Wall clock time and date at job start Tue Mar 31 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.52998 * 109.47429 * 65.35312 * 3 2 1 5 5 C 1.53002 * 109.47162 * 305.35031 * 3 2 1 6 6 N 1.46505 * 109.47279 * 185.35412 * 3 2 1 7 7 C 1.34774 * 119.99769 * 304.19265 * 6 3 2 8 8 S 1.71198 * 120.00083 * 354.34699 * 7 6 3 9 9 N 1.34780 * 120.00051 * 174.34661 * 7 6 3 10 10 C 1.39404 * 120.00007 * 185.34737 * 9 7 6 11 11 C 1.38660 * 119.65065 * 185.31777 * 10 9 7 12 12 C 1.40813 * 118.67257 * 179.72460 * 11 10 9 13 13 C 1.41547 * 120.99349 * 180.25378 * 12 11 10 14 14 H 1.08005 * 119.99554 * 145.19218 * 13 12 11 15 15 C 1.40023 * 120.00277 * 325.19258 * 13 12 11 16 16 N 1.30750 * 120.00100 * 4.82478 * 15 13 12 17 17 Si 1.86797 * 120.00212 * 184.82609 * 15 13 12 18 18 H 1.48499 * 109.47288 * 59.99727 * 17 15 13 19 19 H 1.48505 * 109.47061 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47292 * 299.99604 * 17 15 13 21 21 C 1.41169 * 118.00777 * 0.27353 * 12 11 10 22 22 C 1.36588 * 119.13159 * 359.97438 * 21 12 11 23 23 N 1.32074 * 121.25709 * 0.02562 * 22 21 12 24 24 H 1.08999 * 109.46812 * 60.00051 * 1 2 3 25 25 H 1.09003 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46930 * 299.99979 * 1 2 3 27 27 H 1.08998 * 109.47508 * 239.99532 * 2 1 3 28 28 H 1.09001 * 109.47323 * 119.99961 * 2 1 3 29 29 H 1.09001 * 109.46884 * 184.93787 * 4 3 2 30 30 H 1.09006 * 109.46947 * 304.93323 * 4 3 2 31 31 H 1.08996 * 109.46942 * 64.93207 * 4 3 2 32 32 H 1.08999 * 109.47373 * 305.07008 * 5 3 2 33 33 H 1.09002 * 109.46910 * 65.06564 * 5 3 2 34 34 H 1.08996 * 109.47459 * 185.07060 * 5 3 2 35 35 H 0.97003 * 120.00182 * 124.19258 * 6 3 2 36 36 H 0.97002 * 119.99904 * 5.34386 * 9 7 6 37 37 H 1.07998 * 120.66033 * 359.97438 * 11 10 9 38 38 H 0.96995 * 120.00318 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.43281 * 179.97438 * 21 12 11 40 40 H 1.07992 * 119.36757 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6429 2.1239 1.3110 5 6 1.4231 2.2015 -1.1766 6 7 3.4993 1.4445 -0.1289 7 6 4.2546 0.7598 0.7527 8 16 3.5220 0.0080 2.1051 9 7 5.5867 0.6669 0.5696 10 6 6.3527 -0.1324 1.4168 11 6 7.7337 -0.1369 1.2927 12 6 8.4876 -0.9474 2.1631 13 6 9.9003 -0.9854 2.0832 14 1 10.4890 -1.1001 2.9813 15 6 10.5345 -0.8743 0.8397 16 7 9.8285 -0.6411 -0.2358 17 14 12.3893 -1.0594 0.7174 18 1 12.7856 -2.4055 1.2032 19 1 12.8104 -0.8994 -0.6977 20 1 13.0465 -0.0196 1.5493 21 6 7.7923 -1.7211 3.1174 22 6 6.4287 -1.6551 3.1610 23 7 5.7530 -0.8836 2.3288 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.9288 3.1751 1.2752 30 1 0.5645 2.0451 1.4493 31 1 2.1523 1.6368 2.1425 32 1 1.6305 1.6662 -2.1031 33 1 0.3451 2.2779 -1.0345 34 1 1.8543 3.2011 -1.2302 35 1 3.9220 1.9387 -0.8487 36 1 6.0124 1.1561 -0.1518 37 1 8.2215 0.4722 0.5461 38 1 10.2677 -0.5645 -1.0972 39 1 8.3315 -2.3568 3.8040 40 1 5.8929 -2.2457 3.8892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774196389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:42 Heat of formation + Delta-G solvation = 64.880801 kcal Electronic energy + Delta-G solvation = -21239.467617 eV Core-core repulsion = 18181.026148 eV Total energy + Delta-G solvation = -3058.441469 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65640 -38.62415 -36.29211 -34.00191 -32.81545 -30.52286 -29.84238 -28.38418 -27.48407 -26.08843 -24.12744 -23.59945 -21.94401 -21.05467 -19.45331 -18.08805 -17.84197 -16.54809 -15.61565 -15.17910 -14.88151 -14.68334 -14.43277 -14.25956 -13.99083 -13.83990 -13.07022 -12.87163 -12.67042 -12.53593 -12.22424 -11.99395 -11.81220 -11.48243 -11.37688 -11.26840 -11.23123 -10.91663 -10.73888 -10.57027 -10.35155 -10.22616 -10.15986 -9.50296 -9.35099 -8.41576 -7.89140 -7.38034 -6.84733 -6.69816 -5.17405 -4.63531 1.67884 2.55470 2.81693 2.92667 3.01267 3.03814 3.10707 3.27313 3.87380 3.89616 4.69716 4.75436 4.87601 5.07632 5.34664 5.43585 5.58627 5.60393 5.68248 5.72425 5.76737 5.80678 5.97778 6.04966 6.20612 6.30638 6.44018 6.46044 6.72115 6.78195 6.81818 6.87356 6.97897 7.07211 7.15451 7.38454 7.49057 7.74718 7.89235 8.14864 8.45561 8.70151 8.76930 9.61719 10.15002 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.003832 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.066240 B = 7305.800005 C = 7911.735269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.189 3.811 4 C -0.188 4.188 5 C -0.157 4.157 6 N -0.693 5.693 7 C 0.534 3.466 8 S -0.531 6.531 9 N -0.606 5.606 10 C 0.309 3.691 11 C -0.218 4.218 12 C 0.138 3.862 13 C -0.462 4.462 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.812 5.812 17 Si 0.918 3.082 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.260 4.260 22 C 0.104 3.896 23 N -0.483 5.483 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.130 0.870 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.388 0.612 36 H 0.401 0.599 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.102 0.898 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 5.770 -4.851 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C 0.104 3.896 4 C -0.247 4.247 5 C -0.214 4.214 6 N -0.326 5.326 7 C 0.178 3.822 8 S -0.397 6.397 9 N -0.228 5.228 10 C 0.082 3.918 11 C -0.245 4.245 12 C 0.129 3.871 13 C -0.494 4.494 14 H 0.098 0.902 15 C -0.142 4.142 16 N -0.439 5.439 17 Si 0.742 3.258 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.284 4.284 22 C -0.051 4.051 23 N -0.200 5.200 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.224 0.776 36 H 0.238 0.762 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.196 5.271 -4.077 13.898 hybrid contribution 2.716 0.846 -1.958 3.453 sum -9.481 6.117 -6.036 12.796 Atomic orbital electron populations 1.21806 0.95738 1.01452 1.01186 1.22578 0.95710 0.95675 1.06277 1.20376 0.75937 0.97077 0.96246 1.22787 1.02339 0.99498 1.00122 1.22164 1.02115 0.99769 0.97374 1.45247 1.07552 1.50540 1.29252 1.22353 0.84011 0.85149 0.90665 1.92442 1.68324 1.57350 1.21608 1.42321 1.04270 1.44658 1.31574 1.18317 0.87260 0.93821 0.92441 1.21808 0.89650 1.05898 1.07103 1.17569 0.93540 0.87181 0.88819 1.19473 0.91108 1.45041 0.93825 0.90172 1.25874 1.00802 0.92186 0.95313 1.69687 1.37608 1.36903 0.99747 0.86212 0.81692 0.79982 0.77892 1.18925 1.20415 1.18953 1.21939 0.95189 1.05381 1.05864 1.21894 0.91059 0.95355 0.96819 1.69623 1.35314 1.09037 1.06035 0.93538 0.92882 0.92328 0.93082 0.85305 0.93922 0.91852 0.86622 0.92215 0.90174 0.92393 0.77584 0.76186 0.84950 0.91040 0.87983 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.16 -2.17 4.73 -26.73 -0.13 -2.30 16 3 C 0.19 2.27 0.83 -131.82 -0.11 2.16 16 4 C -0.19 -2.41 8.30 37.16 0.31 -2.10 16 5 C -0.16 -1.38 7.91 37.16 0.29 -1.08 16 6 N -0.69 -9.13 5.11 -49.30 -0.25 -9.38 16 7 C 0.53 9.44 7.46 -86.92 -0.65 8.79 16 8 S -0.53 -11.04 19.65 -107.50 -2.11 -13.15 16 9 N -0.61 -11.26 5.39 -13.03 -0.07 -11.33 16 10 C 0.31 7.11 7.37 -154.72 -1.14 5.97 16 11 C -0.22 -5.36 8.61 -38.45 -0.33 -5.69 16 12 C 0.14 3.53 5.57 -106.55 -0.59 2.94 16 13 C -0.46 -11.76 9.10 -37.65 -0.34 -12.10 16 14 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 15 C 0.07 1.79 5.44 -17.34 -0.09 1.69 16 16 N -0.81 -19.89 10.68 55.55 0.59 -19.30 16 17 Si 0.92 18.13 29.56 -169.99 -5.03 13.10 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 C -0.26 -6.21 9.85 -39.07 -0.38 -6.60 16 22 C 0.10 2.42 11.10 -18.04 -0.20 2.22 16 23 N -0.48 -11.58 6.16 -12.76 -0.08 -11.65 16 24 H 0.05 0.41 6.46 -51.93 -0.34 0.08 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.13 2.17 4.64 -29.45 -0.14 2.03 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 31 H 0.12 1.88 4.69 -31.30 -0.15 1.73 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.63 6.65 -51.93 -0.35 0.28 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.39 4.01 8.50 -40.82 -0.35 3.66 16 36 H 0.40 6.18 8.72 -40.82 -0.36 5.82 16 37 H 0.13 3.27 6.25 -52.49 -0.33 2.94 16 38 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -29.15 325.06 -10.24 -39.40 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -5.17 Total: 14.72 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.03 Total: -7.29 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: 0.19 Total: -51.67 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: -11.04 SS G_CDS: -2.11 Total: -13.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.15 -10.24 -39.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774196389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.276 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds