Wall clock time and date at job start Tue Mar 31 2020 07:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53005 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46695 * 305.00073 * 4 3 2 6 6 O 1.42906 * 109.46806 * 64.99712 * 4 3 2 7 7 C 1.52995 * 109.47247 * 184.99678 * 4 3 2 8 8 C 1.50701 * 109.46929 * 174.99964 * 7 4 3 9 9 O 1.21289 * 120.00253 * 0.02562 * 8 7 4 10 10 N 1.34776 * 120.00146 * 180.02562 * 8 7 4 11 11 C 1.39925 * 120.00418 * 185.20942 * 10 8 7 12 12 C 1.38964 * 120.03643 * 213.74942 * 11 10 8 13 13 C 1.38153 * 120.06834 * 179.97438 * 12 11 10 14 14 C 1.38173 * 120.13727 * 0.02562 * 13 12 11 15 15 C 1.38908 * 120.06995 * 0.02562 * 14 13 12 16 16 O 1.35752 * 120.03111 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00135 * 5.86787 * 16 15 14 18 18 H 1.08003 * 119.99976 * 5.41278 * 17 16 15 19 19 C 1.38655 * 120.00389 * 185.40174 * 17 16 15 20 20 N 1.31557 * 120.00385 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99499 * 0.02562 * 19 17 16 22 22 H 1.48511 * 109.46856 * 89.99660 * 21 19 17 23 23 H 1.48498 * 109.47234 * 209.99334 * 21 19 17 24 24 H 1.48493 * 109.47263 * 329.99768 * 21 19 17 25 25 C 1.38709 * 120.03314 * 33.72475 * 11 10 8 26 26 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47074 * 300.00142 * 1 2 3 28 28 H 1.09001 * 109.47309 * 60.00386 * 1 2 3 29 29 H 1.09002 * 109.47074 * 239.99858 * 2 1 3 30 30 H 1.09001 * 109.47309 * 119.99614 * 2 1 3 31 31 H 1.08994 * 109.47634 * 59.99759 * 3 2 1 32 32 H 1.09002 * 109.47370 * 299.99829 * 3 2 1 33 33 H 0.96701 * 114.00263 * 60.00540 * 6 4 3 34 34 H 1.08999 * 109.46947 * 55.00294 * 7 4 3 35 35 H 1.09001 * 109.47426 * 295.00240 * 7 4 3 36 36 H 0.97012 * 119.99981 * 5.19917 * 10 8 7 37 37 H 1.07999 * 119.96305 * 359.97279 * 12 11 10 38 38 H 1.07990 * 119.93384 * 180.02562 * 13 12 11 39 39 H 1.07994 * 119.96264 * 179.97438 * 14 13 12 40 40 H 0.96995 * 119.99900 * 180.02562 * 20 19 17 41 41 H 1.08005 * 120.07013 * 359.74735 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8427 6 8 4.0468 0.8729 -1.2202 7 6 4.0799 2.8796 0.1263 8 6 5.5817 2.8706 0.2504 9 8 6.1849 1.8184 0.2390 10 7 6.2546 4.0318 0.3741 11 6 7.6539 4.0324 0.3798 12 6 8.3459 4.9584 1.1510 13 6 9.7275 4.9593 1.1574 14 6 10.4253 4.0405 0.3972 15 6 9.7394 3.1131 -0.3767 16 8 10.4258 2.2104 -1.1229 17 6 11.7658 2.1871 -0.9757 18 1 12.2375 2.8050 -0.2259 19 6 12.5384 1.3699 -1.7868 20 7 13.8458 1.3468 -1.6428 21 14 11.7225 0.3016 -3.0840 22 1 11.6271 1.0571 -4.3590 23 1 12.5316 -0.9256 -3.2951 24 1 10.3602 -0.0759 -2.6292 25 6 8.3516 3.1085 -0.3841 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.7618 1.3472 -2.0132 34 1 3.6449 3.3433 1.0116 35 1 3.7918 3.4461 -0.7593 36 1 5.7689 4.8672 0.4592 37 1 7.8032 5.6780 1.7459 38 1 10.2631 5.6795 1.7579 39 1 11.5053 4.0440 0.4040 40 1 14.3862 0.7754 -2.2104 41 1 7.8160 2.3850 -0.9809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750221016.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:28 Heat of formation + Delta-G solvation = -126.598711 kcal Electronic energy + Delta-G solvation = -22868.174767 eV Core-core repulsion = 19326.384501 eV Total energy + Delta-G solvation = -3541.790266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.61778 -40.52824 -38.93216 -38.02066 -35.50796 -34.98817 -34.46035 -32.49323 -31.25699 -30.15516 -28.06209 -27.22517 -24.44003 -23.34023 -22.68134 -22.07910 -21.32981 -19.87651 -19.44544 -18.14991 -17.48498 -17.23870 -16.89678 -16.81246 -16.41251 -16.07856 -15.72678 -15.52951 -15.12744 -14.98998 -14.86240 -14.31635 -14.28005 -14.17276 -14.11160 -13.36350 -12.99701 -12.92710 -12.75091 -12.63721 -12.54318 -12.49384 -12.17193 -12.04934 -11.63889 -11.52284 -11.50046 -11.27972 -10.96208 -10.88439 -10.65949 -9.39496 -8.92440 -8.53420 -6.25208 0.38639 0.62989 1.25822 1.29412 1.48335 1.69592 2.05717 2.25332 2.74737 3.06288 3.10263 3.52202 3.67263 3.76969 4.09085 4.10992 4.20272 4.31632 4.33647 4.37826 4.43044 4.62314 4.66421 4.69628 4.70151 4.75175 4.94366 4.97135 5.03231 5.12288 5.29203 5.34252 5.37654 5.41123 5.45082 5.49567 5.66277 5.76112 5.89821 6.21628 6.53457 6.81536 6.95945 7.27937 7.57990 8.58217 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.003557 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.376776 B = 7869.242967 C = 9366.033127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C -0.137 4.137 4 C 0.116 3.884 5 H 0.073 0.927 6 O -0.577 6.577 7 C -0.157 4.157 8 C 0.497 3.503 9 O -0.557 6.557 10 N -0.658 5.658 11 C 0.185 3.815 12 C -0.197 4.197 13 C -0.053 4.053 14 C -0.251 4.251 15 C 0.133 3.867 16 O -0.250 6.250 17 C -0.398 4.398 18 H 0.086 0.914 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.963 3.037 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.277 1.277 25 C -0.205 4.205 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.381 0.619 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.432 0.568 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.113 0.887 40 H 0.285 0.715 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.426 8.574 4.512 30.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.175 4.175 4 C 0.056 3.944 5 H 0.091 0.909 6 O -0.384 6.384 7 C -0.197 4.197 8 C 0.286 3.714 9 O -0.433 6.433 10 N -0.306 5.306 11 C 0.090 3.910 12 C -0.217 4.217 13 C -0.071 4.071 14 C -0.271 4.271 15 C 0.084 3.916 16 O -0.157 6.157 17 C -0.474 4.474 18 H 0.104 0.896 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.786 3.214 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.202 1.202 25 C -0.227 4.227 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.272 0.728 37 H 0.184 0.816 38 H 0.173 0.827 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -27.688 7.135 4.669 28.972 hybrid contribution 0.362 -0.066 -0.818 0.897 sum -27.327 7.070 3.852 28.488 Atomic orbital electron populations 1.21755 0.94678 1.01784 1.02387 1.21473 0.96498 0.97027 1.01477 1.22247 0.93070 0.97522 1.04655 1.21761 0.93531 0.91695 0.87376 0.90941 1.86742 1.77675 1.57612 1.16345 1.22533 0.88009 1.00702 1.08431 1.21784 0.92162 0.82702 0.74716 1.90840 1.71333 1.32835 1.48336 1.43452 1.03212 1.11211 1.72739 1.17325 0.83684 0.95637 0.94315 1.20945 0.93862 1.03406 1.03506 1.21037 0.94123 0.96157 0.95781 1.21347 1.00570 1.00473 1.04701 1.19401 0.91695 0.89008 0.91544 1.83542 1.20720 1.52249 1.59225 1.20748 0.78469 1.27680 1.20510 0.89620 1.25181 0.95177 0.98413 0.99675 1.69709 1.04628 1.40470 1.41153 0.85329 0.78449 0.78665 0.78928 1.18610 1.18583 1.20193 1.20079 0.90547 1.05246 1.06787 0.93098 0.91924 0.92070 0.92995 0.93233 0.88888 0.89522 0.77023 0.83952 0.84892 0.72801 0.81564 0.82673 0.86939 0.90481 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.84 16 2 C -0.13 -1.79 5.83 30.59 0.18 -1.61 16 3 C -0.14 -1.40 4.89 30.60 0.15 -1.26 16 4 C 0.12 2.03 2.51 30.59 0.08 2.11 16 5 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 6 O -0.58 -13.86 12.11 -135.19 -1.64 -15.50 16 7 C -0.16 -1.96 5.38 29.85 0.16 -1.80 16 8 C 0.50 12.85 7.45 87.66 0.65 13.51 16 9 O -0.56 -22.21 13.13 10.74 0.14 -22.07 16 10 N -0.66 -15.01 5.34 -303.56 -1.62 -16.63 16 11 C 0.19 6.20 6.27 38.14 0.24 6.44 16 12 C -0.20 -5.60 9.96 22.42 0.22 -5.38 16 13 C -0.05 -1.76 10.03 22.23 0.22 -1.53 16 14 C -0.25 -11.43 9.13 22.41 0.20 -11.22 16 15 C 0.13 6.87 6.64 22.56 0.15 7.02 16 16 O -0.25 -14.95 8.58 -22.72 -0.20 -15.15 16 17 C -0.40 -24.81 9.90 67.92 0.67 -24.14 16 18 H 0.09 5.48 5.53 -2.91 -0.02 5.47 16 19 C 0.01 0.87 5.49 84.83 0.47 1.33 16 20 N -0.92 -56.69 13.96 21.61 0.30 -56.38 16 21 Si 0.96 48.92 28.62 68.60 1.96 50.89 16 22 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.28 -14.78 7.11 99.48 0.71 -14.08 16 25 C -0.20 -9.31 8.60 22.51 0.19 -9.11 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.91 7.82 -2.39 -0.02 0.89 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.38 5.79 9.05 -74.06 -0.67 5.12 16 34 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.43 5.08 8.82 -92.70 -0.82 4.26 16 37 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.16 3.94 8.06 -2.92 -0.02 3.91 16 39 H 0.11 5.54 5.71 -2.91 -0.02 5.52 16 40 H 0.29 16.12 8.31 -92.71 -0.77 15.35 16 41 H 0.11 5.27 6.43 -2.91 -0.02 5.25 16 Total: -1.00 -86.16 345.94 2.83 -83.33 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -0.43 Total: 17.98 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.30 Total: -26.49 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.32 Total: -73.01 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -1.69 Total: -52.71 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.96 Total: 50.89 kcal Total: -86.16 2.83 -83.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750221016.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.265 kcal (2) G-P(sol) polarization free energy of solvation -86.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds