Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00001 * 2 1 4 4 O 1.20823 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00092 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47387 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99883 * 270.41839 * 6 5 3 8 8 H 1.07995 * 119.99922 * 188.06955 * 7 6 5 9 9 C 1.38816 * 119.99667 * 8.06333 * 7 6 5 10 10 N 1.31616 * 120.00321 * 25.09910 * 9 7 6 11 11 Si 1.86804 * 119.99918 * 205.09112 * 9 7 6 12 12 H 1.48505 * 109.46880 * 90.00229 * 11 9 7 13 13 H 1.48493 * 109.47188 * 210.00418 * 11 9 7 14 14 H 1.48499 * 109.47084 * 330.00577 * 11 9 7 15 15 C 1.46502 * 120.00293 * 90.41256 * 6 5 3 16 16 C 1.50699 * 109.46966 * 270.00163 * 15 6 5 17 17 C 1.38285 * 119.94625 * 270.24826 * 16 15 6 18 18 C 1.38123 * 120.05818 * 180.25598 * 17 16 15 19 19 C 1.38752 * 119.94113 * 359.49681 * 18 17 16 20 20 O 1.35895 * 120.05619 * 180.27283 * 19 18 17 21 21 C 1.42897 * 116.99970 * 0.02562 * 20 19 18 22 22 C 1.38717 * 119.88897 * 0.25285 * 19 18 17 23 23 C 1.50702 * 120.02438 * 180.02562 * 22 19 18 24 24 C 1.38167 * 119.94389 * 0.02562 * 22 19 18 25 25 H 1.08999 * 109.46980 * 299.99637 * 1 2 3 26 26 H 1.08994 * 109.47137 * 60.00225 * 1 2 3 27 27 H 1.09009 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46956 * 59.99707 * 5 3 2 29 29 H 1.09003 * 109.47059 * 300.00253 * 5 3 2 30 30 H 0.96997 * 119.99960 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46692 * 150.00184 * 15 6 5 32 32 H 1.08998 * 109.46829 * 29.99964 * 15 6 5 33 33 H 1.08001 * 119.97031 * 0.03070 * 17 16 15 34 34 H 1.08000 * 120.03172 * 179.77111 * 18 17 16 35 35 H 1.09003 * 109.47571 * 60.00081 * 21 20 19 36 36 H 1.09005 * 109.47143 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47551 * 299.99940 * 21 20 19 38 38 H 1.09005 * 109.46973 * 90.00247 * 23 22 19 39 39 H 1.09000 * 109.46686 * 210.00069 * 23 22 19 40 40 H 1.08995 * 109.47670 * 329.99912 * 23 22 19 41 41 H 1.07997 * 119.97068 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1680 3.3390 -1.1846 8 1 4.5978 4.3297 -1.1898 9 6 3.8045 2.7338 -2.3798 10 7 2.8717 1.8052 -2.3903 11 14 4.6389 3.2374 -3.9734 12 1 5.8366 2.3878 -4.1950 13 1 3.6924 3.0633 -5.1043 14 1 5.0512 4.6614 -3.8877 15 6 4.1977 3.3793 1.2700 16 6 2.9093 4.0220 1.7149 17 6 2.6071 5.3110 1.3157 18 6 1.4293 5.9042 1.7264 19 6 0.5442 5.2019 2.5317 20 8 -0.6178 5.7813 2.9327 21 6 -0.8644 7.1164 2.4872 22 6 0.8473 3.9071 2.9266 23 6 -0.1120 3.1412 3.8008 24 6 2.0295 3.3203 2.5178 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 2.6175 1.3826 -3.2255 31 1 4.9597 4.1472 1.1363 32 1 4.5284 2.6670 2.0259 33 1 3.2942 5.8557 0.6851 34 1 1.1954 6.9123 1.4174 35 1 -0.8874 7.1376 1.3976 36 1 -1.8233 7.4583 2.8770 37 1 -0.0712 7.7719 2.8466 38 1 -0.8143 2.5910 3.1745 39 1 0.4442 2.4413 4.4243 40 1 -0.6599 3.8373 4.4359 41 1 2.2661 2.3124 2.8253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769465541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -66.123165 kcal Electronic energy + Delta-G solvation = -24917.006631 eV Core-core repulsion = 21377.838782 eV Total energy + Delta-G solvation = -3539.167849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.72176 -38.81482 -37.29620 -35.68577 -34.40617 -32.49862 -31.51249 -29.77925 -28.07694 -27.38928 -26.42436 -25.85113 -25.12200 -22.12989 -21.38349 -20.03734 -19.47854 -17.50672 -16.90511 -16.13338 -15.80884 -15.52267 -15.38690 -15.06550 -14.70608 -14.37513 -13.79268 -13.70255 -13.51179 -13.16987 -13.02930 -12.54870 -12.39551 -12.07974 -11.90875 -11.71740 -11.60505 -11.43643 -11.10254 -10.98700 -10.87257 -10.75268 -10.57230 -10.35599 -10.15272 -10.12758 -9.88519 -9.47787 -8.98547 -8.48497 -8.09187 -7.43259 -7.06510 -5.93819 -3.18876 2.04054 2.13655 3.35294 3.42441 3.44144 3.66143 3.99898 4.14867 4.36825 4.53851 5.19107 5.27213 5.30103 5.31851 5.40656 5.48933 5.57133 5.65660 5.84639 5.86911 5.93200 5.93253 6.01189 6.06806 6.16337 6.17260 6.27421 6.33585 6.37272 6.53525 6.74023 6.80316 6.98130 7.05915 7.10680 7.42684 7.44276 7.67556 7.89098 7.92662 8.14415 9.00645 9.50873 9.72010 10.10843 11.17004 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.006370 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.018070 B = 4394.456777 C = 5250.098137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.386 6.386 3 C 0.460 3.540 4 O -0.489 6.489 5 C 0.187 3.813 6 N -0.559 5.559 7 C -0.247 4.247 8 H 0.082 0.918 9 C 0.001 3.999 10 N -0.899 5.899 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.281 1.281 15 C 0.178 3.822 16 C -0.100 4.100 17 C -0.066 4.066 18 C -0.205 4.205 19 C 0.105 3.895 20 O -0.323 6.323 21 C 0.032 3.968 22 C -0.117 4.117 23 C -0.097 4.097 24 C -0.062 4.062 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.050 0.950 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 2.460 9.979 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.304 6.304 3 C 0.299 3.701 4 O -0.373 6.373 5 C 0.058 3.942 6 N -0.277 5.277 7 C -0.376 4.376 8 H 0.100 0.900 9 C -0.197 4.197 10 N -0.544 5.544 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.221 1.221 14 H -0.206 1.206 15 C 0.052 3.948 16 C -0.103 4.103 17 C -0.085 4.085 18 C -0.223 4.223 19 C 0.061 3.939 20 O -0.237 6.237 21 C -0.064 4.064 22 C -0.118 4.118 23 C -0.153 4.153 24 C -0.081 4.081 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.351 2.627 9.929 10.804 hybrid contribution -0.339 0.633 -1.496 1.660 sum -3.690 3.261 8.432 9.765 Atomic orbital electron populations 1.22789 0.80165 1.00950 1.01085 1.86540 1.20680 1.37162 1.86019 1.25444 0.93410 0.80327 0.70960 1.90528 1.66310 1.35977 1.44441 1.20536 0.85864 0.86471 1.01341 1.44502 1.74799 1.06976 1.01399 1.19305 1.34162 1.01382 0.82739 0.90039 1.24750 0.97460 0.99522 0.97988 1.69846 1.27882 1.30337 1.26360 0.86176 0.79027 0.78062 0.82888 1.21334 1.22066 1.20594 1.20043 0.91877 0.95078 0.87809 1.20754 1.00036 0.93758 0.95779 1.20633 0.95753 0.94962 0.97155 1.21016 0.97025 1.00472 1.03817 1.18614 0.85789 0.92711 0.96814 1.85973 1.37211 1.29208 1.71339 1.22909 1.01432 0.82130 0.99914 1.19006 0.97199 0.92359 1.03244 1.20502 0.97814 0.98993 0.98022 1.20459 0.92724 0.97951 0.96954 0.93787 0.93114 0.90462 0.86925 0.93216 0.93238 0.91934 0.93049 0.86676 0.86741 0.93019 0.89045 0.93196 0.92142 0.92409 0.91980 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.56 101.05 1.07 1.91 16 2 O -0.39 -8.53 10.57 -39.24 -0.41 -8.95 16 3 C 0.46 11.12 5.80 36.01 0.21 11.32 16 4 O -0.49 -13.12 13.22 -18.75 -0.25 -13.37 16 5 C 0.19 4.29 5.59 -5.19 -0.03 4.27 16 6 N -0.56 -13.11 2.07 -175.98 -0.36 -13.47 16 7 C -0.25 -6.41 9.70 -15.06 -0.15 -6.55 16 8 H 0.08 2.07 7.93 -52.49 -0.42 1.66 16 9 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 10 N -0.90 -25.12 8.94 55.49 0.50 -24.63 16 11 Si 0.91 21.32 29.62 -169.99 -5.04 16.28 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.18 3.51 5.83 -5.19 -0.03 3.48 16 16 C -0.10 -2.02 4.49 -104.60 -0.47 -2.49 16 17 C -0.07 -1.31 9.69 -39.61 -0.38 -1.69 16 18 C -0.20 -3.79 9.04 -39.43 -0.36 -4.14 16 19 C 0.11 1.97 6.66 -39.21 -0.26 1.71 16 20 O -0.32 -5.39 9.54 -19.41 -0.19 -5.57 16 21 C 0.03 0.39 9.81 101.05 0.99 1.38 16 22 C -0.12 -2.21 5.89 -104.47 -0.62 -2.82 16 23 C -0.10 -1.51 9.79 36.01 0.35 -1.16 16 24 C -0.06 -1.20 7.56 -39.61 -0.30 -1.50 16 25 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 26 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 27 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 28 H 0.11 2.80 6.30 -51.93 -0.33 2.47 16 29 H 0.05 0.97 7.89 -51.93 -0.41 0.56 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 32 H 0.05 0.89 7.83 -51.93 -0.41 0.48 16 33 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 34 H 0.11 1.83 6.30 -52.49 -0.33 1.49 16 35 H 0.05 0.64 7.66 -51.93 -0.40 0.25 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 41 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -31.83 340.89 -6.68 -38.50 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.00 Total: 2.43 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.06 Total: 3.64 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.13 Total: -38.10 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.85 Total: -27.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.04 Total: 16.28 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.83 -6.68 -38.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769465541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.621 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds