Wall clock time and date at job start Tue Mar 31 2020 07:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 C 1.53003 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47620 * 55.00320 * 4 3 2 6 6 O 1.42903 * 109.47139 * 294.99538 * 4 3 2 7 7 C 1.52999 * 109.46695 * 175.00018 * 4 3 2 8 8 C 1.50705 * 109.46916 * 184.99870 * 7 4 3 9 9 O 1.21277 * 120.00149 * 359.97438 * 8 7 4 10 10 N 1.34781 * 119.99702 * 180.02562 * 8 7 4 11 11 C 1.39922 * 119.99596 * 174.79206 * 10 8 7 12 12 C 1.38959 * 120.03604 * 326.14888 * 11 10 8 13 13 C 1.38168 * 120.06710 * 179.76758 * 12 11 10 14 14 C 1.38168 * 120.13412 * 0.51491 * 13 12 11 15 15 C 1.38912 * 120.07440 * 359.74305 * 14 13 12 16 16 O 1.35751 * 120.03187 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99570 * 185.92653 * 16 15 14 18 18 H 1.08005 * 120.00657 * 5.40485 * 17 16 15 19 19 C 1.38655 * 119.99894 * 185.40592 * 17 16 15 20 20 N 1.31558 * 119.99915 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47095 * 119.99836 * 21 19 17 24 24 H 1.48496 * 109.46843 * 239.99614 * 21 19 17 25 25 C 1.38716 * 120.03696 * 146.43334 * 11 10 8 26 26 H 1.09004 * 109.47527 * 300.00270 * 1 2 3 27 27 H 1.09003 * 109.46966 * 60.00050 * 1 2 3 28 28 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47108 * 239.99425 * 2 1 3 30 30 H 1.09000 * 109.47104 * 120.00474 * 2 1 3 31 31 H 1.08993 * 109.47185 * 60.00181 * 3 2 1 32 32 H 1.08993 * 109.47080 * 299.99721 * 3 2 1 33 33 H 0.96693 * 113.99979 * 300.00283 * 6 4 3 34 34 H 1.09003 * 109.47394 * 304.99727 * 7 4 3 35 35 H 1.08997 * 109.47558 * 65.00261 * 7 4 3 36 36 H 0.96995 * 120.00280 * 354.78972 * 10 8 7 37 37 H 1.08000 * 119.97034 * 0.02562 * 12 11 10 38 38 H 1.07997 * 119.93306 * 180.23046 * 13 12 11 39 39 H 1.08004 * 119.96056 * 179.71563 * 14 13 12 40 40 H 0.97001 * 120.00028 * 180.02562 * 20 19 17 41 41 H 1.08009 * 120.06628 * 359.95111 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8728 1.2202 7 6 4.0800 2.8794 -0.1264 8 6 5.5819 2.8703 -0.2505 9 8 6.1850 1.8182 -0.2390 10 7 6.2549 4.0316 -0.3732 11 6 7.6541 4.0320 -0.3788 12 6 8.3530 3.1074 0.3877 13 6 9.7346 3.1041 0.3789 14 6 10.4256 4.0264 -0.3832 15 6 9.7328 4.9568 -1.1475 16 8 10.4126 5.8629 -1.8956 17 6 9.6850 6.8136 -2.5157 18 1 8.6223 6.8836 -2.3360 19 6 10.3010 7.7016 -3.3844 20 7 11.5956 7.6167 -3.6031 21 14 9.2929 9.0183 -4.2442 22 1 7.8711 8.9013 -3.8318 23 1 9.8085 10.3598 -3.8701 24 1 9.3975 8.8403 -5.7148 25 6 8.3451 4.9593 -1.1449 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7619 1.3472 2.0131 34 1 3.6450 3.3432 -1.0117 35 1 3.7921 3.4459 0.7592 36 1 5.7693 4.8670 -0.4577 37 1 7.8157 2.3878 0.9877 38 1 10.2756 2.3821 0.9726 39 1 11.5057 4.0243 -0.3844 40 1 12.0266 8.2381 -4.2105 41 1 7.8042 5.6814 -1.7386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750221023.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:29 Heat of formation + Delta-G solvation = -128.803899 kcal Electronic energy + Delta-G solvation = -22681.837925 eV Core-core repulsion = 19139.952035 eV Total energy + Delta-G solvation = -3541.885890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.58745 -40.42839 -38.85087 -37.88822 -35.60758 -34.96738 -34.23749 -32.45039 -30.94501 -30.19562 -28.12474 -27.25422 -24.26734 -23.50895 -22.71428 -22.06783 -21.29231 -19.78212 -19.31201 -18.14987 -17.45117 -17.22736 -16.84936 -16.76688 -16.29755 -15.88428 -15.78182 -15.52699 -15.14692 -14.99156 -14.77883 -14.53397 -14.18051 -14.11196 -13.58863 -13.26407 -12.95887 -12.79712 -12.68309 -12.59602 -12.52102 -12.45129 -12.14242 -12.08045 -11.63178 -11.48812 -11.45376 -11.26224 -10.97379 -10.76050 -10.64105 -9.35699 -8.87176 -8.46501 -6.15402 0.40326 0.68528 1.36227 1.44770 1.54823 1.69382 2.07685 2.18235 2.83658 3.16700 3.47342 3.50608 3.65855 3.75304 4.09807 4.11875 4.21538 4.31084 4.32904 4.39959 4.45241 4.63883 4.64762 4.68929 4.76296 4.78935 4.97110 5.01438 5.04011 5.10974 5.13107 5.29757 5.39974 5.42392 5.49394 5.50668 5.66549 5.66723 6.01496 6.17537 6.51570 6.97711 6.97776 7.21397 7.77500 8.76861 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021093 B = 0.003005 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.160472 B = 9316.864042 C =10467.283240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.141 4.141 4 C 0.122 3.878 5 H 0.075 0.925 6 O -0.571 6.571 7 C -0.162 4.162 8 C 0.505 3.495 9 O -0.550 6.550 10 N -0.666 5.666 11 C 0.188 3.812 12 C -0.201 4.201 13 C -0.053 4.053 14 C -0.216 4.216 15 C 0.133 3.867 16 O -0.227 6.227 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.246 1.246 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.261 4.261 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.382 0.618 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.423 0.577 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.118 0.882 40 H 0.272 0.728 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -7.356 8.392 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.178 4.178 4 C 0.063 3.937 5 H 0.093 0.907 6 O -0.378 6.378 7 C -0.201 4.201 8 C 0.294 3.706 9 O -0.426 6.426 10 N -0.313 5.313 11 C 0.094 3.906 12 C -0.222 4.222 13 C -0.072 4.072 14 C -0.236 4.236 15 C 0.082 3.918 16 O -0.133 6.133 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.840 3.160 22 H -0.169 1.169 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.283 4.283 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.261 0.739 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.575 -8.427 7.851 25.343 hybrid contribution -0.091 1.325 -0.360 1.376 sum -22.666 -7.102 7.491 24.905 Atomic orbital electron populations 1.21766 0.94922 1.01814 1.02250 1.21457 0.96302 0.96771 1.01700 1.22263 0.93384 0.97725 1.04442 1.21668 0.93268 0.91167 0.87636 0.90696 1.86702 1.77544 1.57429 1.16128 1.22561 0.88315 1.01185 1.08078 1.21617 0.91904 0.82405 0.74657 1.90752 1.71183 1.32074 1.48580 1.43621 1.03730 1.11317 1.72620 1.17472 0.83518 0.95535 0.94124 1.20845 0.94207 1.02826 1.04302 1.20916 0.93607 0.96282 0.96365 1.20466 1.00004 0.99604 1.03529 1.19617 0.91308 0.89734 0.91128 1.83989 1.36071 1.36524 1.56741 1.21855 0.93901 1.07982 1.25056 0.87853 1.26638 0.97487 1.00968 0.97104 1.70199 1.11171 1.38355 1.36154 0.84505 0.78169 0.75929 0.77436 1.16942 1.19422 1.19681 1.20861 0.93583 1.06473 1.07383 0.92072 0.92310 0.92919 0.93182 0.92435 0.89512 0.89536 0.76910 0.85015 0.84896 0.73864 0.85428 0.83083 0.86362 0.91853 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.59 5.83 30.59 0.18 -1.41 16 3 C -0.14 -1.38 4.89 30.60 0.15 -1.23 16 4 C 0.12 1.97 2.51 30.59 0.08 2.05 16 5 H 0.07 1.66 7.96 -2.39 -0.02 1.64 16 6 O -0.57 -11.44 12.11 -135.19 -1.64 -13.08 16 7 C -0.16 -2.15 5.38 29.85 0.16 -1.99 16 8 C 0.50 13.03 7.44 87.66 0.65 13.68 16 9 O -0.55 -19.61 13.13 10.77 0.14 -19.47 16 10 N -0.67 -17.97 5.34 -303.56 -1.62 -19.59 16 11 C 0.19 7.01 6.27 38.14 0.24 7.25 16 12 C -0.20 -7.57 8.65 22.43 0.19 -7.38 16 13 C -0.05 -2.00 10.03 22.24 0.22 -1.77 16 14 C -0.22 -9.61 9.99 22.41 0.22 -9.38 16 15 C 0.13 6.74 6.64 22.56 0.15 6.89 16 16 O -0.23 -13.62 9.76 -22.73 -0.22 -13.84 16 17 C -0.41 -23.53 9.44 67.92 0.64 -22.89 16 18 H 0.10 5.33 5.30 -2.91 -0.02 5.31 16 19 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 20 N -0.92 -56.18 13.67 21.61 0.30 -55.89 16 21 Si 1.02 41.70 29.55 68.60 2.03 43.73 16 22 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 25 C -0.26 -11.41 9.04 22.51 0.20 -11.21 16 26 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.86 7.82 -2.39 -0.02 0.84 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.38 4.32 9.04 -74.06 -0.67 3.65 16 34 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 8.22 8.82 -92.71 -0.82 7.40 16 37 H 0.13 4.68 6.45 -2.91 -0.02 4.66 16 38 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.13 5.53 5.72 -2.91 -0.02 5.51 16 Total: -1.00 -79.95 347.08 2.83 -77.13 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.43 Total: 30.08 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.27 Total: -29.07 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.33 Total: -75.48 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -1.72 Total: -46.38 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -79.95 2.83 -77.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750221023.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.678 kcal (2) G-P(sol) polarization free energy of solvation -79.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds