Wall clock time and date at job start Tue Mar 31 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53005 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46695 * 305.00073 * 4 3 2 6 6 O 1.42906 * 109.46806 * 64.99712 * 4 3 2 7 7 C 1.52995 * 109.47247 * 184.99678 * 4 3 2 8 8 C 1.50701 * 109.46929 * 174.99964 * 7 4 3 9 9 O 1.21289 * 120.00253 * 0.02562 * 8 7 4 10 10 N 1.34776 * 120.00146 * 180.02562 * 8 7 4 11 11 C 1.39925 * 120.00418 * 185.20942 * 10 8 7 12 12 C 1.38964 * 120.03643 * 213.74942 * 11 10 8 13 13 C 1.38153 * 120.06834 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.13727 * 0.02562 * 13 12 11 15 15 C 1.38908 * 120.06995 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.03111 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00135 * 5.86787 * 16 15 14 18 18 H 1.08003 * 119.99976 * 5.41278 * 17 16 15 19 19 C 1.38655 * 120.00389 * 185.40174 * 17 16 15 20 20 N 1.31557 * 120.00385 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99499 * 0.02562 * 19 17 16 22 22 H 1.48511 * 109.46856 * 89.99660 * 21 19 17 23 23 H 1.48498 * 109.47234 * 209.99334 * 21 19 17 24 24 H 1.48493 * 109.47263 * 329.99768 * 21 19 17 25 25 C 1.38709 * 120.03314 * 33.72475 * 11 10 8 26 26 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47074 * 300.00142 * 1 2 3 28 28 H 1.09001 * 109.47309 * 60.00386 * 1 2 3 29 29 H 1.09002 * 109.47074 * 239.99858 * 2 1 3 30 30 H 1.09001 * 109.47309 * 119.99614 * 2 1 3 31 31 H 1.08994 * 109.47634 * 59.99759 * 3 2 1 32 32 H 1.09002 * 109.47370 * 299.99829 * 3 2 1 33 33 H 0.96701 * 114.00263 * 60.00540 * 6 4 3 34 34 H 1.08999 * 109.46947 * 55.00294 * 7 4 3 35 35 H 1.09001 * 109.47426 * 295.00240 * 7 4 3 36 36 H 0.97012 * 119.99981 * 5.19917 * 10 8 7 37 37 H 1.07999 * 119.96305 * 359.97279 * 12 11 10 38 38 H 1.07990 * 119.93384 * 180.02562 * 13 12 11 39 39 H 1.07994 * 119.96264 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99900 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07013 * 359.74735 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 8 4.0468 0.8729 -1.2202 7 6 4.0799 2.8796 0.1263 8 6 5.5817 2.8706 0.2504 9 8 6.1849 1.8184 0.2390 10 7 6.2546 4.0318 0.3741 11 6 7.6539 4.0324 0.3798 12 6 8.3459 4.9584 1.1510 13 6 9.7275 4.9593 1.1574 14 6 10.4253 4.0405 0.3972 15 6 9.7394 3.1131 -0.3767 16 8 10.4258 2.2104 -1.1229 17 6 11.7658 2.1871 -0.9757 18 1 12.2375 2.8050 -0.2259 19 6 12.5384 1.3699 -1.7868 20 7 13.8458 1.3468 -1.6428 21 14 11.7225 0.3016 -3.0840 22 1 11.6271 1.0571 -4.3590 23 1 12.5316 -0.9256 -3.2951 24 1 10.3602 -0.0759 -2.6292 25 6 8.3516 3.1085 -0.3841 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.7618 1.3472 -2.0132 34 1 3.6449 3.3433 1.0116 35 1 3.7918 3.4461 -0.7593 36 1 5.7689 4.8672 0.4592 37 1 7.8032 5.6780 1.7459 38 1 10.2631 5.6795 1.7579 39 1 11.5053 4.0440 0.4040 40 1 14.3862 0.7754 -2.2104 41 1 7.8160 2.3850 -0.9809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750221016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:28 Heat of formation + Delta-G solvation = -100.326774 kcal Electronic energy + Delta-G solvation = -22867.035530 eV Core-core repulsion = 19326.384501 eV Total energy + Delta-G solvation = -3540.651029 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32911 -38.92510 -37.87284 -36.51692 -34.36228 -34.09127 -32.33177 -31.61523 -29.64084 -28.77169 -27.26250 -25.17122 -23.28962 -22.07549 -21.46382 -21.16553 -20.11772 -18.07912 -17.68354 -16.96403 -16.64192 -16.17257 -15.49141 -15.30655 -15.15737 -14.65426 -14.30672 -14.16966 -13.84839 -13.74656 -13.56285 -13.49327 -12.83931 -12.44030 -12.30120 -12.22743 -12.09807 -11.92453 -11.58994 -11.54464 -11.14574 -10.99144 -10.95712 -10.93452 -10.78908 -10.19535 -10.13482 -9.81469 -9.63777 -9.26303 -8.81974 -7.76271 -7.28615 -6.37005 -4.03199 1.94022 2.25499 2.85599 3.14601 3.28960 3.31539 3.50708 4.17470 4.30802 4.38001 4.45527 4.54511 4.70678 4.79099 4.90173 4.92424 5.10117 5.14188 5.16986 5.25414 5.31322 5.45656 5.56292 5.58567 5.73226 5.74379 5.77922 6.00369 6.04746 6.10310 6.15206 6.29429 6.54685 6.82686 6.95583 7.14967 7.35537 7.57806 7.61964 7.64395 7.84428 8.07499 8.34467 8.98712 9.62160 10.70468 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003557 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.376776 B = 7869.242967 C = 9366.033127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.151 4.151 4 C 0.121 3.879 5 H 0.106 0.894 6 O -0.542 6.542 7 C -0.174 4.174 8 C 0.503 3.497 9 O -0.494 6.494 10 N -0.675 5.675 11 C 0.176 3.824 12 C -0.230 4.230 13 C -0.060 4.060 14 C -0.233 4.233 15 C 0.174 3.826 16 O -0.213 6.213 17 C -0.388 4.388 18 H 0.107 0.893 19 C 0.064 3.936 20 N -0.880 5.880 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.257 1.257 25 C -0.188 4.188 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.367 0.633 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.404 0.596 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.279 0.721 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.556 5.662 3.538 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.189 4.189 4 C 0.061 3.939 5 H 0.123 0.877 6 O -0.346 6.346 7 C -0.214 4.214 8 C 0.289 3.711 9 O -0.366 6.366 10 N -0.321 5.321 11 C 0.083 3.917 12 C -0.251 4.251 13 C -0.079 4.079 14 C -0.253 4.253 15 C 0.121 3.879 16 O -0.118 6.118 17 C -0.463 4.463 18 H 0.124 0.876 19 C -0.139 4.139 20 N -0.518 5.518 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.181 1.181 25 C -0.209 4.209 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.213 0.787 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.089 0.911 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.750 4.146 3.680 24.388 hybrid contribution -0.591 0.647 -0.721 1.135 sum -24.341 4.793 2.959 24.984 Atomic orbital electron populations 1.21788 0.96032 1.01638 1.01532 1.21461 0.95338 0.96263 1.02973 1.22353 0.95772 0.98064 1.02679 1.21711 0.91549 0.91417 0.89202 0.87663 1.86780 1.76788 1.56190 1.14826 1.22496 0.93035 1.00971 1.04925 1.20626 0.89808 0.83783 0.76854 1.90839 1.69590 1.30431 1.45725 1.43488 1.05256 1.09718 1.73590 1.17152 0.81239 0.97217 0.96079 1.20332 0.94399 1.04460 1.05869 1.20561 0.93065 0.97145 0.97110 1.21299 1.01241 0.99246 1.03481 1.18870 0.90628 0.88044 0.90391 1.83601 1.21611 1.49632 1.56938 1.20776 0.77428 1.27583 1.20524 0.87586 1.24456 0.94600 0.97161 0.97703 1.69646 1.03697 1.38851 1.39575 0.86213 0.80454 0.79506 0.81039 1.19911 1.20734 1.18060 1.20033 0.91419 1.04045 1.05422 0.92749 0.92929 0.92890 0.91138 0.91895 0.91049 0.91579 0.78724 0.88083 0.88498 0.76090 0.87257 0.86775 0.84827 0.91078 0.85252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.93 5.83 -26.73 -0.16 -1.09 16 3 C -0.15 -1.01 4.89 -26.73 -0.13 -1.14 16 4 C 0.12 1.17 2.51 -26.73 -0.07 1.10 16 5 H 0.11 1.24 7.96 -51.93 -0.41 0.83 16 6 O -0.54 -6.55 12.11 -49.66 -0.60 -7.15 16 7 C -0.17 -1.45 5.38 -27.89 -0.15 -1.60 16 8 C 0.50 7.08 7.45 -10.99 -0.08 7.00 16 9 O -0.49 -9.70 13.13 -8.87 -0.12 -9.81 16 10 N -0.67 -9.02 5.34 -9.88 -0.05 -9.07 16 11 C 0.18 3.18 6.27 -83.72 -0.52 2.65 16 12 C -0.23 -3.83 9.96 -39.34 -0.39 -4.22 16 13 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 14 C -0.23 -5.18 9.13 -39.36 -0.36 -5.54 16 15 C 0.17 4.27 6.64 -39.13 -0.26 4.01 16 16 O -0.21 -5.97 8.58 0.05 0.00 -5.97 16 17 C -0.39 -11.31 9.90 30.89 0.31 -11.00 16 18 H 0.11 3.13 5.53 -52.48 -0.29 2.84 16 19 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 20 N -0.88 -26.00 13.96 55.48 0.77 -25.22 16 21 Si 0.90 22.66 28.62 -169.99 -4.86 17.80 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 25 C -0.19 -4.17 8.60 -39.21 -0.34 -4.51 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.37 2.96 9.05 45.56 0.41 3.37 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.40 3.61 8.82 -40.81 -0.36 3.25 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 3.08 5.71 -52.49 -0.30 2.78 16 40 H 0.28 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.13 3.04 6.43 -52.48 -0.34 2.71 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -35.21 345.94 -6.98 -42.19 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.06 Total: 6.67 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -2.28 Total: -14.64 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.72 Total: -34.30 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.72 Total: -22.93 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.86 Total: 17.80 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.21 -6.98 -42.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750221016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.138 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds