Wall clock time and date at job start Tue Mar 31 2020 07:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.53008 * 109.46851 * 119.99963 * 2 1 3 5 5 C 1.52994 * 109.47077 * 61.36642 * 4 2 1 6 6 O 1.42900 * 109.47054 * 301.36522 * 4 2 1 7 7 C 1.50695 * 109.46762 * 181.36594 * 4 2 1 8 8 O 1.21285 * 120.00148 * 333.07846 * 7 4 2 9 9 N 1.34781 * 120.00133 * 153.35369 * 7 4 2 10 10 C 1.39916 * 120.00431 * 174.69736 * 9 7 4 11 11 C 1.38967 * 120.03534 * 328.27588 * 10 9 7 12 12 C 1.38162 * 120.06853 * 179.76756 * 11 10 9 13 13 C 1.38173 * 120.13261 * 0.50677 * 12 11 10 14 14 C 1.38902 * 120.07543 * 359.74272 * 13 12 11 15 15 O 1.35754 * 120.03710 * 179.97438 * 14 13 12 16 16 C 1.34825 * 117.00316 * 174.58014 * 15 14 13 17 17 H 1.08006 * 120.00347 * 5.11023 * 16 15 14 18 18 C 1.38650 * 120.00209 * 185.11338 * 16 15 14 19 19 N 1.31559 * 119.99827 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00104 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46878 * 60.00387 * 20 18 16 22 22 H 1.48500 * 109.46814 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47335 * 299.99946 * 20 18 16 24 24 C 1.38716 * 120.03659 * 148.54585 * 10 9 7 25 25 H 1.08998 * 109.47383 * 64.45120 * 1 2 3 26 26 H 1.08995 * 109.47380 * 184.45410 * 1 2 3 27 27 H 1.08998 * 109.47329 * 304.45455 * 1 2 3 28 28 H 1.08995 * 109.47184 * 239.99682 * 2 1 3 29 29 H 1.09000 * 109.46542 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47040 * 299.99751 * 3 2 1 31 31 H 1.09001 * 109.47329 * 60.00251 * 3 2 1 32 32 H 1.09000 * 109.46820 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46993 * 299.99575 * 5 4 2 34 34 H 1.08999 * 109.47553 * 59.99831 * 5 4 2 35 35 H 0.96709 * 114.00039 * 300.00276 * 6 4 2 36 36 H 0.96998 * 119.99612 * 354.69754 * 9 7 4 37 37 H 1.07994 * 119.96616 * 359.97438 * 11 10 9 38 38 H 1.07995 * 119.93504 * 180.23128 * 12 11 10 39 39 H 1.08008 * 119.95931 * 179.72421 * 13 12 11 40 40 H 0.96999 * 120.00018 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.06963 * 359.96234 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5582 -2.1733 1.2322 6 8 1.5376 -0.0664 2.4158 7 6 3.5465 -0.6920 1.2664 8 8 4.1634 -0.6154 0.2249 9 7 4.2086 -0.7566 2.4386 10 6 5.6052 -0.8414 2.4496 11 6 6.2706 -1.4940 1.4188 12 6 7.6498 -1.5740 1.4265 13 6 8.3713 -1.0148 2.4638 14 6 7.7118 -0.3655 3.4996 15 8 8.4214 0.1832 4.5186 16 6 7.7306 0.8946 5.4321 17 1 6.6527 0.9383 5.3800 18 6 8.4039 1.5701 6.4385 19 7 9.7169 1.5173 6.5017 20 14 7.4467 2.5563 7.7037 21 1 6.5191 1.6560 8.4345 22 1 8.3924 3.1780 8.6652 23 1 6.6680 3.6184 7.0176 24 6 6.3268 -0.2789 3.4922 25 1 -0.3634 0.4432 -0.9271 26 1 -0.3634 -1.0245 0.0798 27 1 -0.3634 0.5814 0.8474 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.9219 -2.6872 2.1220 33 1 0.4685 -2.1944 1.2199 34 1 1.9414 -2.6729 0.3424 35 1 1.8041 0.8601 2.4924 36 1 3.7169 -0.7442 3.2746 37 1 5.7091 -1.9363 0.6092 38 1 8.1649 -2.0785 0.6224 39 1 9.4492 -1.0828 2.4692 40 1 10.1879 1.9896 7.2059 41 1 5.8118 0.2256 4.2963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771193431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:39 Heat of formation + Delta-G solvation = -115.764836 kcal Electronic energy + Delta-G solvation = -23765.956559 eV Core-core repulsion = 20224.636086 eV Total energy + Delta-G solvation = -3541.320474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.04868 -40.66932 -39.00822 -37.89326 -35.89223 -34.70560 -34.23216 -31.77055 -30.91398 -30.20174 -28.16766 -27.32624 -25.56210 -23.76702 -23.52430 -21.83900 -20.76919 -19.96360 -19.45885 -18.84560 -17.50633 -17.14522 -16.91731 -16.56116 -16.16886 -15.82745 -15.74803 -15.60481 -15.47484 -14.63327 -14.42190 -14.12940 -14.04652 -13.56740 -13.45527 -13.42929 -13.24277 -13.17964 -12.89214 -12.81837 -12.68576 -12.58114 -12.44361 -12.15614 -12.01127 -11.79943 -11.45511 -11.35305 -11.27464 -10.76574 -10.46148 -9.38369 -8.90258 -8.47133 -6.16426 0.33848 0.66368 1.35727 1.43832 1.50309 1.52090 1.90452 2.17783 2.81926 3.05846 3.14303 3.40097 3.48664 3.60237 3.80051 4.08591 4.18086 4.29414 4.38245 4.41754 4.49982 4.59703 4.68777 4.71679 4.78023 4.79082 4.94332 4.95862 5.00168 5.09690 5.10408 5.20135 5.32975 5.35143 5.44399 5.47112 5.63386 5.64682 6.00470 6.11901 6.29424 6.54478 6.96908 7.01626 7.75795 8.75624 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.004086 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.325866 B = 6850.879246 C = 7898.942490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.159 4.159 4 C 0.137 3.863 5 C -0.141 4.141 6 O -0.546 6.546 7 C 0.487 3.513 8 O -0.542 6.542 9 N -0.655 5.655 10 C 0.185 3.815 11 C -0.202 4.202 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.136 3.864 15 O -0.225 6.225 16 C -0.416 4.416 17 H 0.103 0.897 18 C -0.021 4.021 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.255 1.255 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.262 4.262 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.389 0.611 36 H 0.422 0.578 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.273 0.727 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.436 -3.749 -9.966 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.124 4.124 3 C -0.216 4.216 4 C 0.093 3.907 5 C -0.198 4.198 6 O -0.354 6.354 7 C 0.275 3.725 8 O -0.419 6.419 9 N -0.301 5.301 10 C 0.090 3.910 11 C -0.223 4.223 12 C -0.069 4.069 13 C -0.235 4.235 14 C 0.084 3.916 15 O -0.132 6.132 16 C -0.492 4.492 17 H 0.120 0.880 18 C -0.218 4.218 19 N -0.557 5.557 20 Si 0.837 3.163 21 H -0.179 1.179 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.283 4.283 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.240 0.760 36 H 0.261 0.739 37 H 0.150 0.850 38 H 0.172 0.828 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.931 -4.213 -10.431 22.887 hybrid contribution 0.476 1.085 0.979 1.537 sum -19.455 -3.127 -9.452 21.854 Atomic orbital electron populations 1.21795 0.91968 1.03080 1.02655 1.21552 0.98023 0.96320 0.96481 1.21948 1.00348 0.96004 1.03304 1.21470 0.84737 0.96750 0.87784 1.21874 1.04225 0.90245 1.03486 1.86557 1.76098 1.30177 1.42613 1.22287 0.92439 0.74915 0.82826 1.90700 1.70129 1.48175 1.32858 1.43573 1.04227 1.71496 1.10811 1.17521 0.83083 0.95249 0.95117 1.20886 0.94655 1.05902 1.00840 1.20932 0.93249 0.96266 0.96496 1.20491 1.00206 1.07184 0.95585 1.19588 0.90923 0.92604 0.88457 1.83975 1.36477 1.60731 1.31978 1.21781 0.92512 1.28512 1.06398 0.87978 1.26589 0.96979 0.98121 1.00143 1.70178 1.08770 1.42554 1.34242 0.84665 0.77403 0.77928 0.76344 1.17878 1.19751 1.18200 1.20831 0.93443 1.10725 1.03323 0.91595 0.91285 0.91713 0.90229 0.94579 0.90919 0.91287 0.91460 0.88134 0.90165 0.76003 0.73913 0.84993 0.82799 0.86262 0.91784 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.76 71.98 0.63 -1.04 16 2 C -0.10 -1.77 1.97 -10.79 -0.02 -1.80 16 3 C -0.16 -2.90 8.61 71.98 0.62 -2.28 16 4 C 0.14 2.55 0.77 -11.54 -0.01 2.54 16 5 C -0.14 -2.20 8.51 71.98 0.61 -1.59 16 6 O -0.55 -9.01 11.52 -148.98 -1.72 -10.73 16 7 C 0.49 13.05 5.58 87.65 0.49 13.54 16 8 O -0.54 -18.01 12.64 -3.04 -0.04 -18.05 16 9 N -0.66 -18.85 5.29 -303.56 -1.60 -20.45 16 10 C 0.18 6.89 6.31 38.14 0.24 7.13 16 11 C -0.20 -7.42 8.66 22.43 0.19 -7.22 16 12 C -0.05 -1.85 10.03 22.24 0.22 -1.63 16 13 C -0.21 -9.38 9.99 22.41 0.22 -9.15 16 14 C 0.14 6.80 6.65 22.56 0.15 6.95 16 15 O -0.23 -13.48 9.76 -22.74 -0.22 -13.70 16 16 C -0.42 -23.86 9.49 67.92 0.64 -23.22 16 17 H 0.10 5.30 5.20 -2.91 -0.02 5.29 16 18 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 19 N -0.92 -56.00 13.67 21.61 0.30 -55.71 16 20 Si 1.02 41.91 29.55 68.60 2.03 43.94 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 C -0.26 -11.43 9.08 22.51 0.20 -11.22 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.72 6.24 -2.39 -0.01 0.71 16 27 H 0.06 0.77 7.79 -2.39 -0.02 0.75 16 28 H 0.08 1.54 7.91 -2.39 -0.02 1.52 16 29 H 0.04 0.89 6.42 -2.39 -0.02 0.87 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.01 6.80 -2.39 -0.02 0.99 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.19 6.37 -2.38 -0.02 1.17 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.39 5.08 7.37 -74.05 -0.55 4.54 16 36 H 0.42 10.19 8.12 -92.71 -0.75 9.44 16 37 H 0.13 4.60 6.28 -2.91 -0.02 4.58 16 38 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 39 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.13 5.53 5.63 -2.91 -0.02 5.51 16 Total: -1.00 -72.64 334.77 3.19 -69.45 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.22 Total: 34.92 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 4.67 Total: -29.67 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -1.31 Total: -76.16 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.98 Total: -42.48 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -72.64 3.19 -69.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771193431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.310 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds