 0.79653 0.77585 0.79704 1.19400 1.20913 1.19626 1.23037 0.99661 0.98927 1.00032 1.22477 1.02439 0.91318 1.01687 0.87906 0.89936 0.87550 0.89918 0.93365 0.89150 0.89820 0.89977 0.92815 0.88928 0.93515 0.92669 0.92877 0.88947 0.89724 0.91100 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.49 71.24 0.75 -1.01 16 2 C 0.07 1.92 7.59 45.17 0.34 2.26 16 3 N -0.37 -10.62 12.01 -44.74 -0.54 -11.15 16 4 O 0.10 2.90 11.06 77.21 0.85 3.76 16 5 C 0.06 1.65 6.06 25.50 0.15 1.81 16 6 C -0.02 -0.62 3.33 -11.54 -0.04 -0.66 16 7 C -0.15 -3.13 9.18 71.98 0.66 -2.46 16 8 C -0.14 -2.67 9.18 71.98 0.66 -2.01 16 9 C -0.26 -9.00 6.37 -18.76 -0.12 -9.11 16 10 C 0.55 22.19 7.44 70.19 0.52 22.71 16 11 O -0.53 -23.25 16.90 19.74 0.33 -22.91 16 12 O -0.33 -14.83 10.17 -56.73 -0.58 -15.40 16 13 C 0.13 5.94 5.30 71.98 0.38 6.32 16 14 C 0.00 0.11 1.62 -52.93 -0.09 0.03 16 15 C -0.51 -27.23 8.77 25.60 0.22 -27.00 16 16 H 0.05 2.86 7.82 -2.91 -0.02 2.84 16 17 C 0.03 1.49 5.38 84.65 0.46 1.94 16 18 N -0.91 -50.50 12.88 21.45 0.28 -50.22 16 19 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 C -0.18 -7.39 9.96 30.62 0.30 -7.09 16 24 C -0.14 -6.36 9.37 30.62 0.29 -6.07 16 25 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.49 7.71 -2.38 -0.02 2.47 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.06 2.39 8.09 -2.38 -0.02 2.37 16 37 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -63.48 359.82 7.89 -55.58 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 1.02 Total: 16.65 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.50 Total: -20.35 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.26 Total: -61.37 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: 0.61 Total: -34.56 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -63.48 7.89 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744278744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.281 kcal (2) G-P(sol) polarization free energy of solvation -63.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds