Wall clock time and date at job start Tue Mar 31 2020 06:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47030 * 119.99734 * 2 1 3 5 5 C 1.38011 * 119.51113 * 274.99796 * 4 2 1 6 6 C 1.39977 * 119.12661 * 180.02562 * 5 4 2 7 7 C 1.48061 * 120.89744 * 180.02562 * 6 5 4 8 8 O 1.21427 * 119.99725 * 359.97438 * 7 6 5 9 9 O 1.34671 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.45203 * 116.99648 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47045 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47363 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47232 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00454 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47139 * 59.99919 * 17 15 13 19 19 H 1.48500 * 109.47587 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47169 * 300.00324 * 17 15 13 21 21 C 1.39657 * 118.20467 * 0.02562 * 6 5 4 22 22 C 1.38854 * 118.94338 * 0.27282 * 21 6 5 23 23 O 1.35682 * 119.61902 * 179.70066 * 22 21 6 24 24 N 1.31883 * 119.50839 * 95.02279 * 4 2 1 25 25 H 1.09008 * 109.47279 * 300.00331 * 1 2 3 26 26 H 1.09003 * 109.46806 * 59.99935 * 1 2 3 27 27 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47403 * 239.99903 * 2 1 3 29 29 H 1.08993 * 109.47316 * 299.99719 * 3 2 1 30 30 H 1.09002 * 109.46805 * 60.00154 * 3 2 1 31 31 H 1.09003 * 109.46851 * 179.97438 * 3 2 1 32 32 H 1.07997 * 120.44252 * 0.02562 * 5 4 2 33 33 H 1.08997 * 109.47564 * 300.00343 * 10 9 7 34 34 H 1.09002 * 109.47114 * 60.00009 * 10 9 7 35 35 H 1.09008 * 109.47482 * 300.00182 * 11 10 9 36 36 H 1.09002 * 109.47240 * 59.99985 * 11 10 9 37 37 H 1.08992 * 109.46883 * 300.00068 * 12 11 10 38 38 H 1.09005 * 109.46493 * 60.00223 * 12 11 10 39 39 H 0.96993 * 120.00356 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.52494 * 179.97438 * 21 6 5 41 41 H 0.96698 * 114.00037 * 90.00237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1602 -0.0120 2.4140 6 6 2.6281 -0.6797 3.5519 7 6 2.7799 0.0311 4.8418 8 8 2.4975 1.2094 4.9226 9 8 3.2312 -0.6291 5.9254 10 6 3.3555 0.1313 7.1561 11 6 3.8793 -0.7800 8.2678 12 6 4.0097 0.0210 9.5649 13 6 4.5250 -0.8767 10.6601 14 1 4.7386 -1.9148 10.4517 15 6 4.7238 -0.3731 11.9280 16 7 4.4633 0.8908 12.1819 17 14 5.3620 -1.4860 13.2858 18 1 6.6915 -2.0240 12.9010 19 1 5.4875 -0.7089 14.5450 20 1 4.4137 -2.6102 13.4910 21 6 2.9478 -2.0343 3.4376 22 6 2.7954 -2.6592 2.2070 23 8 3.1078 -3.9734 2.0790 24 7 2.3436 -1.9900 1.1603 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.9028 1.0357 2.4617 33 1 4.0516 0.9563 7.0049 34 1 2.3798 0.5264 7.4392 35 1 3.1834 -1.6053 8.4193 36 1 4.8550 -1.1748 7.9845 37 1 4.7052 0.8464 9.4138 38 1 3.0337 0.4154 9.8480 39 1 4.6028 1.2451 13.0740 40 1 3.3124 -2.5859 4.2916 41 1 2.3692 -4.5722 2.2551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775050071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:36 Heat of formation + Delta-G solvation = -115.228540 kcal Electronic energy + Delta-G solvation = -22368.827835 eV Core-core repulsion = 18827.530617 eV Total energy + Delta-G solvation = -3541.297218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24663 -40.01791 -37.89453 -36.61738 -35.44931 -34.06667 -33.04166 -31.70424 -29.87374 -27.61552 -27.33094 -25.31176 -24.50546 -23.12492 -21.79656 -20.59111 -20.28338 -18.75628 -17.74832 -17.39629 -16.64092 -16.46649 -16.19519 -15.90128 -15.43429 -14.89251 -14.72342 -14.50348 -14.21351 -13.87934 -13.35225 -12.98366 -12.83069 -12.35259 -12.26759 -12.23732 -12.20250 -11.93908 -11.80899 -11.55477 -11.26211 -10.99439 -10.90694 -10.71099 -10.61740 -10.49472 -10.27827 -9.87066 -9.79002 -9.55663 -9.22100 -9.20747 -8.41704 -6.06619 -4.10019 0.23406 0.57774 2.35570 2.54335 3.08174 3.30439 3.34944 3.35869 3.37377 3.95571 4.34193 4.42813 4.54652 4.59323 4.65174 4.76486 4.83898 4.99779 5.23340 5.25644 5.29291 5.32374 5.44181 5.48433 5.48742 5.51140 5.61441 5.73029 5.84483 5.90726 5.92373 6.02329 6.31370 6.46600 6.71047 6.91085 7.10486 7.48566 7.55404 7.66105 7.67495 7.91111 8.31743 8.95895 9.54467 11.04772 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002538 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.836985 B =11030.774660 C =11867.853860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.152 4.152 4 C 0.154 3.846 5 C -0.122 4.122 6 C -0.053 4.053 7 C 0.504 3.496 8 O -0.496 6.496 9 O -0.349 6.349 10 C 0.068 3.932 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.135 4.135 22 C 0.309 3.691 23 O -0.477 6.477 24 N -0.483 5.483 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.160 0.840 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.603 -3.605 -25.021 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.210 4.210 4 C 0.016 3.984 5 C -0.141 4.141 6 C -0.062 4.062 7 C 0.347 3.653 8 O -0.384 6.384 9 O -0.265 6.265 10 C -0.004 4.004 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.157 4.157 22 C 0.130 3.870 23 O -0.284 6.284 24 N -0.202 5.202 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.173 0.827 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.178 0.822 41 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.184 -3.405 -25.661 26.865 hybrid contribution 0.082 -0.313 1.858 1.886 sum -7.102 -3.718 -23.803 25.116 Atomic orbital electron populations 1.21833 0.93217 1.02469 1.02564 1.20106 0.96469 0.95540 0.94331 1.21984 1.01664 0.94488 1.02855 1.20911 0.94580 0.88183 0.94724 1.22162 0.98234 1.02419 0.91333 1.19498 1.00990 0.93622 0.92075 1.20895 0.74627 0.85231 0.84542 1.90839 1.46015 1.16252 1.85342 1.86537 1.75917 1.44496 1.19550 1.23628 1.02072 0.95257 0.79464 1.21792 1.00554 0.98619 0.93727 1.19048 0.97620 0.95351 0.89234 1.21120 1.44216 0.96459 0.94329 0.92459 1.25029 0.95515 0.95110 0.98785 1.69951 1.48569 1.13195 1.21634 0.86596 0.79482 0.80527 0.81041 1.20153 1.21243 1.20169 1.22538 0.99575 0.94710 0.98845 1.18968 0.94357 0.86208 0.87490 1.84819 1.39071 1.12027 1.92453 1.66813 1.10875 1.09719 1.32832 0.92188 0.91521 0.92218 0.88776 0.91390 0.91721 0.92090 0.82681 0.91152 0.91152 0.92030 0.92001 0.96182 0.96189 0.92789 0.82250 0.73929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.17 37.16 0.34 -0.56 16 2 C -0.05 -0.33 3.23 -91.77 -0.30 -0.63 16 3 C -0.15 -0.96 8.62 37.16 0.32 -0.64 16 4 C 0.15 1.55 5.79 -82.65 -0.48 1.07 16 5 C -0.12 -1.31 8.74 -39.01 -0.34 -1.65 16 6 C -0.05 -0.66 5.91 -104.69 -0.62 -1.28 16 7 C 0.50 7.65 7.92 34.76 0.28 7.93 16 8 O -0.50 -8.55 16.23 -19.21 -0.31 -8.86 16 9 O -0.35 -5.63 9.57 -40.41 -0.39 -6.02 16 10 C 0.07 1.22 5.47 37.15 0.20 1.42 16 11 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.56 9.11 -34.45 -0.31 -14.87 16 14 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 17 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.14 -1.52 9.64 -38.82 -0.37 -1.89 16 22 C 0.31 3.36 7.74 -17.17 -0.13 3.23 16 23 O -0.48 -4.39 13.56 -18.75 -0.25 -4.65 16 24 N -0.48 -5.45 10.27 -9.60 -0.10 -5.55 16 25 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.41 6.48 -51.93 -0.34 0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.16 1.53 5.98 -52.49 -0.31 1.22 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.16 1.66 7.71 -52.49 -0.40 1.25 16 41 H 0.40 1.63 9.06 45.56 0.41 2.05 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -32.70 354.05 -7.05 -39.76 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.26 Total: -2.31 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.80 Total: -8.21 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.64 Total: -31.42 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.95 Total: -19.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.70 -7.05 -39.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775050071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.472 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds