Wall clock time and date at job start Tue Mar 31 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47170 * 2 1 4 4 C 1.52998 * 109.47429 * 65.35312 * 3 2 1 5 5 C 1.53002 * 109.47162 * 305.35031 * 3 2 1 6 6 N 1.46505 * 109.47279 * 185.35412 * 3 2 1 7 7 C 1.34774 * 119.99769 * 304.19265 * 6 3 2 8 8 S 1.71198 * 120.00083 * 354.34699 * 7 6 3 9 9 N 1.34780 * 120.00051 * 174.34661 * 7 6 3 10 10 C 1.39404 * 120.00007 * 185.34737 * 9 7 6 11 11 C 1.38660 * 119.65065 * 185.31777 * 10 9 7 12 12 C 1.40813 * 118.67257 * 179.72460 * 11 10 9 13 13 C 1.41547 * 120.99349 * 180.25378 * 12 11 10 14 14 H 1.08005 * 119.99554 * 145.19218 * 13 12 11 15 15 C 1.40023 * 120.00277 * 325.19258 * 13 12 11 16 16 N 1.30750 * 120.00100 * 4.82478 * 15 13 12 17 17 Si 1.86797 * 120.00212 * 184.82609 * 15 13 12 18 18 H 1.48499 * 109.47288 * 59.99727 * 17 15 13 19 19 H 1.48505 * 109.47061 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47292 * 299.99604 * 17 15 13 21 21 C 1.41169 * 118.00777 * 0.27353 * 12 11 10 22 22 C 1.36588 * 119.13159 * 359.97438 * 21 12 11 23 23 N 1.32074 * 121.25709 * 0.02562 * 22 21 12 24 24 H 1.08999 * 109.46812 * 60.00051 * 1 2 3 25 25 H 1.09003 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46930 * 299.99979 * 1 2 3 27 27 H 1.08998 * 109.47508 * 239.99532 * 2 1 3 28 28 H 1.09001 * 109.47323 * 119.99961 * 2 1 3 29 29 H 1.09001 * 109.46884 * 184.93787 * 4 3 2 30 30 H 1.09006 * 109.46947 * 304.93323 * 4 3 2 31 31 H 1.08996 * 109.46942 * 64.93207 * 4 3 2 32 32 H 1.08999 * 109.47373 * 305.07008 * 5 3 2 33 33 H 1.09002 * 109.46910 * 65.06564 * 5 3 2 34 34 H 1.08996 * 109.47459 * 185.07060 * 5 3 2 35 35 H 0.97003 * 120.00182 * 124.19258 * 6 3 2 36 36 H 0.97002 * 119.99904 * 5.34386 * 9 7 6 37 37 H 1.07998 * 120.66033 * 359.97438 * 11 10 9 38 38 H 0.96995 * 120.00318 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.43281 * 179.97438 * 21 12 11 40 40 H 1.07992 * 119.36757 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6429 2.1239 1.3110 5 6 1.4231 2.2015 -1.1766 6 7 3.4993 1.4445 -0.1289 7 6 4.2546 0.7598 0.7527 8 16 3.5220 0.0080 2.1051 9 7 5.5867 0.6669 0.5696 10 6 6.3527 -0.1324 1.4168 11 6 7.7337 -0.1369 1.2927 12 6 8.4876 -0.9474 2.1631 13 6 9.9003 -0.9854 2.0832 14 1 10.4890 -1.1001 2.9813 15 6 10.5345 -0.8743 0.8397 16 7 9.8285 -0.6411 -0.2358 17 14 12.3893 -1.0594 0.7174 18 1 12.7856 -2.4055 1.2032 19 1 12.8104 -0.8994 -0.6977 20 1 13.0465 -0.0196 1.5493 21 6 7.7923 -1.7211 3.1174 22 6 6.4287 -1.6551 3.1610 23 7 5.7530 -0.8836 2.3288 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.9288 3.1751 1.2752 30 1 0.5645 2.0451 1.4493 31 1 2.1523 1.6368 2.1425 32 1 1.6305 1.6662 -2.1031 33 1 0.3451 2.2779 -1.0345 34 1 1.8543 3.2011 -1.2302 35 1 3.9220 1.9387 -0.8487 36 1 6.0124 1.1561 -0.1518 37 1 8.2215 0.4722 0.5461 38 1 10.2677 -0.5645 -1.0972 39 1 8.3315 -2.3568 3.8040 40 1 5.8929 -2.2457 3.8892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774196389.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:41 Heat of formation + Delta-G solvation = 49.276502 kcal Electronic energy + Delta-G solvation = -21240.144270 eV Core-core repulsion = 18181.026148 eV Total energy + Delta-G solvation = -3059.118122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.11288 -40.09523 -37.76727 -35.79911 -34.11755 -32.37483 -30.99677 -29.90439 -28.39315 -27.94105 -25.26811 -24.94729 -23.68778 -22.77968 -20.66981 -19.68168 -19.31426 -18.04171 -17.22510 -16.72689 -16.34468 -16.00851 -15.87251 -15.69181 -15.49711 -15.11102 -14.68226 -14.35114 -14.13864 -13.65023 -13.37849 -13.14272 -12.88453 -12.86074 -12.73913 -12.67566 -12.42762 -12.21584 -12.10111 -11.96836 -11.90515 -11.78750 -11.45985 -11.19922 -10.75187 -10.17280 -9.77392 -9.03278 -8.57954 -8.35760 -6.81101 -6.53645 0.14586 1.06970 1.13872 1.17177 1.41240 1.51428 1.59644 1.66006 2.22483 2.59444 2.86338 3.73553 3.82607 3.96898 4.08581 4.15025 4.47056 4.55660 4.68606 4.70153 4.76679 4.84368 4.87878 4.91682 5.02219 5.07583 5.11503 5.16703 5.25972 5.29055 5.38622 5.47302 5.55328 5.58611 5.72676 5.81182 5.99231 6.00842 6.27135 6.47935 6.59324 6.82889 6.88928 7.79958 8.35903 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.029558 B = 0.003832 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.066240 B = 7305.800005 C = 7911.735269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.162 4.162 3 C 0.184 3.816 4 C -0.184 4.184 5 C -0.149 4.149 6 N -0.666 5.666 7 C 0.547 3.453 8 S -0.597 6.597 9 N -0.603 5.603 10 C 0.312 3.688 11 C -0.234 4.234 12 C 0.110 3.890 13 C -0.494 4.494 14 H 0.080 0.920 15 C 0.036 3.964 16 N -0.834 5.834 17 Si 0.988 3.012 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.260 1.260 21 C -0.272 4.272 22 C 0.099 3.901 23 N -0.494 5.494 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.408 0.592 36 H 0.416 0.584 37 H 0.127 0.873 38 H 0.287 0.713 39 H 0.114 0.886 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 6.984 -6.666 14.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.202 4.202 3 C 0.099 3.901 4 C -0.244 4.244 5 C -0.207 4.207 6 N -0.298 5.298 7 C 0.189 3.811 8 S -0.463 6.463 9 N -0.228 5.228 10 C 0.083 3.917 11 C -0.260 4.260 12 C 0.101 3.899 13 C -0.526 4.526 14 H 0.098 0.902 15 C -0.178 4.178 16 N -0.461 5.461 17 Si 0.809 3.191 18 H -0.188 1.188 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.296 4.296 22 C -0.057 4.057 23 N -0.212 5.212 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.132 0.868 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.764 6.529 -5.938 15.518 hybrid contribution 2.743 0.519 -1.442 3.142 sum -10.021 7.047 -7.380 14.302 Atomic orbital electron populations 1.21763 0.93510 1.01852 1.02454 1.22433 0.97714 0.96020 1.04019 1.20646 0.74769 0.96900 0.97738 1.22660 1.03089 0.99525 0.99088 1.22141 1.02869 0.99960 0.95704 1.45295 1.08125 1.48373 1.27961 1.22075 0.83569 0.84933 0.90542 1.92622 1.68901 1.60233 1.24586 1.42102 1.04497 1.44658 1.31589 1.18450 0.87376 0.93580 0.92293 1.21754 0.90355 1.06483 1.07451 1.17962 0.94312 0.87883 0.89755 1.19744 0.91426 1.46674 0.94759 0.90155 1.26710 1.05346 0.91270 0.94480 1.69739 1.39468 1.36603 1.00312 0.85145 0.75759 0.79861 0.78295 1.18797 1.19321 1.18388 1.22088 0.95587 1.05778 1.06101 1.22284 0.91117 0.95223 0.97040 1.69827 1.35470 1.09452 1.06475 0.91056 0.93076 0.92121 0.93837 0.88815 0.93015 0.90159 0.89984 0.91318 0.88490 0.90874 0.75277 0.74391 0.85555 0.90278 0.86829 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.18 71.98 0.66 -1.98 16 2 C -0.16 -4.13 4.73 30.59 0.14 -3.99 16 3 C 0.18 3.99 0.83 3.60 0.00 4.00 16 4 C -0.18 -4.41 8.30 71.98 0.60 -3.82 16 5 C -0.15 -2.01 7.91 71.98 0.57 -1.44 16 6 N -0.67 -16.26 5.11 -309.89 -1.58 -17.84 16 7 C 0.55 19.11 7.46 179.05 1.34 20.44 16 8 S -0.60 -25.34 19.65 -56.49 -1.11 -26.45 16 9 N -0.60 -22.31 5.39 -195.13 -1.05 -23.37 16 10 C 0.31 14.60 7.37 132.78 0.98 15.58 16 11 C -0.23 -11.77 8.61 23.00 0.20 -11.57 16 12 C 0.11 5.77 5.57 -21.11 -0.12 5.65 16 13 C -0.49 -25.61 9.10 23.52 0.21 -25.39 16 14 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 15 C 0.04 1.72 5.44 85.29 0.46 2.18 16 16 N -0.83 -40.94 10.68 21.84 0.23 -40.70 16 17 Si 0.99 36.68 29.56 68.60 2.03 38.71 16 18 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 19 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 21 C -0.27 -13.31 9.85 22.60 0.22 -13.08 16 22 C 0.10 4.68 11.10 84.27 0.94 5.61 16 23 N -0.49 -24.19 6.16 -194.30 -1.20 -25.39 16 24 H 0.07 1.02 6.46 -2.39 -0.02 1.00 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.13 6.47 -2.39 -0.02 1.12 16 27 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 3.19 4.64 -16.68 -0.08 3.12 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.63 6.36 -2.38 -0.02 1.61 16 31 H 0.08 2.66 4.69 -15.50 -0.07 2.59 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.05 6.65 -2.39 -0.02 1.04 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 7.20 8.50 -92.71 -0.79 6.41 16 36 H 0.42 12.49 8.72 -92.71 -0.81 11.68 16 37 H 0.13 6.39 6.25 -2.91 -0.02 6.37 16 38 H 0.29 12.77 8.29 -92.71 -0.77 12.00 16 39 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 40 H 0.15 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -65.16 325.06 2.88 -62.27 By element: Atomic # 1 Polarization: 41.21 SS G_CDS: -0.64 Total: 40.56 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 6.21 Total: -7.80 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.60 Total: -107.29 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 2.03 Total: 38.71 kcal Atomic # 16 Polarization: -25.34 SS G_CDS: -1.11 Total: -26.45 kcal Total: -65.16 2.88 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774196389.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.551 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds