Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34224 * 117.00001 * 2 1 4 4 O 1.20823 * 120.00048 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00092 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47387 * 180.02562 * 5 3 2 7 7 C 1.36939 * 119.99883 * 270.41839 * 6 5 3 8 8 H 1.07995 * 119.99922 * 188.06955 * 7 6 5 9 9 C 1.38816 * 119.99667 * 8.06333 * 7 6 5 10 10 N 1.31616 * 120.00321 * 25.09910 * 9 7 6 11 11 Si 1.86804 * 119.99918 * 205.09112 * 9 7 6 12 12 H 1.48505 * 109.46880 * 90.00229 * 11 9 7 13 13 H 1.48493 * 109.47188 * 210.00418 * 11 9 7 14 14 H 1.48499 * 109.47084 * 330.00577 * 11 9 7 15 15 C 1.46502 * 120.00293 * 90.41256 * 6 5 3 16 16 C 1.50699 * 109.46966 * 270.00163 * 15 6 5 17 17 C 1.38285 * 119.94625 * 270.24826 * 16 15 6 18 18 C 1.38123 * 120.05818 * 180.25598 * 17 16 15 19 19 C 1.38752 * 119.94113 * 359.49681 * 18 17 16 20 20 O 1.35895 * 120.05619 * 180.27283 * 19 18 17 21 21 C 1.42897 * 116.99970 * 0.02562 * 20 19 18 22 22 C 1.38717 * 119.88897 * 0.25285 * 19 18 17 23 23 C 1.50702 * 120.02438 * 180.02562 * 22 19 18 24 24 C 1.38167 * 119.94389 * 0.02562 * 22 19 18 25 25 H 1.08999 * 109.46980 * 299.99637 * 1 2 3 26 26 H 1.08994 * 109.47137 * 60.00225 * 1 2 3 27 27 H 1.09009 * 109.47138 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46956 * 59.99707 * 5 3 2 29 29 H 1.09003 * 109.47059 * 300.00253 * 5 3 2 30 30 H 0.96997 * 119.99960 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.46692 * 150.00184 * 15 6 5 32 32 H 1.08998 * 109.46829 * 29.99964 * 15 6 5 33 33 H 1.08001 * 119.97031 * 0.03070 * 17 16 15 34 34 H 1.08000 * 120.03172 * 179.77111 * 18 17 16 35 35 H 1.09003 * 109.47571 * 60.00081 * 21 20 19 36 36 H 1.09005 * 109.47143 * 179.97438 * 21 20 19 37 37 H 1.09000 * 109.47551 * 299.99940 * 21 20 19 38 38 H 1.09005 * 109.46973 * 90.00247 * 23 22 19 39 39 H 1.09000 * 109.46686 * 210.00069 * 23 22 19 40 40 H 1.08995 * 109.47670 * 329.99912 * 23 22 19 41 41 H 1.07997 * 119.97068 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.1680 3.3390 -1.1846 8 1 4.5978 4.3297 -1.1898 9 6 3.8045 2.7338 -2.3798 10 7 2.8717 1.8052 -2.3903 11 14 4.6389 3.2374 -3.9734 12 1 5.8366 2.3878 -4.1950 13 1 3.6924 3.0633 -5.1043 14 1 5.0512 4.6614 -3.8877 15 6 4.1977 3.3793 1.2700 16 6 2.9093 4.0220 1.7149 17 6 2.6071 5.3110 1.3157 18 6 1.4293 5.9042 1.7264 19 6 0.5442 5.2019 2.5317 20 8 -0.6178 5.7813 2.9327 21 6 -0.8644 7.1164 2.4872 22 6 0.8473 3.9071 2.9266 23 6 -0.1120 3.1412 3.8008 24 6 2.0295 3.3203 2.5178 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 2.6175 1.3826 -3.2255 31 1 4.9597 4.1472 1.1363 32 1 4.5284 2.6670 2.0259 33 1 3.2942 5.8557 0.6851 34 1 1.1954 6.9123 1.4174 35 1 -0.8874 7.1376 1.3976 36 1 -1.8233 7.4583 2.8770 37 1 -0.0712 7.7719 2.8466 38 1 -0.8143 2.5910 3.1745 39 1 0.4442 2.4413 4.4243 40 1 -0.6599 3.8373 4.4359 41 1 2.2661 2.3124 2.8253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769465541.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -83.442357 kcal Electronic energy + Delta-G solvation = -24917.757648 eV Core-core repulsion = 21377.838782 eV Total energy + Delta-G solvation = -3539.918866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10511 -40.58179 -38.72853 -37.36124 -36.24447 -34.01877 -33.20138 -31.37612 -29.74890 -28.52698 -27.84681 -27.53893 -26.67112 -23.86070 -22.78791 -21.66995 -21.12999 -18.86885 -18.73078 -17.94054 -17.28536 -17.16110 -16.82444 -16.60497 -16.46008 -15.87434 -15.49583 -15.23422 -14.99924 -14.60874 -14.34397 -14.00623 -13.94921 -13.79746 -13.40661 -13.13284 -12.97304 -12.85341 -12.73064 -12.64840 -12.45119 -12.33092 -12.17610 -11.97961 -11.92693 -11.67063 -11.51663 -11.23949 -10.85679 -10.43105 -9.54002 -9.09245 -8.71557 -7.92749 -5.17661 0.58371 0.67825 1.48783 1.51310 1.58022 2.18748 2.41548 2.47055 2.60902 2.94552 3.29036 3.75211 3.94671 3.97891 4.21938 4.32407 4.36972 4.42160 4.48511 4.49440 4.52775 4.58292 4.63981 4.69674 4.71872 4.79099 4.82054 4.87016 4.94637 5.05629 5.13171 5.25603 5.40183 5.54139 5.62952 5.66466 5.94639 6.03279 6.10401 6.23112 6.58391 7.05742 7.64364 7.86700 8.19274 9.15957 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.006370 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.018070 B = 4394.456777 C = 5250.098137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.391 6.391 3 C 0.462 3.538 4 O -0.520 6.520 5 C 0.186 3.814 6 N -0.569 5.569 7 C -0.245 4.245 8 H 0.081 0.919 9 C -0.050 4.050 10 N -0.925 5.925 11 Si 0.965 3.035 12 H -0.281 1.281 13 H -0.309 1.309 14 H -0.274 1.274 15 C 0.176 3.824 16 C -0.115 4.115 17 C -0.086 4.086 18 C -0.212 4.212 19 C 0.099 3.901 20 O -0.333 6.333 21 C 0.022 3.978 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.069 4.069 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.246 0.754 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.047 0.953 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 2.672 11.233 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.309 6.309 3 C 0.303 3.697 4 O -0.406 6.406 5 C 0.056 3.944 6 N -0.288 5.288 7 C -0.374 4.374 8 H 0.099 0.901 9 C -0.244 4.244 10 N -0.572 5.572 11 Si 0.795 3.205 12 H -0.208 1.208 13 H -0.236 1.236 14 H -0.200 1.200 15 C 0.051 3.949 16 C -0.118 4.118 17 C -0.105 4.105 18 C -0.230 4.230 19 C 0.054 3.946 20 O -0.247 6.247 21 C -0.072 4.072 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.087 4.087 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.139 0.861 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.066 0.934 36 H 0.141 0.859 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.608 2.850 11.214 12.120 hybrid contribution -0.344 0.621 -1.785 1.921 sum -3.952 3.471 9.430 10.798 Atomic orbital electron populations 1.23026 0.78143 1.03605 1.00226 1.86501 1.22647 1.36134 1.85595 1.25591 0.93861 0.80286 0.69961 1.90507 1.67095 1.37037 1.46003 1.20530 0.85400 0.86536 1.01890 1.44577 1.74902 1.07329 1.01959 1.19533 1.32860 1.01157 0.83893 0.90108 1.25361 0.98294 1.00332 1.00434 1.70001 1.29391 1.31880 1.25966 0.85291 0.77792 0.77987 0.79464 1.20794 1.23634 1.19953 1.20206 0.92045 0.95752 0.86892 1.20797 1.00245 0.94148 0.96608 1.20804 0.96550 0.95391 0.97729 1.21265 0.96598 1.01519 1.03643 1.18814 0.86357 0.92987 0.96427 1.85960 1.36143 1.31234 1.71358 1.23236 1.03629 0.80392 0.99963 1.19428 0.97578 0.92911 1.03503 1.20505 0.97332 0.99195 0.97762 1.20592 0.92969 0.98206 0.96976 0.93297 0.95306 0.86062 0.89116 0.89668 0.94394 0.91192 0.90453 0.86787 0.84688 0.93418 0.85900 0.91824 0.92666 0.90508 0.91055 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 10.56 113.37 1.20 2.79 16 2 O -0.39 -16.97 10.57 -51.36 -0.54 -17.51 16 3 C 0.46 22.23 5.80 71.24 0.41 22.64 16 4 O -0.52 -27.99 13.22 21.97 0.29 -27.70 16 5 C 0.19 8.42 5.59 85.63 0.48 8.90 16 6 N -0.57 -26.41 2.07 -710.68 -1.47 -27.87 16 7 C -0.24 -12.67 9.70 84.03 0.82 -11.85 16 8 H 0.08 4.10 7.93 -2.91 -0.02 4.08 16 9 C -0.05 -2.66 4.90 84.86 0.42 -2.25 16 10 N -0.93 -52.54 8.94 21.65 0.19 -52.35 16 11 Si 0.96 44.37 29.62 68.60 2.03 46.40 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.18 6.74 5.83 85.63 0.50 7.24 16 16 C -0.12 -4.56 4.49 -19.85 -0.09 -4.65 16 17 C -0.09 -3.38 9.69 22.25 0.22 -3.16 16 18 C -0.21 -7.67 9.04 22.37 0.20 -7.47 16 19 C 0.10 3.59 6.66 22.51 0.15 3.74 16 20 O -0.33 -10.51 9.54 -92.37 -0.88 -11.40 16 21 C 0.02 0.50 9.81 113.37 1.11 1.61 16 22 C -0.13 -4.86 5.89 -19.77 -0.12 -4.98 16 23 C -0.09 -2.70 9.79 71.24 0.70 -2.00 16 24 C -0.07 -2.59 7.56 22.25 0.17 -2.42 16 25 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 26 H 0.03 1.14 8.13 -2.39 -0.02 1.12 16 27 H 0.12 3.23 8.14 -2.38 -0.02 3.21 16 28 H 0.09 4.54 6.30 -2.39 -0.02 4.53 16 29 H 0.09 3.18 7.89 -2.39 -0.02 3.16 16 30 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.07 2.53 7.97 -2.39 -0.02 2.51 16 32 H 0.08 2.51 7.83 -2.39 -0.02 2.50 16 33 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 34 H 0.14 4.14 6.30 -2.91 -0.02 4.12 16 35 H 0.05 1.11 7.66 -2.39 -0.02 1.09 16 36 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 38 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.08 1.93 8.09 -2.39 -0.02 1.91 16 40 H 0.07 1.94 7.53 -2.39 -0.02 1.93 16 41 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -68.22 340.89 6.80 -61.42 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 1.02 Total: 20.88 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.16 Total: 8.13 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.28 Total: -80.22 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -1.13 Total: -56.61 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.22 6.80 -61.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769465541.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.026 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds