Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99567 * 2 1 4 4 H 1.08997 * 109.48085 * 30.00223 * 3 2 1 5 5 C 1.50701 * 109.47274 * 269.99680 * 3 2 1 6 6 O 1.21286 * 120.00042 * 355.00622 * 5 3 2 7 7 N 1.34782 * 120.00287 * 175.00236 * 5 3 2 8 8 C 1.39926 * 120.00171 * 174.78868 * 7 5 3 9 9 C 1.38968 * 120.03496 * 326.16672 * 8 7 5 10 10 C 1.38151 * 120.05972 * 179.76611 * 9 8 7 11 11 C 1.38171 * 120.14636 * 0.50677 * 10 9 8 12 12 C 1.38913 * 120.06216 * 359.74339 * 11 10 9 13 13 O 1.35757 * 120.02490 * 179.97438 * 12 11 10 14 14 C 1.34829 * 116.99391 * 185.92873 * 13 12 11 15 15 H 1.07998 * 120.00820 * 5.40656 * 14 13 12 16 16 C 1.38659 * 119.99886 * 185.41055 * 14 13 12 17 17 N 1.31563 * 119.99668 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00139 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46867 * 89.99892 * 18 16 14 20 20 H 1.48503 * 109.47157 * 209.99580 * 18 16 14 21 21 H 1.48491 * 109.47292 * 330.00058 * 18 16 14 22 22 C 1.38713 * 120.03207 * 146.43668 * 8 7 5 23 23 C 1.52999 * 109.47081 * 150.00209 * 3 2 1 24 24 C 1.53000 * 109.46834 * 299.99988 * 23 3 2 25 25 C 1.53004 * 109.47433 * 59.99605 * 23 3 2 26 26 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47358 * 300.00360 * 1 2 3 28 28 H 1.09003 * 109.46936 * 60.00134 * 1 2 3 29 29 H 0.96996 * 119.99429 * 354.79439 * 7 5 3 30 30 H 1.07993 * 119.96428 * 359.97438 * 9 8 7 31 31 H 1.08006 * 119.92889 * 180.23077 * 10 9 8 32 32 H 1.07993 * 119.96912 * 179.76510 * 11 10 9 33 33 H 0.97003 * 119.99572 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.06802 * 359.95775 * 22 8 7 35 35 H 1.08992 * 109.47490 * 179.97438 * 23 3 2 36 36 H 1.09002 * 109.47392 * 59.99731 * 24 23 3 37 37 H 1.09003 * 109.47239 * 179.97438 * 24 23 3 38 38 H 1.09000 * 109.47070 * 299.99774 * 24 23 3 39 39 H 1.09003 * 109.47134 * 59.99934 * 25 23 3 40 40 H 1.08989 * 109.47511 * 180.02562 * 25 23 3 41 41 H 1.09003 * 109.47163 * 300.00842 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6588 3.0125 -1.6686 8 6 2.9526 3.4032 -2.9797 9 6 3.4708 2.4808 -3.8808 10 6 3.7565 2.8648 -5.1768 11 6 3.5380 4.1687 -5.5783 12 6 3.0251 5.0966 -4.6808 13 8 2.8112 6.3776 -5.0760 14 6 2.4292 7.2553 -4.1265 15 1 2.3909 6.9488 -3.0916 16 6 2.0854 8.5516 -4.4786 17 7 2.1325 8.9252 -5.7392 18 14 1.5555 9.7675 -3.1633 19 1 2.7467 10.4884 -2.6468 20 1 0.6008 10.7437 -3.7472 21 1 0.8978 9.0371 -2.0501 22 6 2.7321 4.7130 -3.3798 23 6 3.3588 1.2634 0.7212 24 6 3.1514 0.7974 2.1637 25 6 4.2927 0.2893 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.7750 3.6399 -0.9380 30 1 3.6472 1.4622 -3.5685 31 1 4.1557 2.1453 -5.8764 32 1 3.7659 4.4666 -6.5910 33 1 1.8917 9.8320 -5.9856 34 1 2.3329 5.4325 -2.6803 35 1 3.8024 2.2590 0.7208 36 1 2.7081 -0.1984 2.1637 37 1 4.1123 0.7669 2.6774 38 1 2.4861 1.4913 2.6775 39 1 4.4405 0.6212 -1.0277 40 1 5.2533 0.2590 0.5140 41 1 3.8494 -0.7065 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769869760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -87.049202 kcal Electronic energy + Delta-G solvation = -23560.296232 eV Core-core repulsion = 20020.220962 eV Total energy + Delta-G solvation = -3540.075270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58755 -38.98340 -37.78463 -36.26615 -35.19538 -34.09085 -32.25566 -29.67567 -28.85634 -27.76048 -27.31404 -26.15959 -25.27619 -22.34306 -21.82392 -20.91383 -19.79908 -18.10610 -17.93366 -17.10463 -16.76495 -16.01890 -15.31358 -15.12340 -14.98104 -14.68114 -14.26774 -14.17095 -13.95052 -13.71247 -13.60148 -13.19506 -12.99625 -12.63495 -12.36115 -12.26084 -11.87003 -11.77548 -11.56791 -11.35391 -11.18313 -11.07261 -10.99114 -10.89901 -10.83403 -10.52013 -10.47532 -9.77161 -9.57471 -9.16182 -8.82567 -7.74963 -7.17170 -6.46843 -4.06671 1.93211 2.35721 2.80630 3.06096 3.09807 3.10596 3.15014 3.60132 3.93700 4.45721 4.48792 4.56075 4.69837 4.85435 5.04352 5.08320 5.18710 5.24037 5.26349 5.38420 5.50229 5.54178 5.62625 5.68964 5.74140 5.82129 5.97266 6.05013 6.06357 6.21069 6.23245 6.26546 6.61510 6.76271 6.97211 6.98301 7.10983 7.29969 7.40384 7.67691 7.79480 7.97192 8.29100 8.98438 9.69095 10.71256 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003854 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.357548 B = 7263.581468 C = 8057.561584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.078 3.922 4 H 0.086 0.914 5 C 0.488 3.512 6 O -0.504 6.504 7 N -0.669 5.669 8 C 0.181 3.819 9 C -0.205 4.205 10 C -0.063 4.063 11 C -0.200 4.200 12 C 0.168 3.832 13 O -0.176 6.176 14 C -0.393 4.393 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.256 4.256 23 C -0.087 4.087 24 C -0.144 4.144 25 C -0.147 4.147 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.405 0.595 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.270 0.730 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 -13.015 15.079 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.016 3.984 4 H 0.103 0.897 5 C 0.274 3.726 6 O -0.377 6.377 7 N -0.315 5.315 8 C 0.088 3.912 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.220 4.220 12 C 0.114 3.886 13 O -0.080 6.080 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.497 5.497 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.193 1.193 22 C -0.278 4.278 23 C -0.106 4.106 24 C -0.201 4.201 25 C -0.204 4.204 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.240 0.760 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.147 0.853 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.417 -13.466 14.105 19.506 hybrid contribution -0.577 1.269 1.010 1.721 sum -0.160 -12.197 15.115 19.423 Atomic orbital electron populations 1.22878 0.80698 1.03183 1.00123 1.87968 1.19898 1.24638 1.94324 1.22128 0.97206 0.87002 0.92016 0.89661 1.21396 0.77145 0.81739 0.92303 1.90732 1.47927 1.53327 1.45697 1.43563 1.65630 1.13993 1.08322 1.17412 0.96823 0.93355 0.83646 1.20528 1.08330 0.99379 0.94329 1.20534 0.97873 0.94684 0.95088 1.20253 1.09101 0.92753 0.99891 1.19081 0.92090 0.85981 0.91442 1.84024 1.74455 1.12993 1.36486 1.21263 1.46720 0.90526 0.88388 0.89288 1.25279 0.96688 0.97088 0.97414 1.70040 1.44601 1.19004 1.16019 0.85730 0.78696 0.79668 0.79403 1.19861 1.20241 1.19335 1.20812 1.13112 0.95700 0.98175 1.21225 0.92580 1.01076 0.95673 1.21782 1.01879 1.02169 0.94259 1.21790 0.98456 0.99995 1.00159 0.89231 0.94006 0.93532 0.76019 0.86424 0.86614 0.86369 0.92003 0.85282 0.89554 0.91567 0.92167 0.92741 0.92510 0.92405 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.81 101.05 1.09 1.36 16 2 O -0.35 -4.24 8.54 -55.09 -0.47 -4.71 16 3 C 0.08 0.87 2.26 -27.88 -0.06 0.80 16 4 H 0.09 0.75 7.79 -51.93 -0.40 0.34 16 5 C 0.49 7.31 5.60 -10.98 -0.06 7.25 16 6 O -0.50 -9.55 14.22 -14.31 -0.20 -9.75 16 7 N -0.67 -10.02 5.30 -9.88 -0.05 -10.07 16 8 C 0.18 3.46 6.27 -83.72 -0.52 2.93 16 9 C -0.20 -3.98 8.65 -39.34 -0.34 -4.32 16 10 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 11 C -0.20 -4.32 9.99 -39.36 -0.39 -4.72 16 12 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 13 O -0.18 -5.00 9.76 0.03 0.00 -5.00 16 14 C -0.39 -10.81 9.44 30.89 0.29 -10.52 16 15 H 0.09 2.24 5.30 -52.49 -0.28 1.96 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.09 13.67 55.48 0.76 -24.33 16 18 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 C -0.26 -5.53 9.04 -39.21 -0.35 -5.89 16 23 C -0.09 -0.80 2.77 -90.62 -0.25 -1.05 16 24 C -0.14 -1.07 9.05 37.16 0.34 -0.73 16 25 C -0.15 -1.55 8.80 37.16 0.33 -1.22 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.40 4.70 8.78 -40.82 -0.36 4.34 16 30 H 0.12 2.25 6.45 -52.49 -0.34 1.91 16 31 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 32 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.13 2.72 5.72 -52.49 -0.30 2.42 16 35 H 0.09 0.69 8.11 -51.93 -0.42 0.27 16 36 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.72 7.22 -51.93 -0.37 0.34 16 40 H 0.06 0.51 8.14 -51.94 -0.42 0.09 16 41 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 LS Contribution 345.15 15.07 5.20 5.20 Total: -1.00 -33.27 345.15 -6.27 -39.55 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.79 Total: 6.91 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.70 Total: -12.88 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.71 Total: -34.40 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.67 Total: -19.46 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.27 -6.27 -39.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769869760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.504 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds