Wall clock time and date at job start Tue Mar 31 2020 07:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00258 * 2 1 4 4 H 1.08998 * 109.47097 * 12.35409 * 3 2 1 5 5 C 1.50705 * 109.47421 * 132.35542 * 3 2 1 6 6 O 1.21285 * 119.99916 * 5.82159 * 5 3 2 7 7 N 1.34773 * 120.00069 * 185.81918 * 5 3 2 8 8 C 1.39929 * 119.99862 * 184.85044 * 7 5 3 9 9 C 1.38959 * 120.03325 * 33.70148 * 8 7 5 10 10 C 1.38163 * 120.05971 * 179.71849 * 9 8 7 11 11 C 1.38164 * 120.14277 * 0.55796 * 10 9 8 12 12 C 1.38918 * 120.06963 * 359.72062 * 11 10 9 13 13 O 1.35745 * 120.03000 * 179.97438 * 12 11 10 14 14 C 1.34836 * 116.99898 * 185.65434 * 13 12 11 15 15 H 1.08005 * 119.99435 * 5.61062 * 14 13 12 16 16 C 1.38652 * 120.00363 * 185.60469 * 14 13 12 17 17 N 1.31559 * 119.99727 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47057 * 90.00689 * 18 16 14 20 20 H 1.48498 * 109.47013 * 210.00600 * 18 16 14 21 21 H 1.48498 * 109.46974 * 330.00304 * 18 16 14 22 22 C 1.38713 * 120.03232 * 213.97587 * 8 7 5 23 23 C 1.52999 * 109.47301 * 252.35339 * 3 2 1 24 24 C 1.53007 * 109.47216 * 304.34971 * 23 3 2 25 25 C 1.53009 * 109.46927 * 64.34701 * 23 3 2 26 26 H 1.09001 * 109.47498 * 174.91395 * 1 2 3 27 27 H 1.09008 * 109.46842 * 54.91600 * 1 2 3 28 28 H 1.09001 * 109.47446 * 294.92215 * 1 2 3 29 29 H 0.97003 * 120.00154 * 4.85985 * 7 5 3 30 30 H 1.07994 * 119.96791 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.92509 * 180.25542 * 10 9 8 32 32 H 1.07997 * 119.96538 * 179.74580 * 11 10 9 33 33 H 0.96999 * 119.99553 * 179.97438 * 17 16 14 34 34 H 1.07995 * 120.07266 * 359.97438 * 22 8 7 35 35 H 1.09003 * 109.47664 * 184.34494 * 23 3 2 36 36 H 1.09004 * 109.46818 * 64.36620 * 24 23 3 37 37 H 1.08998 * 109.46704 * 184.36668 * 24 23 3 38 38 H 1.08998 * 109.46465 * 304.36822 * 24 23 3 39 39 H 1.09000 * 109.46839 * 295.16338 * 25 23 3 40 40 H 1.08996 * 109.47054 * 55.16302 * 25 23 3 41 41 H 1.09004 * 109.47034 * 175.16469 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2409 2.0456 0.2199 5 6 3.0890 1.3750 1.0500 6 8 3.4087 0.3755 1.6581 7 7 3.6986 2.5478 1.3131 8 6 4.7685 2.5936 2.2138 9 6 5.6462 1.5202 2.3062 10 6 6.7062 1.5672 3.1912 11 6 6.8904 2.6759 3.9949 12 6 6.0131 3.7497 3.9112 13 8 6.1945 4.8383 4.7016 14 6 5.2436 5.7933 4.6559 15 1 4.3437 5.6320 4.0809 16 6 5.4212 6.9821 5.3470 17 7 6.5176 7.1785 6.0470 18 14 4.1035 8.3047 5.2841 19 1 3.1373 8.0938 6.3919 20 1 4.7360 9.6406 5.4266 21 1 3.3899 8.2310 3.9840 22 6 4.9508 3.7081 3.0193 23 6 2.6171 1.5934 -1.3746 24 6 3.6192 0.4933 -1.7304 25 6 1.5055 1.6300 -2.4254 26 1 -0.3634 -1.0236 -0.0911 27 1 -0.3633 0.5907 -0.8410 28 1 -0.3634 0.4330 0.9320 29 1 3.3956 3.3602 0.8783 30 1 5.5020 0.6502 1.6828 31 1 7.3894 0.7335 3.2583 32 1 7.7175 2.7079 4.6885 33 1 6.6419 8.0104 6.5302 34 1 4.2677 4.5418 2.9521 35 1 3.1275 2.5564 -1.3520 36 1 3.0952 -0.4574 -1.8292 37 1 4.1083 0.7384 -2.6732 38 1 4.3680 0.4153 -0.9421 39 1 1.0519 0.6424 -2.5089 40 1 0.7473 2.3540 -2.1272 41 1 1.9255 1.9195 -3.3887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769869754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:57 Heat of formation + Delta-G solvation = -107.462801 kcal Electronic energy + Delta-G solvation = -23504.379403 eV Core-core repulsion = 19963.418933 eV Total energy + Delta-G solvation = -3540.960470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81435 -40.57692 -39.14109 -37.91822 -35.96884 -35.32585 -34.22830 -31.20234 -30.51178 -29.01486 -28.06369 -27.32962 -26.70547 -23.70648 -23.50543 -22.03690 -21.02421 -19.78347 -19.45118 -18.41884 -17.79956 -17.19760 -16.80673 -16.64512 -16.34909 -15.99832 -15.70372 -15.59175 -15.39637 -14.92093 -14.65952 -14.49154 -14.24755 -14.00438 -13.55560 -13.42255 -13.24396 -12.96406 -12.76937 -12.73443 -12.49730 -12.39524 -12.24255 -12.10514 -12.03141 -11.69367 -11.50254 -11.26028 -11.10556 -10.74210 -10.35981 -9.37814 -8.89911 -8.46204 -6.15339 0.36467 0.67436 1.36651 1.45058 1.53957 1.54676 1.77763 2.18492 2.82572 2.91858 3.16122 3.47142 3.50514 3.66526 3.84595 4.10390 4.15429 4.28966 4.30762 4.42570 4.50397 4.54611 4.61780 4.66368 4.71329 4.82480 4.85713 4.93351 5.00736 5.00848 5.10702 5.15285 5.35903 5.36909 5.41886 5.44603 5.64661 5.65559 6.01411 6.01901 6.16958 6.44383 6.97963 7.07920 7.77159 8.76830 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.003811 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.803167 B = 7345.733118 C = 8251.256752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.379 6.379 3 C 0.084 3.916 4 H 0.119 0.881 5 C 0.503 3.497 6 O -0.545 6.545 7 N -0.658 5.658 8 C 0.188 3.812 9 C -0.201 4.201 10 C -0.052 4.052 11 C -0.213 4.213 12 C 0.135 3.865 13 O -0.226 6.226 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.021 4.021 17 N -0.920 5.920 18 Si 1.018 2.982 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.248 1.248 22 C -0.258 4.258 23 C -0.102 4.102 24 C -0.142 4.142 25 C -0.142 4.142 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.424 0.576 30 H 0.126 0.874 31 H 0.153 0.847 32 H 0.120 0.880 33 H 0.273 0.727 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.027 0.973 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -8.371 -18.029 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.296 6.296 3 C 0.022 3.978 4 H 0.136 0.864 5 C 0.291 3.709 6 O -0.420 6.420 7 N -0.306 5.306 8 C 0.094 3.906 9 C -0.222 4.222 10 C -0.071 4.071 11 C -0.233 4.233 12 C 0.084 3.916 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.120 0.880 16 C -0.219 4.219 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.171 1.171 22 C -0.280 4.280 23 C -0.121 4.121 24 C -0.199 4.199 25 C -0.199 4.199 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.715 -9.086 -17.380 23.373 hybrid contribution -0.361 1.131 0.421 1.260 sum -13.076 -7.955 -16.959 22.845 Atomic orbital electron populations 1.23189 0.78980 1.04383 1.01197 1.88002 1.21582 1.25413 1.94640 1.22149 0.94322 0.88097 0.93210 0.86356 1.21617 0.83300 0.82362 0.83583 1.90710 1.64535 1.36095 1.50699 1.43443 1.31994 1.11771 1.43373 1.17427 0.87939 0.94466 0.90804 1.20828 0.96876 0.99600 1.04871 1.20907 0.96573 0.96449 0.93141 1.20475 1.02612 0.93998 1.06217 1.19591 0.93985 0.88301 0.89726 1.83988 1.46422 1.26274 1.56492 1.21812 0.98549 0.95290 1.33388 0.87950 1.26597 1.00451 0.99740 0.95102 1.70189 1.27990 1.26900 1.30669 0.84592 0.76150 0.75577 0.79937 1.19134 1.19711 1.17089 1.20845 1.03615 1.01514 1.01996 1.21564 0.97914 1.00279 0.92380 1.21718 0.98156 0.99027 1.01030 1.21839 0.97373 1.02665 0.98055 0.88388 0.91135 0.93892 0.73800 0.85657 0.82981 0.86217 0.91813 0.85014 0.88553 0.92363 0.91019 0.95331 0.92180 0.90944 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.39 113.37 1.18 1.43 16 2 O -0.38 -8.40 8.77 -130.01 -1.14 -9.54 16 3 C 0.08 1.63 2.35 29.85 0.07 1.70 16 4 H 0.12 1.57 7.64 -2.39 -0.02 1.55 16 5 C 0.50 14.52 5.79 87.66 0.51 15.03 16 6 O -0.54 -20.83 14.20 15.93 0.23 -20.60 16 7 N -0.66 -18.61 5.26 -303.55 -1.60 -20.21 16 8 C 0.19 7.05 6.27 38.13 0.24 7.29 16 9 C -0.20 -7.61 8.66 22.42 0.19 -7.42 16 10 C -0.05 -1.94 10.03 22.23 0.22 -1.72 16 11 C -0.21 -9.37 9.99 22.41 0.22 -9.15 16 12 C 0.14 6.77 6.64 22.56 0.15 6.92 16 13 O -0.23 -13.43 9.76 -22.75 -0.22 -13.65 16 14 C -0.41 -23.58 9.44 67.92 0.64 -22.94 16 15 H 0.10 5.27 5.29 -2.91 -0.02 5.25 16 16 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 17 N -0.92 -55.71 13.67 21.61 0.30 -55.42 16 18 Si 1.02 41.45 29.55 68.60 2.03 43.47 16 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 22 C -0.26 -11.19 9.05 22.51 0.20 -10.99 16 23 C -0.10 -1.55 2.74 -10.79 -0.03 -1.58 16 24 C -0.14 -2.73 8.81 71.98 0.63 -2.09 16 25 C -0.14 -1.42 8.20 71.99 0.59 -0.83 16 26 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 0.61 6.85 -2.38 -0.02 0.60 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.42 8.75 8.77 -92.71 -0.81 7.94 16 30 H 0.13 4.66 6.42 -2.91 -0.02 4.64 16 31 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.13 5.54 5.71 -2.91 -0.02 5.53 16 35 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 36 H 0.06 1.19 7.72 -2.38 -0.02 1.17 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.03 0.70 7.22 -2.39 -0.02 0.68 16 39 H 0.06 0.65 7.22 -2.39 -0.02 0.63 16 40 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -77.22 342.40 5.12 -72.11 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.24 Total: 28.91 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 5.29 Total: -25.07 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.30 Total: -75.63 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.14 Total: -43.80 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -77.22 5.12 -72.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769869754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.357 kcal (2) G-P(sol) polarization free energy of solvation -77.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds