Wall clock time and date at job start Tue Mar 31 2020 07:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 C 1.53003 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47620 * 55.00320 * 4 3 2 6 6 O 1.42903 * 109.47139 * 294.99538 * 4 3 2 7 7 C 1.52999 * 109.46695 * 175.00018 * 4 3 2 8 8 C 1.50705 * 109.46916 * 184.99870 * 7 4 3 9 9 O 1.21277 * 120.00149 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99702 * 180.02562 * 8 7 4 11 11 C 1.39922 * 119.99596 * 174.79206 * 10 8 7 12 12 C 1.38959 * 120.03604 * 326.14888 * 11 10 8 13 13 C 1.38168 * 120.06710 * 179.76758 * 12 11 10 14 14 C 1.38168 * 120.13412 * 0.51491 * 13 12 11 15 15 C 1.38912 * 120.07440 * 359.74305 * 14 13 12 16 16 O 1.35751 * 120.03187 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99570 * 185.92653 * 16 15 14 18 18 H 1.08005 * 120.00657 * 5.40485 * 17 16 15 19 19 C 1.38655 * 119.99894 * 185.40592 * 17 16 15 20 20 N 1.31558 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47095 * 119.99836 * 21 19 17 24 24 H 1.48496 * 109.46843 * 239.99614 * 21 19 17 25 25 C 1.38716 * 120.03696 * 146.43334 * 11 10 8 26 26 H 1.09004 * 109.47527 * 300.00270 * 1 2 3 27 27 H 1.09003 * 109.46966 * 60.00050 * 1 2 3 28 28 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47108 * 239.99425 * 2 1 3 30 30 H 1.09000 * 109.47104 * 120.00474 * 2 1 3 31 31 H 1.08993 * 109.47185 * 60.00181 * 3 2 1 32 32 H 1.08993 * 109.47080 * 299.99721 * 3 2 1 33 33 H 0.96693 * 113.99979 * 300.00283 * 6 4 3 34 34 H 1.09003 * 109.47394 * 304.99727 * 7 4 3 35 35 H 1.08997 * 109.47558 * 65.00261 * 7 4 3 36 36 H 0.96995 * 120.00280 * 354.78972 * 10 8 7 37 37 H 1.08000 * 119.97034 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93306 * 180.23046 * 13 12 11 39 39 H 1.08004 * 119.96056 * 179.71563 * 14 13 12 40 40 H 0.97001 * 120.00028 * 180.02562 * 20 19 17 41 41 H 1.08009 * 120.06628 * 359.95111 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8728 1.2202 7 6 4.0800 2.8794 -0.1264 8 6 5.5819 2.8703 -0.2505 9 8 6.1850 1.8182 -0.2390 10 7 6.2549 4.0316 -0.3732 11 6 7.6541 4.0320 -0.3788 12 6 8.3530 3.1074 0.3877 13 6 9.7346 3.1041 0.3789 14 6 10.4256 4.0264 -0.3832 15 6 9.7328 4.9568 -1.1475 16 8 10.4126 5.8629 -1.8956 17 6 9.6850 6.8136 -2.5157 18 1 8.6223 6.8836 -2.3360 19 6 10.3010 7.7016 -3.3844 20 7 11.5956 7.6167 -3.6031 21 14 9.2929 9.0183 -4.2442 22 1 7.8711 8.9013 -3.8318 23 1 9.8085 10.3598 -3.8701 24 1 9.3975 8.8403 -5.7148 25 6 8.3451 4.9593 -1.1449 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7619 1.3472 2.0131 34 1 3.6450 3.3432 -1.0117 35 1 3.7921 3.4459 0.7592 36 1 5.7693 4.8670 -0.4577 37 1 7.8157 2.3878 0.9877 38 1 10.2756 2.3821 0.9726 39 1 11.5057 4.0243 -0.3844 40 1 12.0266 8.2381 -4.2105 41 1 7.8042 5.6814 -1.7386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750221023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:30 Heat of formation + Delta-G solvation = -104.160855 kcal Electronic energy + Delta-G solvation = -22680.769322 eV Core-core repulsion = 19139.952035 eV Total energy + Delta-G solvation = -3540.817287 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.28450 -38.84269 -37.83915 -36.31360 -34.39276 -34.16286 -32.25982 -31.58329 -29.38932 -28.65148 -27.30610 -25.30264 -23.23798 -21.81984 -21.60807 -21.42083 -19.94631 -17.97898 -17.79163 -16.88038 -16.64322 -16.16029 -15.52731 -15.30116 -14.96307 -14.53361 -14.36563 -14.19519 -13.89928 -13.77704 -13.56151 -13.45851 -12.95365 -12.56088 -12.27928 -12.11506 -11.92751 -11.72470 -11.57227 -11.51489 -11.13861 -11.01781 -10.95910 -10.93275 -10.79057 -10.45530 -10.19880 -9.81758 -9.60164 -9.35144 -8.81594 -7.71860 -7.14497 -6.45573 -4.05223 1.98671 2.38664 2.89111 3.10518 3.11123 3.16516 3.22855 3.94689 4.16757 4.36837 4.48871 4.60833 4.68750 4.80973 4.89947 5.04377 5.09605 5.16961 5.25173 5.28572 5.31049 5.45325 5.54759 5.71506 5.74265 5.76535 5.98583 6.00943 6.02317 6.09314 6.26682 6.29772 6.65137 6.98688 7.00882 7.12802 7.32731 7.42540 7.52075 7.72105 7.82935 7.98735 8.36744 8.99858 9.70961 10.72661 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.003005 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.160472 B = 9316.864042 C =10467.283240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.152 4.152 4 C 0.123 3.877 5 H 0.106 0.894 6 O -0.544 6.544 7 C -0.176 4.176 8 C 0.508 3.492 9 O -0.503 6.503 10 N -0.674 5.674 11 C 0.181 3.819 12 C -0.205 4.205 13 C -0.063 4.063 14 C -0.201 4.201 15 C 0.168 3.832 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.941 3.059 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.257 4.257 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.366 0.634 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.405 0.595 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 -7.774 7.554 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.190 4.190 4 C 0.063 3.937 5 H 0.123 0.877 6 O -0.348 6.348 7 C -0.216 4.216 8 C 0.294 3.706 9 O -0.377 6.377 10 N -0.319 5.319 11 C 0.088 3.912 12 C -0.226 4.226 13 C -0.082 4.082 14 C -0.221 4.221 15 C 0.114 3.886 16 O -0.080 6.080 17 C -0.468 4.468 18 H 0.107 0.893 19 C -0.166 4.166 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.192 1.192 23 H -0.201 1.201 24 H -0.202 1.202 25 C -0.279 4.279 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.212 0.788 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.239 0.761 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.896 -8.832 6.968 21.991 hybrid contribution -1.135 1.717 -0.285 2.078 sum -20.031 -7.116 6.683 22.283 Atomic orbital electron populations 1.21790 0.96017 1.01621 1.01602 1.21455 0.95369 0.96261 1.02867 1.22357 0.95769 0.98047 1.02791 1.21697 0.91558 0.91461 0.88985 0.87656 1.86742 1.76853 1.56284 1.14899 1.22509 0.93196 1.00861 1.05058 1.20551 0.89711 0.83698 0.76626 1.90767 1.69737 1.30486 1.46662 1.43569 1.05635 1.09751 1.72959 1.17414 0.81092 0.97018 0.95711 1.20557 0.93942 1.03182 1.04902 1.20541 0.93400 0.96873 0.97389 1.20252 0.99639 0.99177 1.03007 1.19088 0.89787 0.89213 0.90560 1.84022 1.34422 1.34874 1.54714 1.21306 0.93104 1.07543 1.24803 0.89260 1.25284 0.96200 0.98493 0.96587 1.70047 1.08838 1.36431 1.34386 0.85658 0.79078 0.79667 0.79032 1.19240 1.20143 1.20177 1.20820 0.94434 1.05742 1.06904 0.92884 0.92874 0.92762 0.91912 0.91221 0.91564 0.90957 0.78774 0.87985 0.88505 0.76063 0.86286 0.86619 0.86392 0.92074 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.88 5.83 -26.73 -0.16 -1.04 16 3 C -0.15 -1.00 4.89 -26.73 -0.13 -1.13 16 4 C 0.12 1.14 2.51 -26.73 -0.07 1.07 16 5 H 0.11 1.20 7.96 -51.93 -0.41 0.79 16 6 O -0.54 -5.94 12.11 -49.66 -0.60 -6.54 16 7 C -0.18 -1.53 5.38 -27.88 -0.15 -1.68 16 8 C 0.51 7.22 7.44 -10.98 -0.08 7.14 16 9 O -0.50 -9.33 13.13 -8.87 -0.12 -9.44 16 10 N -0.67 -9.99 5.34 -9.88 -0.05 -10.04 16 11 C 0.18 3.49 6.27 -83.72 -0.52 2.97 16 12 C -0.21 -4.03 8.65 -39.34 -0.34 -4.37 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 14 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16 15 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 16 O -0.18 -5.05 9.76 0.05 0.00 -5.05 16 17 C -0.39 -10.84 9.44 30.89 0.29 -10.55 16 18 H 0.09 2.27 5.30 -52.48 -0.28 1.99 16 19 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 20 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 21 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 C -0.26 -5.62 9.04 -39.21 -0.35 -5.97 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.37 2.55 9.04 45.56 0.41 2.97 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.62 8.82 -40.82 -0.36 4.26 16 37 H 0.12 2.31 6.45 -52.49 -0.34 1.97 16 38 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.13 2.75 5.72 -52.48 -0.30 2.45 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -34.57 347.08 -7.14 -41.71 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.05 Total: 9.08 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.29 Total: -15.70 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.71 Total: -34.51 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.72 Total: -21.04 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.57 -7.14 -41.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750221023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.453 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds