Wall clock time and date at job start Tue Mar 31 2020 07:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99567 * 2 1 4 4 H 1.08997 * 109.48085 * 30.00223 * 3 2 1 5 5 C 1.50701 * 109.47274 * 269.99680 * 3 2 1 6 6 O 1.21286 * 120.00042 * 355.00622 * 5 3 2 7 7 N 1.34782 * 120.00287 * 175.00236 * 5 3 2 8 8 C 1.39926 * 120.00171 * 174.78868 * 7 5 3 9 9 C 1.38968 * 120.03496 * 326.16672 * 8 7 5 10 10 C 1.38151 * 120.05972 * 179.76611 * 9 8 7 11 11 C 1.38171 * 120.14636 * 0.50677 * 10 9 8 12 12 C 1.38913 * 120.06216 * 359.74339 * 11 10 9 13 13 O 1.35757 * 120.02490 * 179.97438 * 12 11 10 14 14 C 1.34829 * 116.99391 * 185.92873 * 13 12 11 15 15 H 1.07998 * 120.00820 * 5.40656 * 14 13 12 16 16 C 1.38659 * 119.99886 * 185.41055 * 14 13 12 17 17 N 1.31563 * 119.99668 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00139 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46867 * 89.99892 * 18 16 14 20 20 H 1.48503 * 109.47157 * 209.99580 * 18 16 14 21 21 H 1.48491 * 109.47292 * 330.00058 * 18 16 14 22 22 C 1.38713 * 120.03207 * 146.43668 * 8 7 5 23 23 C 1.52999 * 109.47081 * 150.00209 * 3 2 1 24 24 C 1.53000 * 109.46834 * 299.99988 * 23 3 2 25 25 C 1.53004 * 109.47433 * 59.99605 * 23 3 2 26 26 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47358 * 300.00360 * 1 2 3 28 28 H 1.09003 * 109.46936 * 60.00134 * 1 2 3 29 29 H 0.96996 * 119.99429 * 354.79439 * 7 5 3 30 30 H 1.07993 * 119.96428 * 359.97438 * 9 8 7 31 31 H 1.08006 * 119.92889 * 180.23077 * 10 9 8 32 32 H 1.07993 * 119.96912 * 179.76510 * 11 10 9 33 33 H 0.97003 * 119.99572 * 179.97438 * 17 16 14 34 34 H 1.07999 * 120.06802 * 359.95775 * 22 8 7 35 35 H 1.08992 * 109.47490 * 179.97438 * 23 3 2 36 36 H 1.09002 * 109.47392 * 59.99731 * 24 23 3 37 37 H 1.09003 * 109.47239 * 179.97438 * 24 23 3 38 38 H 1.09000 * 109.47070 * 299.99774 * 24 23 3 39 39 H 1.09003 * 109.47134 * 59.99934 * 25 23 3 40 40 H 1.08989 * 109.47511 * 180.02562 * 25 23 3 41 41 H 1.09003 * 109.47163 * 300.00842 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7644 -1.4208 6 8 1.9791 1.0106 -2.3414 7 7 2.6588 3.0125 -1.6686 8 6 2.9526 3.4032 -2.9797 9 6 3.4708 2.4808 -3.8808 10 6 3.7565 2.8648 -5.1768 11 6 3.5380 4.1687 -5.5783 12 6 3.0251 5.0966 -4.6808 13 8 2.8112 6.3776 -5.0760 14 6 2.4292 7.2553 -4.1265 15 1 2.3909 6.9488 -3.0916 16 6 2.0854 8.5516 -4.4786 17 7 2.1325 8.9252 -5.7392 18 14 1.5555 9.7675 -3.1633 19 1 2.7467 10.4884 -2.6468 20 1 0.6008 10.7437 -3.7472 21 1 0.8978 9.0371 -2.0501 22 6 2.7321 4.7130 -3.3798 23 6 3.3588 1.2634 0.7212 24 6 3.1514 0.7974 2.1637 25 6 4.2927 0.2893 0.0000 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 2.7750 3.6399 -0.9380 30 1 3.6472 1.4622 -3.5685 31 1 4.1557 2.1453 -5.8764 32 1 3.7659 4.4666 -6.5910 33 1 1.8917 9.8320 -5.9856 34 1 2.3329 5.4325 -2.6803 35 1 3.8024 2.2590 0.7208 36 1 2.7081 -0.1984 2.1637 37 1 4.1123 0.7669 2.6774 38 1 2.4861 1.4913 2.6775 39 1 4.4405 0.6212 -1.0277 40 1 5.2533 0.2590 0.5140 41 1 3.8494 -0.7065 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769869760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:59 Heat of formation + Delta-G solvation = -108.737183 kcal Electronic energy + Delta-G solvation = -23561.236694 eV Core-core repulsion = 20020.220962 eV Total energy + Delta-G solvation = -3541.015732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.84204 -40.58848 -39.02603 -37.85244 -36.11678 -35.39515 -34.22876 -31.18106 -30.48313 -28.77543 -28.03396 -27.38400 -26.91756 -23.70979 -23.50701 -22.04094 -20.98470 -19.78533 -19.44782 -18.47739 -17.80913 -17.18377 -16.81109 -16.65413 -16.25383 -16.02597 -15.69004 -15.55063 -15.44970 -14.93460 -14.69824 -14.53431 -14.26060 -13.99065 -13.56926 -13.42321 -13.24078 -12.93800 -12.77312 -12.65783 -12.56196 -12.49164 -12.13817 -12.11524 -11.79504 -11.69257 -11.54829 -11.41299 -11.26573 -10.75037 -10.33809 -9.38186 -8.90047 -8.46374 -6.15449 0.36119 0.66911 1.36583 1.44963 1.53958 1.54333 1.89465 2.18351 2.74586 2.82865 3.15907 3.46781 3.50573 3.69443 3.85262 4.10163 4.14235 4.30004 4.33266 4.42084 4.46914 4.51167 4.61551 4.65506 4.71617 4.82454 4.85503 4.94255 5.00576 5.04252 5.10568 5.15738 5.35662 5.37974 5.44483 5.48393 5.64286 5.65125 5.95745 6.01095 6.15766 6.43709 6.97784 7.07444 7.77003 8.76713 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.003854 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.357548 B = 7263.581468 C = 8057.561584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.083 3.917 4 H 0.117 0.883 5 C 0.488 3.512 6 O -0.547 6.547 7 N -0.659 5.659 8 C 0.188 3.812 9 C -0.201 4.201 10 C -0.052 4.052 11 C -0.214 4.214 12 C 0.135 3.865 13 O -0.226 6.226 14 C -0.414 4.414 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.019 2.981 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.250 1.250 22 C -0.259 4.259 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.145 4.145 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.423 0.577 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.273 0.727 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -13.906 18.461 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.285 6.285 3 C 0.022 3.978 4 H 0.135 0.865 5 C 0.276 3.724 6 O -0.423 6.423 7 N -0.307 5.307 8 C 0.093 3.907 9 C -0.221 4.221 10 C -0.071 4.071 11 C -0.234 4.234 12 C 0.084 3.916 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.122 0.878 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.838 3.162 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.173 1.173 22 C -0.280 4.280 23 C -0.104 4.104 24 C -0.195 4.195 25 C -0.203 4.203 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.294 -14.406 17.542 22.702 hybrid contribution -0.477 1.224 -0.034 1.315 sum -0.183 -13.182 17.508 21.916 Atomic orbital electron populations 1.23030 0.79683 1.04219 1.00393 1.87966 1.21130 1.25259 1.94100 1.22303 0.98999 0.87319 0.89209 0.86525 1.22303 0.75477 0.80780 0.93804 1.90709 1.49736 1.54353 1.47466 1.43551 1.65178 1.14756 1.07186 1.17447 0.95392 0.92269 0.85549 1.20808 1.07135 0.99661 0.94523 1.20903 0.96383 0.94119 0.95689 1.20471 1.09507 0.93502 0.99897 1.19593 0.93336 0.85440 0.93231 1.83992 1.76752 1.14729 1.37762 1.21829 1.46864 0.91147 0.89181 0.87802 1.26615 0.96358 0.98951 1.00054 1.70195 1.47079 1.19784 1.18762 0.84583 0.78566 0.76623 0.76426 1.18680 1.19947 1.17306 1.20844 1.13090 0.96788 0.97287 1.21316 0.91051 1.01633 0.96364 1.21743 1.02894 1.02017 0.92875 1.21774 0.99779 0.99684 0.99046 0.88052 0.91244 0.95589 0.73854 0.85693 0.83040 0.86271 0.91836 0.85054 0.87890 0.92398 0.91033 0.91131 0.95109 0.90692 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.81 113.37 1.23 1.62 16 2 O -0.37 -8.07 8.54 -129.99 -1.11 -9.18 16 3 C 0.08 1.60 2.26 29.85 0.07 1.67 16 4 H 0.12 1.55 7.79 -2.39 -0.02 1.53 16 5 C 0.49 13.71 5.60 87.66 0.49 14.21 16 6 O -0.55 -20.21 14.22 15.94 0.23 -19.98 16 7 N -0.66 -18.39 5.30 -303.54 -1.61 -19.99 16 8 C 0.19 6.98 6.27 38.14 0.24 7.22 16 9 C -0.20 -7.52 8.65 22.42 0.19 -7.33 16 10 C -0.05 -1.94 10.03 22.23 0.22 -1.72 16 11 C -0.21 -9.38 9.99 22.42 0.22 -9.16 16 12 C 0.14 6.75 6.64 22.56 0.15 6.90 16 13 O -0.23 -13.45 9.76 -22.81 -0.22 -13.67 16 14 C -0.41 -23.48 9.44 67.92 0.64 -22.84 16 15 H 0.10 5.29 5.30 -2.91 -0.02 5.27 16 16 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 17 N -0.92 -55.79 13.67 21.62 0.30 -55.49 16 18 Si 1.02 41.33 29.55 68.60 2.03 43.36 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 22 C -0.26 -11.16 9.04 22.51 0.20 -10.95 16 23 C -0.09 -1.29 2.77 -10.79 -0.03 -1.32 16 24 C -0.14 -1.53 9.05 71.98 0.65 -0.88 16 25 C -0.15 -2.79 8.80 71.98 0.63 -2.16 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.42 8.63 8.78 -92.71 -0.81 7.82 16 30 H 0.13 4.60 6.45 -2.91 -0.02 4.58 16 31 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.13 5.51 5.72 -2.91 -0.02 5.49 16 35 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16 36 H 0.06 0.76 7.68 -2.39 -0.02 0.74 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.03 0.73 7.22 -2.39 -0.02 0.72 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 Total: -1.00 -76.17 345.15 5.22 -70.95 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.23 Total: 29.50 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 5.38 Total: -25.50 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -1.31 Total: -75.49 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -1.11 Total: -42.83 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -76.17 5.22 -70.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769869760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.782 kcal (2) G-P(sol) polarization free energy of solvation -76.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds