Wall clock time and date at job start Tue Mar 31 2020 06:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36013 * 116.99718 * 2 1 4 4 C 1.38349 * 120.01082 * 359.97438 * 3 2 1 5 5 C 1.38598 * 120.38022 * 180.02562 * 4 3 2 6 6 C 1.37708 * 120.40307 * 359.95059 * 5 4 3 7 7 C 1.50705 * 119.99770 * 180.02562 * 6 5 4 8 8 C 1.39869 * 120.00969 * 0.02562 * 6 5 4 9 9 C 1.47303 * 120.19175 * 179.97438 * 8 6 5 10 10 O 1.21521 * 120.00092 * 89.99468 * 9 8 6 11 11 O 1.34765 * 119.99877 * 269.99817 * 9 8 6 12 12 C 1.45206 * 116.99970 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48494 * 109.47308 * 209.99919 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.39376 * 120.00811 * 180.18525 * 3 2 1 24 24 N 1.39073 * 120.19933 * 0.02562 * 23 3 2 25 25 H 1.08992 * 109.47788 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46457 * 60.00455 * 1 2 3 27 27 H 1.09004 * 109.46688 * 180.02562 * 1 2 3 28 28 H 1.07992 * 119.80989 * 359.97280 * 4 3 2 29 29 H 1.08001 * 119.80122 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46690 * 269.98293 * 7 6 5 31 31 H 1.08992 * 109.46929 * 29.97527 * 7 6 5 32 32 H 1.08999 * 109.47313 * 149.97810 * 7 6 5 33 33 H 1.09000 * 109.47070 * 300.00007 * 12 11 9 34 34 H 1.09001 * 109.46626 * 60.00025 * 12 11 9 35 35 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 36 36 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 37 37 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 38 38 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 39 39 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 40 40 H 0.97001 * 120.00101 * 180.25584 * 24 23 3 41 41 H 0.96999 * 120.00191 * 0.24903 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2932 2.3723 -0.0005 5 6 1.9143 3.6113 -0.0011 6 6 3.2884 3.7020 -0.0001 7 6 3.9543 5.0539 -0.0001 8 6 4.0662 2.5395 0.0010 9 6 5.5363 2.6318 0.0015 10 8 6.1424 2.6706 1.0541 11 8 6.2093 2.6732 -1.1654 12 6 7.6564 2.7647 -1.0889 13 6 8.2406 2.7997 -2.5025 14 6 9.7655 2.8955 -2.4220 15 6 10.3409 2.9306 -3.8144 16 1 9.6845 2.8892 -4.6711 17 6 11.7051 3.0166 -3.9946 18 7 12.5043 3.0676 -2.9513 19 14 12.4184 3.0594 -5.7205 20 1 12.5190 4.4680 -6.1797 21 1 13.7695 2.4435 -5.7131 22 1 11.5336 2.3008 -6.6407 23 6 3.4383 1.2851 -0.0039 24 7 4.2000 0.1216 -0.0083 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2149 2.3124 -0.0014 29 1 1.3171 4.5112 -0.0019 30 1 4.1159 5.3793 -1.0278 31 1 3.3159 5.7733 0.5126 32 1 4.9127 4.9869 0.5148 33 1 7.9354 3.6746 -0.5574 34 1 8.0475 1.8982 -0.5558 35 1 7.9616 1.8896 -3.0336 36 1 7.8495 3.6661 -3.0360 37 1 10.0448 3.8054 -1.8908 38 1 10.1563 2.0290 -1.8887 39 1 13.4640 3.1277 -3.0781 40 1 5.1685 0.1758 -0.0073 41 1 3.7629 -0.7443 -0.0124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767317916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:04 Heat of formation + Delta-G solvation = -117.015992 kcal Electronic energy + Delta-G solvation = -22867.607517 eV Core-core repulsion = 19326.232790 eV Total energy + Delta-G solvation = -3541.374728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89306 -39.80263 -37.76787 -36.28512 -35.17660 -33.97417 -32.06673 -31.61406 -29.55236 -28.37778 -27.07242 -26.11916 -24.34601 -22.90885 -21.58275 -20.67683 -20.30604 -18.46497 -17.82545 -17.20702 -16.76071 -16.35040 -16.01562 -15.93200 -15.82961 -15.22369 -14.47660 -14.35087 -14.21490 -13.88713 -13.57050 -13.39388 -12.83629 -12.68393 -12.19759 -12.17944 -12.09442 -11.92168 -11.75668 -11.47538 -11.36152 -10.96953 -10.72278 -10.67375 -10.63926 -10.39803 -10.38136 -9.72564 -9.51095 -9.16759 -8.69874 -8.38775 -7.52661 -6.03604 -4.06604 0.91332 1.33890 2.16628 2.75637 3.14989 3.31118 3.37296 3.40942 3.50230 3.59852 4.43155 4.52259 4.62300 4.76104 4.84375 4.93565 4.99396 5.13478 5.19810 5.27484 5.32381 5.53820 5.54872 5.56353 5.60831 5.70027 5.90742 5.99670 6.04270 6.32052 6.39644 6.52392 6.53752 6.81298 6.86627 6.97989 7.31445 7.51507 7.60144 7.71039 7.88545 7.94870 8.35963 8.99696 9.57734 11.07856 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.002776 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.293719 B =10084.418190 C =10426.835099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.040 3.960 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.026 4.026 7 C -0.123 4.123 8 C -0.162 4.162 9 C 0.517 3.483 10 O -0.500 6.500 11 O -0.349 6.349 12 C 0.064 3.936 13 C -0.108 4.108 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.246 3.754 24 N -0.859 5.859 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.401 0.599 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.074 -2.775 7.193 27.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.236 6.236 3 C -0.007 4.007 4 C -0.158 4.158 5 C -0.166 4.166 6 C -0.027 4.027 7 C -0.179 4.179 8 C -0.169 4.169 9 C 0.359 3.641 10 O -0.388 6.388 11 O -0.265 6.265 12 C -0.009 4.009 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.559 4.559 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.139 3.861 24 N -0.398 5.398 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.230 0.770 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -25.580 -2.940 7.536 26.829 hybrid contribution 0.577 -0.174 -0.788 0.992 sum -25.003 -3.113 6.748 26.084 Atomic orbital electron populations 1.23000 0.78296 1.03773 1.01241 1.85952 1.21297 1.26199 1.90120 1.18102 0.89649 0.85233 1.07765 1.21089 0.99770 0.91671 1.03231 1.20435 0.93061 0.97123 1.05993 1.19528 0.93142 0.93571 0.96410 1.20895 1.00834 0.92954 1.03251 1.18211 0.89591 0.92332 1.16752 1.20901 0.88125 0.72567 0.82505 1.90873 1.70045 1.44953 1.32918 1.86720 1.24095 1.82503 1.33154 1.23567 0.73687 1.02124 1.01477 1.21766 0.99177 1.02031 0.91631 1.19054 0.86856 0.97641 0.97741 1.21171 0.91769 1.50723 0.92267 0.92427 1.25030 0.97241 0.95212 0.96989 1.69965 1.03729 1.50387 1.29310 0.86546 0.78401 0.78223 0.84568 1.20599 1.21197 1.19807 1.16760 0.87636 0.86380 0.95356 1.42229 1.08724 1.05710 1.83103 0.92785 0.92705 0.88377 0.85041 0.85215 0.90073 0.90675 0.91458 0.91365 0.91491 0.92150 0.92071 0.96215 0.96240 0.92888 0.76993 0.76212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.14 9.74 -19.78 -0.19 -3.33 16 3 C 0.04 0.46 6.70 -39.12 -0.26 0.19 16 4 C -0.14 -1.31 9.03 -39.41 -0.36 -1.66 16 5 C -0.15 -1.45 9.67 -39.64 -0.38 -1.83 16 6 C -0.03 -0.31 5.91 -104.20 -0.62 -0.93 16 7 C -0.12 -1.35 9.62 36.01 0.35 -1.00 16 8 C -0.16 -2.33 5.76 -104.84 -0.60 -2.94 16 9 C 0.52 8.62 4.60 34.42 0.16 8.78 16 10 O -0.50 -9.44 16.90 -19.28 -0.33 -9.77 16 11 O -0.35 -6.12 10.23 -40.67 -0.42 -6.54 16 12 C 0.06 1.20 5.48 37.16 0.20 1.41 16 13 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.25 3.23 6.78 -83.39 -0.57 2.66 16 24 N -0.86 -10.04 8.99 32.65 0.29 -9.75 16 25 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 26 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.13 0.85 6.26 -52.49 -0.33 0.52 16 29 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 0.86 7.08 -51.93 -0.37 0.49 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.40 4.88 7.68 -40.82 -0.31 4.57 16 41 H 0.41 3.95 8.18 -40.82 -0.33 3.61 16 LS Contribution 350.26 15.07 5.28 5.28 Total: -1.00 -32.89 350.26 -7.34 -40.22 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.90 Total: 3.02 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.79 Total: -9.59 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 1.03 Total: -35.89 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.93 Total: -19.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.89 -7.34 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767317916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.793 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds