Wall clock time and date at job start Tue Mar 31 2020 07:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00258 * 2 1 4 4 H 1.08998 * 109.47097 * 12.35409 * 3 2 1 5 5 C 1.50705 * 109.47421 * 132.35542 * 3 2 1 6 6 O 1.21285 * 119.99916 * 5.82159 * 5 3 2 7 7 N 1.34773 * 120.00069 * 185.81918 * 5 3 2 8 8 C 1.39929 * 119.99862 * 184.85044 * 7 5 3 9 9 C 1.38959 * 120.03325 * 33.70148 * 8 7 5 10 10 C 1.38163 * 120.05971 * 179.71849 * 9 8 7 11 11 C 1.38164 * 120.14277 * 0.55796 * 10 9 8 12 12 C 1.38918 * 120.06963 * 359.72062 * 11 10 9 13 13 O 1.35745 * 120.03000 * 179.97438 * 12 11 10 14 14 C 1.34836 * 116.99898 * 185.65434 * 13 12 11 15 15 H 1.08005 * 119.99435 * 5.61062 * 14 13 12 16 16 C 1.38652 * 120.00363 * 185.60469 * 14 13 12 17 17 N 1.31559 * 119.99727 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47057 * 90.00689 * 18 16 14 20 20 H 1.48498 * 109.47013 * 210.00600 * 18 16 14 21 21 H 1.48498 * 109.46974 * 330.00304 * 18 16 14 22 22 C 1.38713 * 120.03232 * 213.97587 * 8 7 5 23 23 C 1.52999 * 109.47301 * 252.35339 * 3 2 1 24 24 C 1.53007 * 109.47216 * 304.34971 * 23 3 2 25 25 C 1.53009 * 109.46927 * 64.34701 * 23 3 2 26 26 H 1.09001 * 109.47498 * 174.91395 * 1 2 3 27 27 H 1.09008 * 109.46842 * 54.91600 * 1 2 3 28 28 H 1.09001 * 109.47446 * 294.92215 * 1 2 3 29 29 H 0.97003 * 120.00154 * 4.85985 * 7 5 3 30 30 H 1.07994 * 119.96791 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.92509 * 180.25542 * 10 9 8 32 32 H 1.07997 * 119.96538 * 179.74580 * 11 10 9 33 33 H 0.96999 * 119.99553 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.07266 * 359.97438 * 22 8 7 35 35 H 1.09003 * 109.47664 * 184.34494 * 23 3 2 36 36 H 1.09004 * 109.46818 * 64.36620 * 24 23 3 37 37 H 1.08998 * 109.46704 * 184.36668 * 24 23 3 38 38 H 1.08998 * 109.46465 * 304.36822 * 24 23 3 39 39 H 1.09000 * 109.46839 * 295.16338 * 25 23 3 40 40 H 1.08996 * 109.47054 * 55.16302 * 25 23 3 41 41 H 1.09004 * 109.47034 * 175.16469 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2409 2.0456 0.2199 5 6 3.0890 1.3750 1.0500 6 8 3.4087 0.3755 1.6581 7 7 3.6986 2.5478 1.3131 8 6 4.7685 2.5936 2.2138 9 6 5.6462 1.5202 2.3062 10 6 6.7062 1.5672 3.1912 11 6 6.8904 2.6759 3.9949 12 6 6.0131 3.7497 3.9112 13 8 6.1945 4.8383 4.7016 14 6 5.2436 5.7933 4.6559 15 1 4.3437 5.6320 4.0809 16 6 5.4212 6.9821 5.3470 17 7 6.5176 7.1785 6.0470 18 14 4.1035 8.3047 5.2841 19 1 3.1373 8.0938 6.3919 20 1 4.7360 9.6406 5.4266 21 1 3.3899 8.2310 3.9840 22 6 4.9508 3.7081 3.0193 23 6 2.6171 1.5934 -1.3746 24 6 3.6192 0.4933 -1.7304 25 6 1.5055 1.6300 -2.4254 26 1 -0.3634 -1.0236 -0.0911 27 1 -0.3633 0.5907 -0.8410 28 1 -0.3634 0.4330 0.9320 29 1 3.3956 3.3602 0.8783 30 1 5.5020 0.6502 1.6828 31 1 7.3894 0.7335 3.2583 32 1 7.7175 2.7079 4.6885 33 1 6.6419 8.0104 6.5302 34 1 4.2677 4.5418 2.9521 35 1 3.1275 2.5564 -1.3520 36 1 3.0952 -0.4574 -1.8292 37 1 4.1083 0.7384 -2.6732 38 1 4.3680 0.4153 -0.9421 39 1 1.0519 0.6424 -2.5089 40 1 0.7473 2.3540 -2.1272 41 1 1.9255 1.9195 -3.3887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769869754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:57 Heat of formation + Delta-G solvation = -85.258456 kcal Electronic energy + Delta-G solvation = -23503.416550 eV Core-core repulsion = 19963.418933 eV Total energy + Delta-G solvation = -3539.997618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55255 -39.00290 -37.93277 -36.29239 -34.99725 -34.07968 -32.24975 -29.73126 -28.91066 -28.02164 -27.28695 -26.00646 -25.26546 -22.33753 -21.81570 -20.93273 -19.82821 -18.09356 -17.92290 -17.07768 -16.76821 -16.08499 -15.34485 -15.16854 -15.00439 -14.62770 -14.29633 -14.15449 -14.00163 -13.71503 -13.57153 -13.19698 -12.98948 -12.64867 -12.39354 -12.30918 -11.84560 -11.75185 -11.59401 -11.50660 -11.31486 -11.10994 -11.03231 -10.97657 -10.73221 -10.46142 -10.19607 -9.79903 -9.52417 -9.24193 -8.81259 -7.73999 -7.16254 -6.46161 -4.05972 1.94469 2.36918 2.82038 2.90013 3.10309 3.11421 3.15476 3.77413 3.94461 4.41060 4.46626 4.56225 4.66614 4.85356 4.95448 5.09594 5.11822 5.15613 5.27059 5.32657 5.42767 5.45077 5.56619 5.68587 5.71635 5.80929 5.96605 6.00627 6.06240 6.19462 6.23898 6.27490 6.62214 6.76273 6.98003 6.99689 7.12362 7.30964 7.41355 7.68762 7.80391 7.98133 8.30879 8.99226 9.69913 10.71957 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.003811 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.803167 B = 7345.733118 C = 8251.256752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.078 3.922 4 H 0.088 0.912 5 C 0.505 3.495 6 O -0.498 6.498 7 N -0.668 5.668 8 C 0.181 3.819 9 C -0.205 4.205 10 C -0.063 4.063 11 C -0.200 4.200 12 C 0.168 3.832 13 O -0.176 6.176 14 C -0.392 4.392 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.256 4.256 23 C -0.105 4.105 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.405 0.595 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.270 0.730 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 -8.334 -15.545 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.268 6.268 3 C 0.016 3.984 4 H 0.106 0.894 5 C 0.290 3.710 6 O -0.371 6.371 7 N -0.315 5.315 8 C 0.088 3.912 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.220 4.220 12 C 0.114 3.886 13 O -0.080 6.080 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.164 4.164 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.193 1.193 22 C -0.278 4.278 23 C -0.124 4.124 24 C -0.200 4.200 25 C -0.204 4.204 26 H 0.108 0.892 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.240 0.760 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.178 -9.023 -14.835 20.127 hybrid contribution -1.146 1.419 -0.220 1.838 sum -11.324 -7.603 -15.055 20.315 Atomic orbital electron populations 1.22974 0.80883 1.03154 1.00137 1.88027 1.19433 1.24755 1.94607 1.22058 0.95036 0.87396 0.93950 0.89436 1.20679 0.83147 0.83482 0.83663 1.90737 1.62896 1.34595 1.48867 1.43465 1.33168 1.10477 1.44374 1.17390 0.87137 0.95617 0.91011 1.20544 0.97159 0.99537 1.05310 1.20536 0.96423 0.96504 0.94721 1.20255 1.02615 0.93715 1.05367 1.19081 0.92226 0.88456 0.88835 1.84021 1.45120 1.24743 1.54076 1.21266 0.97855 0.94899 1.32855 0.89291 1.25272 0.97829 0.97406 0.95943 1.70037 1.25167 1.25798 1.28687 0.85730 0.79432 0.79389 0.78948 1.19899 1.20238 1.19322 1.20812 1.04278 1.00614 1.02070 1.21514 0.97455 1.00481 0.92997 1.21733 0.98437 0.98566 1.01299 1.21867 0.97872 1.02180 0.98500 0.89234 0.93650 0.93872 0.75989 0.86351 0.86585 0.86360 0.92011 0.85260 0.89749 0.91596 0.92579 0.92420 0.91941 0.92696 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.39 101.05 1.05 1.26 16 2 O -0.35 -4.27 8.77 -55.07 -0.48 -4.76 16 3 C 0.08 0.86 2.35 -27.88 -0.07 0.79 16 4 H 0.09 0.76 7.64 -51.93 -0.40 0.36 16 5 C 0.50 7.72 5.79 -10.98 -0.06 7.65 16 6 O -0.50 -9.72 14.20 -14.29 -0.20 -9.93 16 7 N -0.67 -10.09 5.26 -9.88 -0.05 -10.14 16 8 C 0.18 3.49 6.27 -83.72 -0.52 2.96 16 9 C -0.20 -3.99 8.66 -39.34 -0.34 -4.33 16 10 C -0.06 -1.21 10.03 -39.64 -0.40 -1.60 16 11 C -0.20 -4.32 9.99 -39.36 -0.39 -4.71 16 12 C 0.17 4.08 6.64 -39.13 -0.26 3.82 16 13 O -0.18 -5.01 9.76 0.05 0.00 -5.01 16 14 C -0.39 -10.84 9.44 30.89 0.29 -10.55 16 15 H 0.09 2.26 5.29 -52.48 -0.28 1.98 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 18 Si 0.94 20.17 29.55 -169.99 -5.02 15.15 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.26 -5.54 9.05 -39.21 -0.35 -5.90 16 23 C -0.11 -0.96 2.74 -90.61 -0.25 -1.21 16 24 C -0.14 -1.50 8.81 37.16 0.33 -1.17 16 25 C -0.15 -1.03 8.20 37.16 0.30 -0.72 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.28 6.85 -51.92 -0.36 -0.07 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.41 4.72 8.77 -40.82 -0.36 4.36 16 30 H 0.12 2.28 6.42 -52.49 -0.34 1.94 16 31 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 2.73 5.71 -52.49 -0.30 2.43 16 35 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.74 7.22 -51.93 -0.37 0.36 16 39 H 0.06 0.45 7.22 -51.93 -0.38 0.08 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -33.69 342.40 -6.30 -39.99 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.69 Total: 6.59 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.77 Total: -12.72 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.71 Total: -34.48 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.69 Total: -19.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.69 -6.30 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769869754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.268 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds