Wall clock time and date at job start Tue Mar 31 2020 07:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.53008 * 109.46851 * 119.99963 * 2 1 3 5 5 C 1.52994 * 109.47077 * 61.36642 * 4 2 1 6 6 O 1.42900 * 109.47054 * 301.36522 * 4 2 1 7 7 C 1.50695 * 109.46762 * 181.36594 * 4 2 1 8 8 O 1.21285 * 120.00148 * 333.07846 * 7 4 2 9 9 N 1.34781 * 120.00133 * 153.35369 * 7 4 2 10 10 C 1.39916 * 120.00431 * 174.69736 * 9 7 4 11 11 C 1.38967 * 120.03534 * 328.27588 * 10 9 7 12 12 C 1.38162 * 120.06853 * 179.76756 * 11 10 9 13 13 C 1.38173 * 120.13261 * 0.50677 * 12 11 10 14 14 C 1.38902 * 120.07543 * 359.74272 * 13 12 11 15 15 O 1.35754 * 120.03710 * 179.97438 * 14 13 12 16 16 C 1.34825 * 117.00316 * 174.58014 * 15 14 13 17 17 H 1.08006 * 120.00347 * 5.11023 * 16 15 14 18 18 C 1.38650 * 120.00209 * 185.11338 * 16 15 14 19 19 N 1.31559 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00104 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46878 * 60.00387 * 20 18 16 22 22 H 1.48500 * 109.46814 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47335 * 299.99946 * 20 18 16 24 24 C 1.38716 * 120.03659 * 148.54585 * 10 9 7 25 25 H 1.08998 * 109.47383 * 64.45120 * 1 2 3 26 26 H 1.08995 * 109.47380 * 184.45410 * 1 2 3 27 27 H 1.08998 * 109.47329 * 304.45455 * 1 2 3 28 28 H 1.08995 * 109.47184 * 239.99682 * 2 1 3 29 29 H 1.09000 * 109.46542 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47040 * 299.99751 * 3 2 1 31 31 H 1.09001 * 109.47329 * 60.00251 * 3 2 1 32 32 H 1.09000 * 109.46820 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46993 * 299.99575 * 5 4 2 34 34 H 1.08999 * 109.47553 * 59.99831 * 5 4 2 35 35 H 0.96709 * 114.00039 * 300.00276 * 6 4 2 36 36 H 0.96998 * 119.99612 * 354.69754 * 9 7 4 37 37 H 1.07994 * 119.96616 * 359.97438 * 11 10 9 38 38 H 1.07995 * 119.93504 * 180.23128 * 12 11 10 39 39 H 1.08008 * 119.95931 * 179.72421 * 13 12 11 40 40 H 0.96999 * 120.00018 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.06963 * 359.96234 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5582 -2.1733 1.2322 6 8 1.5376 -0.0664 2.4158 7 6 3.5465 -0.6920 1.2664 8 8 4.1634 -0.6154 0.2249 9 7 4.2086 -0.7566 2.4386 10 6 5.6052 -0.8414 2.4496 11 6 6.2706 -1.4940 1.4188 12 6 7.6498 -1.5740 1.4265 13 6 8.3713 -1.0148 2.4638 14 6 7.7118 -0.3655 3.4996 15 8 8.4214 0.1832 4.5186 16 6 7.7306 0.8946 5.4321 17 1 6.6527 0.9383 5.3800 18 6 8.4039 1.5701 6.4385 19 7 9.7169 1.5173 6.5017 20 14 7.4467 2.5563 7.7037 21 1 6.5191 1.6560 8.4345 22 1 8.3924 3.1780 8.6652 23 1 6.6680 3.6184 7.0176 24 6 6.3268 -0.2789 3.4922 25 1 -0.3634 0.4432 -0.9271 26 1 -0.3634 -1.0245 0.0798 27 1 -0.3634 0.5814 0.8474 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.9219 -2.6872 2.1220 33 1 0.4685 -2.1944 1.2199 34 1 1.9414 -2.6729 0.3424 35 1 1.8041 0.8601 2.4924 36 1 3.7169 -0.7442 3.2746 37 1 5.7091 -1.9363 0.6092 38 1 8.1649 -2.0785 0.6224 39 1 9.4492 -1.0828 2.4692 40 1 10.1879 1.9896 7.2059 41 1 5.8118 0.2256 4.2963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771193431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:40 Heat of formation + Delta-G solvation = -92.883818 kcal Electronic energy + Delta-G solvation = -23764.964364 eV Core-core repulsion = 20224.636086 eV Total energy + Delta-G solvation = -3540.328278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87321 -39.04370 -37.75162 -36.36173 -34.63418 -33.73499 -32.25409 -30.87986 -29.34139 -28.60437 -27.40346 -25.37806 -24.57464 -22.51958 -21.84193 -20.51565 -19.78838 -18.50686 -17.90387 -17.27903 -16.56859 -15.70175 -15.41920 -15.06698 -14.86400 -14.79845 -14.24840 -14.04833 -13.64145 -13.36768 -13.23949 -13.02116 -12.74077 -12.60938 -12.46061 -12.33219 -12.16788 -11.91320 -11.77617 -11.59129 -11.25797 -11.08555 -11.05588 -11.00353 -10.80924 -10.53045 -10.48875 -9.84396 -9.55217 -9.25419 -8.81871 -7.75062 -7.17990 -6.46303 -4.06394 1.88449 2.34211 2.76434 3.09655 3.11022 3.12993 3.15127 3.84496 3.94661 4.31780 4.48529 4.60258 4.61278 4.93843 5.06859 5.12934 5.23229 5.27704 5.39779 5.45342 5.49868 5.60949 5.66449 5.69718 5.79029 5.93238 5.95981 6.03809 6.10325 6.11157 6.22656 6.25036 6.60108 6.89822 6.96113 7.07602 7.19420 7.28470 7.40250 7.67997 7.78410 7.97628 8.23588 8.98879 9.68776 10.71627 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.004086 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.325866 B = 6850.879246 C = 7898.942490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.159 4.159 4 C 0.126 3.874 5 C -0.140 4.140 6 O -0.549 6.549 7 C 0.487 3.513 8 O -0.513 6.513 9 N -0.660 5.660 10 C 0.178 3.822 11 C -0.208 4.208 12 C -0.063 4.063 13 C -0.201 4.201 14 C 0.169 3.831 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.090 0.910 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.257 4.257 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.381 0.619 36 H 0.411 0.589 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.129 -3.497 -9.236 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 C -0.216 4.216 4 C 0.082 3.918 5 C -0.197 4.197 6 O -0.356 6.356 7 C 0.273 3.727 8 O -0.388 6.388 9 N -0.305 5.305 10 C 0.085 3.915 11 C -0.229 4.229 12 C -0.082 4.082 13 C -0.220 4.220 14 C 0.115 3.885 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.107 0.893 18 C -0.164 4.164 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.279 4.279 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.230 0.770 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.567 -3.938 -9.670 19.582 hybrid contribution -0.451 1.134 1.019 1.590 sum -17.018 -2.803 -8.651 19.295 Atomic orbital electron populations 1.21825 0.93974 1.02263 1.01991 1.21554 0.96538 0.97003 0.97550 1.21954 1.02498 0.95221 1.01970 1.21499 0.87930 0.95462 0.86955 1.21802 1.02905 0.91527 1.03443 1.86550 1.76554 1.29408 1.43055 1.21448 0.90802 0.76541 0.83918 1.90717 1.69089 1.47083 1.31891 1.43540 1.05854 1.71557 1.09548 1.17462 0.81099 0.96669 0.96249 1.20565 0.94329 1.07004 1.00961 1.20536 0.93218 0.97671 0.96757 1.20259 0.99739 1.06761 0.95268 1.19062 0.89575 0.91714 0.88196 1.84005 1.34880 1.58727 1.30271 1.21231 0.91634 1.28156 1.05977 0.89280 1.25272 0.95904 0.97197 0.98025 1.70026 1.06599 1.40419 1.32666 0.85801 0.78777 0.79476 0.79487 1.19503 1.20236 1.19546 1.20802 0.94184 1.10408 1.02479 0.92523 0.92232 0.92011 0.89201 0.91383 0.91871 0.92853 0.91235 0.90164 0.90381 0.76983 0.75282 0.86231 0.86617 0.86366 0.91940 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.76 37.16 0.33 -0.79 16 2 C -0.11 -1.04 1.97 -90.62 -0.18 -1.22 16 3 C -0.16 -1.60 8.61 37.16 0.32 -1.28 16 4 C 0.13 1.33 0.77 -91.77 -0.07 1.26 16 5 C -0.14 -1.30 8.51 37.15 0.32 -0.98 16 6 O -0.55 -5.34 11.52 -35.23 -0.41 -5.75 16 7 C 0.49 6.96 5.58 -10.99 -0.06 6.90 16 8 O -0.51 -8.89 12.64 5.55 0.07 -8.82 16 9 N -0.66 -10.02 5.29 -9.88 -0.05 -10.07 16 10 C 0.18 3.41 6.31 -83.72 -0.53 2.88 16 11 C -0.21 -3.99 8.66 -39.34 -0.34 -4.33 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.59 16 13 C -0.20 -4.32 9.99 -39.36 -0.39 -4.71 16 14 C 0.17 4.09 6.65 -39.14 -0.26 3.83 16 15 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 16 C -0.39 -10.89 9.49 30.88 0.29 -10.59 16 17 H 0.09 2.26 5.20 -52.48 -0.27 1.98 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 20 Si 0.94 20.24 29.55 -169.99 -5.02 15.22 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.26 -5.56 9.08 -39.20 -0.36 -5.92 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.43 6.24 -51.93 -0.32 0.10 16 27 H 0.06 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.09 0.96 7.91 -51.93 -0.41 0.55 16 29 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.45 6.80 -51.93 -0.35 0.10 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.62 6.37 -51.93 -0.33 0.29 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.38 3.02 7.37 45.56 0.34 3.36 16 36 H 0.41 5.33 8.12 -40.82 -0.33 5.00 16 37 H 0.12 2.23 6.28 -52.49 -0.33 1.90 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 2.74 5.63 -52.49 -0.30 2.44 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.10 334.77 -5.76 -37.85 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -4.72 Total: 11.42 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.43 Total: -15.53 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.71 Total: -34.47 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.34 Total: -19.54 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.10 -5.76 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771193431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.031 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds