Wall clock time and date at job start Tue Mar 31 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46993 * 2 1 4 4 C 1.53004 * 109.47067 * 239.99720 * 2 1 3 5 5 C 1.52999 * 109.47115 * 119.99909 * 2 1 3 6 6 H 1.09003 * 109.47352 * 294.34788 * 5 2 1 7 7 O 1.42902 * 109.47340 * 54.35401 * 5 2 1 8 8 C 1.50707 * 109.46883 * 174.35256 * 5 2 1 9 9 O 1.21290 * 119.99521 * 249.91846 * 8 5 2 10 10 N 1.34773 * 119.99956 * 69.92172 * 8 5 2 11 11 C 1.39928 * 119.99944 * 184.41894 * 10 8 5 12 12 C 1.38962 * 120.03320 * 215.17506 * 11 10 8 13 13 C 1.38158 * 120.06171 * 179.76811 * 12 11 10 14 14 C 1.38171 * 120.13974 * 0.50615 * 13 12 11 15 15 C 1.38905 * 120.07390 * 359.74688 * 14 13 12 16 16 O 1.35750 * 120.03991 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99692 * 5.60491 * 16 15 14 18 18 H 1.08001 * 120.00153 * 3.61157 * 17 16 15 19 19 C 1.38654 * 119.99910 * 183.60443 * 17 16 15 20 20 N 1.31555 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47003 * 60.00352 * 21 19 17 23 23 H 1.48494 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47286 * 300.00522 * 21 19 17 25 25 C 1.38715 * 120.03556 * 35.44814 * 11 10 8 26 26 H 1.09006 * 109.46774 * 299.99919 * 1 2 3 27 27 H 1.08991 * 109.47361 * 60.00222 * 1 2 3 28 28 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47118 * 185.96216 * 3 2 1 30 30 H 1.08998 * 109.47432 * 305.95345 * 3 2 1 31 31 H 1.08999 * 109.47581 * 65.95684 * 3 2 1 32 32 H 1.08996 * 109.47141 * 299.99991 * 4 2 1 33 33 H 1.09002 * 109.46613 * 60.00173 * 4 2 1 34 34 H 1.08996 * 109.46870 * 179.97438 * 4 2 1 35 35 H 0.96694 * 114.00126 * 59.99856 * 7 5 2 36 36 H 0.96995 * 120.00334 * 4.41941 * 10 8 5 37 37 H 1.07998 * 119.97027 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.93597 * 180.23062 * 13 12 11 39 39 H 1.07999 * 119.96410 * 179.76770 * 14 13 12 40 40 H 0.97003 * 119.99693 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.06513 * 359.95517 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.7617 -0.1523 2.1364 7 8 1.4585 -2.0248 1.3175 8 6 3.5406 -0.8434 1.1813 9 8 4.0533 -1.9291 1.0092 10 7 4.3126 0.2535 1.3118 11 6 5.6998 0.1553 1.1567 12 6 6.5436 0.9428 1.9304 13 6 7.9135 0.8428 1.7811 14 6 8.4484 -0.0324 0.8554 15 6 7.6101 -0.8186 0.0753 16 8 8.1364 -1.6778 -0.8344 17 6 9.4785 -1.8055 -0.8507 18 1 10.0796 -1.2823 -0.1217 19 6 10.0870 -2.6085 -1.8032 20 7 9.3548 -3.2454 -2.6914 21 14 11.9465 -2.7859 -1.8253 22 1 12.4050 -3.3534 -0.5318 23 1 12.3441 -3.6920 -2.9326 24 1 12.5686 -1.4530 -2.0293 25 6 6.2338 -0.7243 0.2265 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1248 1.4444 -0.1067 30 1 1.5922 1.9862 -0.8319 31 1 1.7664 1.9247 0.9385 32 1 1.6767 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.6649 -2.5877 0.5588 36 1 3.9067 1.1111 1.5132 37 1 6.1284 1.6314 2.6514 38 1 8.5676 1.4533 2.3861 39 1 9.5196 -0.1055 0.7384 40 1 9.7806 -3.8070 -3.3580 41 1 5.5799 -1.3348 -0.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764849515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:10 Heat of formation + Delta-G solvation = -92.005107 kcal Electronic energy + Delta-G solvation = -23887.810691 eV Core-core repulsion = 20347.520516 eV Total energy + Delta-G solvation = -3540.290174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83027 -38.98093 -37.69337 -36.44623 -35.16014 -33.91212 -32.25243 -29.77848 -28.87466 -27.53474 -27.37863 -26.92109 -25.27166 -22.52324 -21.51618 -20.50191 -19.56889 -18.40359 -17.89931 -17.09246 -16.42126 -15.89391 -15.35252 -15.09351 -14.88116 -14.61451 -14.27909 -14.03394 -13.76940 -13.56090 -13.33114 -12.97043 -12.71274 -12.53531 -12.44747 -12.26059 -11.98282 -11.74033 -11.65847 -11.54620 -11.21669 -11.13242 -11.09133 -10.99364 -10.74312 -10.52844 -10.48205 -9.76588 -9.56431 -9.16675 -8.81533 -7.71374 -7.20465 -6.42666 -4.01652 1.94963 2.32625 2.78822 3.12640 3.15412 3.17315 3.19243 3.98260 4.11023 4.32812 4.46188 4.54811 4.63777 4.79996 5.07348 5.13462 5.20294 5.32674 5.35493 5.46517 5.53312 5.60477 5.66379 5.70541 5.76072 5.80985 5.91755 6.06726 6.08292 6.11935 6.20645 6.34723 6.66397 6.84626 7.00627 7.05755 7.32724 7.34615 7.45330 7.65032 7.77145 8.01807 8.28695 9.02234 9.72738 10.75181 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003837 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.090987 B = 7295.658733 C = 7956.543753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 C -0.160 4.160 4 C -0.154 4.154 5 C 0.104 3.896 6 H 0.121 0.879 7 O -0.536 6.536 8 C 0.481 3.519 9 O -0.503 6.503 10 N -0.668 5.668 11 C 0.175 3.825 12 C -0.236 4.236 13 C -0.058 4.058 14 C -0.244 4.244 15 C 0.167 3.833 16 O -0.173 6.173 17 C -0.392 4.392 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.186 4.186 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.384 0.616 36 H 0.406 0.594 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.428 10.129 5.757 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 C -0.217 4.217 4 C -0.211 4.211 5 C 0.041 3.959 6 H 0.138 0.862 7 O -0.341 6.341 8 C 0.267 3.733 9 O -0.376 6.376 10 N -0.316 5.316 11 C 0.082 3.918 12 C -0.257 4.257 13 C -0.077 4.077 14 C -0.264 4.264 15 C 0.112 3.888 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.207 4.207 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.234 0.766 36 H 0.243 0.757 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.423 9.201 5.790 18.061 hybrid contribution 1.087 0.239 -0.354 1.168 sum -13.337 9.440 5.436 17.220 Atomic orbital electron populations 1.21765 0.92871 1.02696 1.01768 1.21163 0.97238 0.96215 0.94880 1.22138 1.02399 0.94548 1.02629 1.21986 1.02035 1.00322 0.96747 1.21935 0.88098 0.86211 0.99705 0.86190 1.86545 1.73641 1.24080 1.49878 1.21653 0.90365 0.84541 0.76732 1.90818 1.74579 1.26378 1.45868 1.43729 1.05706 1.11383 1.70809 1.17185 0.81344 0.98018 0.95254 1.20280 0.93364 1.07188 1.04865 1.20515 0.93878 0.96748 0.96519 1.21181 1.00593 1.02341 1.02305 1.19109 0.91789 0.88750 0.89128 1.83989 1.23950 1.51977 1.47698 1.21299 0.78880 1.30268 1.16407 0.89048 1.25294 1.00497 0.95773 0.94926 1.70040 1.35962 1.27568 1.15980 0.85777 0.80569 0.78656 0.78394 1.19469 1.20275 1.19500 1.19952 0.92965 1.05145 1.02644 0.92471 0.92334 0.91714 0.91220 0.91423 0.92050 0.92152 0.91624 0.91777 0.76581 0.75722 0.87390 0.87019 0.85429 0.91961 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.27 37.16 0.31 -0.71 16 2 C -0.09 -0.85 0.63 -154.51 -0.10 -0.95 16 3 C -0.16 -1.25 7.31 37.16 0.27 -0.97 16 4 C -0.15 -1.65 7.94 37.16 0.30 -1.35 16 5 C 0.10 1.14 2.77 -27.88 -0.08 1.06 16 6 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 7 O -0.54 -6.59 12.12 -54.94 -0.67 -7.25 16 8 C 0.48 7.26 5.22 -10.98 -0.06 7.21 16 9 O -0.50 -10.11 14.10 -14.16 -0.20 -10.31 16 10 N -0.67 -9.43 4.09 -9.88 -0.04 -9.47 16 11 C 0.17 3.23 6.24 -83.72 -0.52 2.71 16 12 C -0.24 -4.02 9.96 -39.34 -0.39 -4.42 16 13 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 14 C -0.24 -5.38 9.14 -39.36 -0.36 -5.74 16 15 C 0.17 4.20 6.64 -39.14 -0.26 3.94 16 16 O -0.17 -5.11 9.76 0.05 0.00 -5.11 16 17 C -0.39 -11.18 9.46 30.89 0.29 -10.89 16 18 H 0.09 2.39 5.26 -52.49 -0.28 2.11 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -25.69 13.67 55.48 0.76 -24.94 16 21 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.19 -4.23 8.60 -39.21 -0.34 -4.57 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 7.54 -51.93 -0.39 0.13 16 29 H 0.07 0.65 5.80 -51.93 -0.30 0.35 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.61 6.90 -51.93 -0.36 0.26 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.87 7.06 -51.93 -0.37 0.51 16 35 H 0.38 4.32 7.24 45.56 0.33 4.65 16 36 H 0.41 4.12 6.86 -40.82 -0.28 3.84 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.13 2.79 5.68 -52.49 -0.30 2.49 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 41 H 0.13 3.03 6.54 -52.48 -0.34 2.69 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -34.17 334.49 -6.36 -40.53 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -4.80 Total: 10.90 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.43 Total: -15.12 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.72 Total: -34.41 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.87 Total: -22.68 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.17 -6.36 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764849515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.472 kcal (2) G-P(sol) polarization free energy of solvation -34.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds