Wall clock time and date at job start Tue Mar 31 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46993 * 2 1 4 4 C 1.53004 * 109.47067 * 239.99720 * 2 1 3 5 5 C 1.52999 * 109.47115 * 119.99909 * 2 1 3 6 6 H 1.09003 * 109.47352 * 294.34788 * 5 2 1 7 7 O 1.42902 * 109.47340 * 54.35401 * 5 2 1 8 8 C 1.50707 * 109.46883 * 174.35256 * 5 2 1 9 9 O 1.21290 * 119.99521 * 249.91846 * 8 5 2 10 10 N 1.34773 * 119.99956 * 69.92172 * 8 5 2 11 11 C 1.39928 * 119.99944 * 184.41894 * 10 8 5 12 12 C 1.38962 * 120.03320 * 215.17506 * 11 10 8 13 13 C 1.38158 * 120.06171 * 179.76811 * 12 11 10 14 14 C 1.38171 * 120.13974 * 0.50615 * 13 12 11 15 15 C 1.38905 * 120.07390 * 359.74688 * 14 13 12 16 16 O 1.35750 * 120.03991 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99692 * 5.60491 * 16 15 14 18 18 H 1.08001 * 120.00153 * 3.61157 * 17 16 15 19 19 C 1.38654 * 119.99910 * 183.60443 * 17 16 15 20 20 N 1.31555 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99898 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47003 * 60.00352 * 21 19 17 23 23 H 1.48494 * 109.47100 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47286 * 300.00522 * 21 19 17 25 25 C 1.38715 * 120.03556 * 35.44814 * 11 10 8 26 26 H 1.09006 * 109.46774 * 299.99919 * 1 2 3 27 27 H 1.08991 * 109.47361 * 60.00222 * 1 2 3 28 28 H 1.08996 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47118 * 185.96216 * 3 2 1 30 30 H 1.08998 * 109.47432 * 305.95345 * 3 2 1 31 31 H 1.08999 * 109.47581 * 65.95684 * 3 2 1 32 32 H 1.08996 * 109.47141 * 299.99991 * 4 2 1 33 33 H 1.09002 * 109.46613 * 60.00173 * 4 2 1 34 34 H 1.08996 * 109.46870 * 179.97438 * 4 2 1 35 35 H 0.96694 * 114.00126 * 59.99856 * 7 5 2 36 36 H 0.96995 * 120.00334 * 4.41941 * 10 8 5 37 37 H 1.07998 * 119.97027 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.93597 * 180.23062 * 13 12 11 39 39 H 1.07999 * 119.96410 * 179.76770 * 14 13 12 40 40 H 0.97003 * 119.99693 * 179.97438 * 20 19 17 41 41 H 1.08003 * 120.06513 * 359.95517 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 1.7617 -0.1523 2.1364 7 8 1.4585 -2.0248 1.3175 8 6 3.5406 -0.8434 1.1813 9 8 4.0533 -1.9291 1.0092 10 7 4.3126 0.2535 1.3118 11 6 5.6998 0.1553 1.1567 12 6 6.5436 0.9428 1.9304 13 6 7.9135 0.8428 1.7811 14 6 8.4484 -0.0324 0.8554 15 6 7.6101 -0.8186 0.0753 16 8 8.1364 -1.6778 -0.8344 17 6 9.4785 -1.8055 -0.8507 18 1 10.0796 -1.2823 -0.1217 19 6 10.0870 -2.6085 -1.8032 20 7 9.3548 -3.2454 -2.6914 21 14 11.9465 -2.7859 -1.8253 22 1 12.4050 -3.3534 -0.5318 23 1 12.3441 -3.6920 -2.9326 24 1 12.5686 -1.4530 -2.0293 25 6 6.2338 -0.7243 0.2265 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1248 1.4444 -0.1067 30 1 1.5922 1.9862 -0.8319 31 1 1.7664 1.9247 0.9385 32 1 1.6767 -1.7490 -1.2492 33 1 1.6766 -0.2075 -2.1392 34 1 3.1300 -0.7209 -1.2494 35 1 1.6649 -2.5877 0.5588 36 1 3.9067 1.1111 1.5132 37 1 6.1284 1.6314 2.6514 38 1 8.5676 1.4533 2.3861 39 1 9.5196 -0.1055 0.7384 40 1 9.7806 -3.8070 -3.3580 41 1 5.5799 -1.3348 -0.3786 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764849515.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:09 Heat of formation + Delta-G solvation = -116.954814 kcal Electronic energy + Delta-G solvation = -23888.892591 eV Core-core repulsion = 20347.520516 eV Total energy + Delta-G solvation = -3541.372075 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.05101 -40.62749 -38.99754 -37.97693 -36.23039 -35.21474 -34.27402 -31.36457 -30.43047 -28.38134 -28.22266 -27.85474 -27.28548 -24.01540 -23.15276 -21.86826 -20.47161 -20.01955 -19.34636 -18.76290 -17.57049 -17.11715 -16.78070 -16.62935 -16.24441 -15.96225 -15.71699 -15.52565 -15.43784 -14.74897 -14.40070 -14.35033 -14.21289 -13.66402 -13.59829 -13.23958 -13.15103 -13.07003 -12.93120 -12.76468 -12.65522 -12.53012 -12.34828 -12.17352 -11.96124 -11.80416 -11.48781 -11.38815 -11.17972 -10.77213 -10.52731 -9.36133 -8.90225 -8.48133 -6.17671 0.37444 0.68066 1.33480 1.43693 1.50856 1.52522 1.93965 2.18393 2.81542 3.15453 3.17351 3.38955 3.53627 3.68729 3.77478 3.99257 4.10764 4.31852 4.35398 4.39518 4.42041 4.65074 4.67802 4.70870 4.74185 4.86385 4.96347 4.99982 5.03501 5.07835 5.09967 5.24386 5.33028 5.37959 5.42251 5.46634 5.61246 5.71893 6.00840 6.17148 6.28715 6.50269 6.95435 7.09538 7.77264 8.75441 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022393 B = 0.003837 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.090987 B = 7295.658733 C = 7956.543753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.161 4.161 4 C -0.156 4.156 5 C 0.111 3.889 6 H 0.156 0.844 7 O -0.545 6.545 8 C 0.478 3.522 9 O -0.561 6.561 10 N -0.650 5.650 11 C 0.182 3.818 12 C -0.205 4.205 13 C -0.048 4.048 14 C -0.255 4.255 15 C 0.126 3.874 16 O -0.235 6.235 17 C -0.416 4.416 18 H 0.106 0.894 19 C -0.026 4.026 20 N -0.924 5.924 21 Si 1.023 2.977 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.253 1.253 25 C -0.210 4.210 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.385 0.615 36 H 0.430 0.570 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.123 0.877 40 H 0.272 0.728 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.404 13.665 8.698 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.218 4.218 4 C -0.213 4.213 5 C 0.048 3.952 6 H 0.173 0.827 7 O -0.351 6.351 8 C 0.267 3.733 9 O -0.438 6.438 10 N -0.301 5.301 11 C 0.088 3.912 12 C -0.226 4.226 13 C -0.067 4.067 14 C -0.275 4.275 15 C 0.075 3.925 16 O -0.141 6.141 17 C -0.492 4.492 18 H 0.123 0.877 19 C -0.223 4.223 20 N -0.562 5.562 21 Si 0.841 3.159 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.177 1.177 25 C -0.231 4.231 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.235 0.765 36 H 0.272 0.728 37 H 0.182 0.818 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.463 12.824 8.785 21.925 hybrid contribution 1.119 -0.674 -1.084 1.697 sum -14.344 12.150 7.701 20.315 Atomic orbital electron populations 1.21735 0.90970 1.02682 1.03213 1.21140 0.98454 0.96550 0.92456 1.22167 1.01132 0.93607 1.04873 1.22010 0.99466 1.01001 0.98822 1.22211 0.84462 0.86297 1.02187 0.82679 1.86522 1.73422 1.24909 1.50258 1.22620 0.92249 0.83654 0.74818 1.90810 1.75934 1.28789 1.48289 1.43657 1.03882 1.12561 1.69970 1.17349 0.83780 0.96435 0.93641 1.20927 0.92693 1.05579 1.03372 1.21056 0.95238 0.95321 0.95039 1.21335 1.00173 1.02975 1.03016 1.19671 0.93152 0.89824 0.89892 1.83953 1.24596 1.55073 1.50514 1.21865 0.79182 1.30919 1.17221 0.87722 1.26694 1.06476 0.94981 0.94107 1.70211 1.38600 1.29674 1.17675 0.84600 0.73012 0.79395 0.78868 1.18172 1.19681 1.17656 1.19987 0.92034 1.06757 1.04357 0.90668 0.91238 0.92528 0.93092 0.90421 0.88876 0.92377 0.90410 0.95641 0.76468 0.72816 0.81788 0.82206 0.85892 0.91861 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.27 71.98 0.60 -0.95 16 2 C -0.09 -1.36 0.63 -52.18 -0.03 -1.39 16 3 C -0.16 -1.95 7.31 71.98 0.53 -1.43 16 4 C -0.16 -3.42 7.94 71.98 0.57 -2.85 16 5 C 0.11 2.21 2.77 29.85 0.08 2.30 16 6 H 0.16 2.04 8.14 -2.39 -0.02 2.02 16 7 O -0.55 -12.96 12.12 -130.13 -1.58 -14.54 16 8 C 0.48 14.25 5.22 87.66 0.46 14.71 16 9 O -0.56 -23.77 14.10 15.79 0.22 -23.55 16 10 N -0.65 -17.03 4.09 -303.55 -1.24 -18.27 16 11 C 0.18 6.51 6.24 38.14 0.24 6.74 16 12 C -0.21 -6.07 9.96 22.42 0.22 -5.85 16 13 C -0.05 -1.58 10.03 22.23 0.22 -1.36 16 14 C -0.26 -11.30 9.14 22.41 0.20 -11.09 16 15 C 0.13 6.71 6.64 22.56 0.15 6.86 16 16 O -0.23 -15.10 9.76 -22.72 -0.22 -15.32 16 17 C -0.42 -25.24 9.46 67.92 0.64 -24.59 16 18 H 0.11 5.73 5.26 -2.91 -0.02 5.72 16 19 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 20 N -0.92 -59.11 13.67 21.61 0.30 -58.81 16 21 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 25 C -0.21 -10.11 8.60 22.51 0.19 -9.92 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.79 7.54 -2.39 -0.02 0.78 16 29 H 0.05 0.82 5.80 -2.38 -0.01 0.81 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 1.26 6.90 -2.39 -0.02 1.24 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.02 0.74 7.06 -2.39 -0.02 0.72 16 35 H 0.39 9.01 7.24 -74.06 -0.54 8.47 16 36 H 0.43 6.92 6.86 -92.71 -0.64 6.28 16 37 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 39 H 0.12 5.45 5.68 -2.91 -0.02 5.44 16 40 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.09 5.04 6.54 -2.91 -0.02 5.02 16 Total: -1.00 -85.07 334.49 3.94 -81.12 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.10 Total: 33.18 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.54 Total: -29.85 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -0.95 Total: -77.08 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -1.58 Total: -53.41 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -85.07 3.94 -81.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764849515.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.830 kcal (2) G-P(sol) polarization free energy of solvation -85.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds