Wall clock time and date at job start Tue Mar 31 2020 06:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36013 * 116.99718 * 2 1 4 4 C 1.38349 * 120.01082 * 359.97438 * 3 2 1 5 5 C 1.38598 * 120.38022 * 180.02562 * 4 3 2 6 6 C 1.37708 * 120.40307 * 359.95059 * 5 4 3 7 7 C 1.50705 * 119.99770 * 180.02562 * 6 5 4 8 8 C 1.39869 * 120.00969 * 0.02562 * 6 5 4 9 9 C 1.47303 * 120.19175 * 179.97438 * 8 6 5 10 10 O 1.21521 * 120.00092 * 89.99468 * 9 8 6 11 11 O 1.34765 * 119.99877 * 269.99817 * 9 8 6 12 12 C 1.45206 * 116.99970 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48494 * 109.47308 * 209.99919 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.39376 * 120.00811 * 180.18525 * 3 2 1 24 24 N 1.39073 * 120.19933 * 0.02562 * 23 3 2 25 25 H 1.08992 * 109.47788 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46457 * 60.00455 * 1 2 3 27 27 H 1.09004 * 109.46688 * 180.02562 * 1 2 3 28 28 H 1.07992 * 119.80989 * 359.97280 * 4 3 2 29 29 H 1.08001 * 119.80122 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.46690 * 269.98293 * 7 6 5 31 31 H 1.08992 * 109.46929 * 29.97527 * 7 6 5 32 32 H 1.08999 * 109.47313 * 149.97810 * 7 6 5 33 33 H 1.09000 * 109.47070 * 300.00007 * 12 11 9 34 34 H 1.09001 * 109.46626 * 60.00025 * 12 11 9 35 35 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 36 36 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 37 37 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 38 38 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 39 39 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 40 40 H 0.97001 * 120.00101 * 180.25584 * 24 23 3 41 41 H 0.96999 * 120.00191 * 0.24903 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2932 2.3723 -0.0005 5 6 1.9143 3.6113 -0.0011 6 6 3.2884 3.7020 -0.0001 7 6 3.9543 5.0539 -0.0001 8 6 4.0662 2.5395 0.0010 9 6 5.5363 2.6318 0.0015 10 8 6.1424 2.6706 1.0541 11 8 6.2093 2.6732 -1.1654 12 6 7.6564 2.7647 -1.0889 13 6 8.2406 2.7997 -2.5025 14 6 9.7655 2.8955 -2.4220 15 6 10.3409 2.9306 -3.8144 16 1 9.6845 2.8892 -4.6711 17 6 11.7051 3.0166 -3.9946 18 7 12.5043 3.0676 -2.9513 19 14 12.4184 3.0594 -5.7205 20 1 12.5190 4.4680 -6.1797 21 1 13.7695 2.4435 -5.7131 22 1 11.5336 2.3008 -6.6407 23 6 3.4383 1.2851 -0.0039 24 7 4.2000 0.1216 -0.0083 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 0.2149 2.3124 -0.0014 29 1 1.3171 4.5112 -0.0019 30 1 4.1159 5.3793 -1.0278 31 1 3.3159 5.7733 0.5126 32 1 4.9127 4.9869 0.5148 33 1 7.9354 3.6746 -0.5574 34 1 8.0475 1.8982 -0.5558 35 1 7.9616 1.8896 -3.0336 36 1 7.8495 3.6661 -3.0360 37 1 10.0448 3.8054 -1.8908 38 1 10.1563 2.0290 -1.8887 39 1 13.4640 3.1277 -3.0781 40 1 5.1685 0.1758 -0.0073 41 1 3.7629 -0.7443 -0.0124 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767317916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:03 Heat of formation + Delta-G solvation = -137.374951 kcal Electronic energy + Delta-G solvation = -22868.490348 eV Core-core repulsion = 19326.232790 eV Total energy + Delta-G solvation = -3542.257559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.97257 -40.84608 -38.63463 -37.70237 -36.04409 -35.94377 -33.72718 -32.78209 -30.53137 -29.16707 -28.74844 -26.84186 -25.78591 -24.45393 -22.47867 -22.20003 -21.72283 -19.43254 -18.82131 -18.69969 -18.20433 -17.67085 -17.25148 -16.99622 -16.62924 -16.50086 -16.06911 -15.58944 -15.05483 -14.88745 -14.69670 -14.63341 -14.15565 -13.84765 -13.78766 -13.57731 -13.36983 -12.97077 -12.84223 -12.66702 -12.53309 -12.43135 -12.16518 -12.11756 -12.00475 -11.82731 -11.49502 -11.45976 -11.44993 -11.24844 -10.58111 -9.57920 -8.36994 -8.22594 -6.34211 0.02061 0.50084 0.87346 1.40845 1.42497 1.53048 1.57767 2.36772 2.41648 2.63941 2.72544 3.11246 3.55874 3.83657 3.90986 3.95165 4.01081 4.15723 4.30226 4.37417 4.44345 4.49275 4.50281 4.63064 4.72357 4.76313 4.81558 4.82542 4.92655 5.04099 5.10027 5.24286 5.30254 5.47138 5.53248 5.61882 5.68232 5.78849 6.05990 6.17906 6.51227 6.53382 6.68077 6.81414 7.35322 8.89646 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.002776 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.293719 B =10084.418190 C =10426.835099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.037 3.963 4 C -0.129 4.129 5 C -0.137 4.137 6 C -0.042 4.042 7 C -0.122 4.122 8 C -0.194 4.194 9 C 0.524 3.476 10 O -0.529 6.529 11 O -0.350 6.350 12 C 0.073 3.927 13 C -0.093 4.093 14 C 0.027 3.973 15 C -0.543 4.543 16 H 0.064 0.936 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.227 3.773 24 N -0.859 5.859 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H -0.002 1.002 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.395 0.605 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.926 -2.578 6.107 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C -0.011 4.011 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.043 4.043 7 C -0.178 4.178 8 C -0.201 4.201 9 C 0.369 3.631 10 O -0.419 6.419 11 O -0.266 6.266 12 C 0.000 4.000 13 C -0.130 4.130 14 C -0.010 4.010 15 C -0.581 4.581 16 H 0.082 0.918 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 C 0.119 3.881 24 N -0.398 5.398 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.185 0.815 29 H 0.181 0.819 30 H 0.102 0.898 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.223 0.777 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -28.475 -2.753 6.447 29.325 hybrid contribution 1.328 -0.272 -0.394 1.411 sum -27.147 -3.025 6.054 27.978 Atomic orbital electron populations 1.23337 0.76076 1.05500 1.02432 1.85947 1.23563 1.25595 1.89923 1.18241 0.89109 0.86516 1.07266 1.21529 1.01493 0.90734 1.01079 1.20824 0.92099 0.98702 1.04051 1.19791 0.94310 0.93137 0.97059 1.20918 1.00076 0.93368 1.03443 1.18280 0.87841 0.93991 1.19946 1.21400 0.89124 0.71054 0.81538 1.90845 1.70923 1.46402 1.33696 1.86709 1.23057 1.82733 1.34078 1.23242 0.74823 1.02009 0.99930 1.21458 0.95992 1.02497 0.93080 1.18928 0.90102 0.95520 0.96460 1.21610 0.92462 1.50684 0.93346 0.91755 1.26007 0.97722 0.94581 1.01564 1.70099 1.04152 1.51244 1.31862 0.85389 0.77584 0.78662 0.79079 1.19662 1.20760 1.18597 1.16994 0.88876 0.86094 0.96152 1.42223 1.08400 1.06020 1.83188 0.91460 0.91467 0.86630 0.81485 0.81875 0.89800 0.87832 0.94125 0.91695 0.91544 0.91578 0.91513 0.98410 0.98376 0.92648 0.77676 0.75340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.86 9.74 -93.70 -0.91 -6.77 16 3 C 0.04 0.76 6.70 22.57 0.15 0.91 16 4 C -0.13 -2.01 9.03 22.38 0.20 -1.81 16 5 C -0.14 -2.28 9.67 22.23 0.21 -2.07 16 6 C -0.04 -0.98 5.91 -19.59 -0.12 -1.10 16 7 C -0.12 -2.57 9.62 71.24 0.69 -1.89 16 8 C -0.19 -5.59 5.76 -20.00 -0.12 -5.71 16 9 C 0.52 18.08 4.60 70.21 0.32 18.40 16 10 O -0.53 -20.88 16.90 19.77 0.33 -20.54 16 11 O -0.35 -12.59 10.23 -56.76 -0.58 -13.17 16 12 C 0.07 2.83 5.48 71.98 0.39 3.23 16 13 C -0.09 -3.95 5.53 30.60 0.17 -3.78 16 14 C 0.03 1.44 4.97 29.85 0.15 1.59 16 15 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 16 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 17 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 18 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 19 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 C 0.23 5.86 6.78 38.76 0.26 6.12 16 24 N -0.86 -20.45 8.99 -50.61 -0.45 -20.90 16 25 H 0.07 0.38 7.66 -2.39 -0.02 0.37 16 26 H 0.07 0.40 7.66 -2.38 -0.02 0.38 16 27 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.17 1.34 6.26 -2.91 -0.02 1.32 16 29 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.04 1.06 7.08 -2.39 -0.02 1.04 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.40 10.09 7.68 -92.71 -0.71 9.38 16 41 H 0.42 8.10 8.18 -92.71 -0.76 7.34 16 Total: -1.00 -72.21 350.26 4.41 -67.80 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.41 Total: 19.30 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 4.13 Total: -15.18 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -0.17 Total: -77.73 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.16 Total: -40.48 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.21 4.41 -67.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767317916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.576 kcal (2) G-P(sol) polarization free energy of solvation -72.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds