Wall clock time and date at job start Tue Mar 31 2020 06:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47030 * 119.99734 * 2 1 3 5 5 C 1.38011 * 119.51113 * 274.99796 * 4 2 1 6 6 C 1.39977 * 119.12661 * 180.02562 * 5 4 2 7 7 C 1.48061 * 120.89744 * 180.02562 * 6 5 4 8 8 O 1.21427 * 119.99725 * 359.97438 * 7 6 5 9 9 O 1.34671 * 119.99727 * 179.97438 * 7 6 5 10 10 C 1.45203 * 116.99648 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47045 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47363 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.47232 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00044 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00086 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00200 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00454 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47139 * 59.99919 * 17 15 13 19 19 H 1.48500 * 109.47587 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47169 * 300.00324 * 17 15 13 21 21 C 1.39657 * 118.20467 * 0.02562 * 6 5 4 22 22 C 1.38854 * 118.94338 * 0.27282 * 21 6 5 23 23 O 1.35682 * 119.61902 * 179.70066 * 22 21 6 24 24 N 1.31883 * 119.50839 * 95.02279 * 4 2 1 25 25 H 1.09008 * 109.47279 * 300.00331 * 1 2 3 26 26 H 1.09003 * 109.46806 * 59.99935 * 1 2 3 27 27 H 1.09000 * 109.47282 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47403 * 239.99903 * 2 1 3 29 29 H 1.08993 * 109.47316 * 299.99719 * 3 2 1 30 30 H 1.09002 * 109.46805 * 60.00154 * 3 2 1 31 31 H 1.09003 * 109.46851 * 179.97438 * 3 2 1 32 32 H 1.07997 * 120.44252 * 0.02562 * 5 4 2 33 33 H 1.08997 * 109.47564 * 300.00343 * 10 9 7 34 34 H 1.09002 * 109.47114 * 60.00009 * 10 9 7 35 35 H 1.09008 * 109.47482 * 300.00182 * 11 10 9 36 36 H 1.09002 * 109.47240 * 59.99985 * 11 10 9 37 37 H 1.08992 * 109.46883 * 300.00068 * 12 11 10 38 38 H 1.09005 * 109.46493 * 60.00223 * 12 11 10 39 39 H 0.96993 * 120.00356 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.52494 * 179.97438 * 21 6 5 41 41 H 0.96698 * 114.00037 * 90.00237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1602 -0.0120 2.4140 6 6 2.6281 -0.6797 3.5519 7 6 2.7799 0.0311 4.8418 8 8 2.4975 1.2094 4.9226 9 8 3.2312 -0.6291 5.9254 10 6 3.3555 0.1313 7.1561 11 6 3.8793 -0.7800 8.2678 12 6 4.0097 0.0210 9.5649 13 6 4.5250 -0.8767 10.6601 14 1 4.7386 -1.9148 10.4517 15 6 4.7238 -0.3731 11.9280 16 7 4.4633 0.8908 12.1819 17 14 5.3620 -1.4860 13.2858 18 1 6.6915 -2.0240 12.9010 19 1 5.4875 -0.7089 14.5450 20 1 4.4137 -2.6102 13.4910 21 6 2.9478 -2.0343 3.4376 22 6 2.7954 -2.6592 2.2070 23 8 3.1078 -3.9734 2.0790 24 7 2.3436 -1.9900 1.1603 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.9028 1.0357 2.4617 33 1 4.0516 0.9563 7.0049 34 1 2.3798 0.5264 7.4392 35 1 3.1834 -1.6053 8.4193 36 1 4.8550 -1.1748 7.9845 37 1 4.7052 0.8464 9.4138 38 1 3.0337 0.4154 9.8480 39 1 4.6028 1.2451 13.0740 40 1 3.3124 -2.5859 4.2916 41 1 2.3692 -4.5722 2.2551 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775050071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:36 Heat of formation + Delta-G solvation = -137.051975 kcal Electronic energy + Delta-G solvation = -22369.774171 eV Core-core repulsion = 18827.530617 eV Total energy + Delta-G solvation = -3542.243553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.19776 -41.16712 -38.63303 -37.94394 -36.16113 -35.93192 -34.05972 -33.54118 -30.65544 -29.17194 -28.06698 -26.55741 -25.35847 -24.74797 -22.71114 -22.20212 -21.37705 -19.58941 -18.92388 -18.47686 -18.23281 -17.80943 -17.41631 -16.82935 -16.50314 -16.40510 -15.74788 -15.58156 -15.26980 -14.81969 -14.53847 -14.13078 -13.95818 -13.85499 -13.59318 -13.49201 -12.92879 -12.86071 -12.82061 -12.55286 -12.46018 -12.42320 -12.13804 -12.11126 -12.09302 -11.81397 -11.53728 -11.47135 -11.28489 -11.17872 -10.68048 -10.57088 -10.00172 -8.22263 -6.33738 -0.72565 -0.22885 1.25288 1.31318 1.42013 1.44430 1.52575 2.30476 2.40886 2.51390 3.11760 3.14918 3.37315 3.70806 3.77570 3.95747 3.96839 3.99896 4.14318 4.20628 4.27007 4.36310 4.47965 4.58432 4.75341 4.77638 4.81291 4.87622 4.95668 4.99676 5.04733 5.14021 5.24377 5.28853 5.37340 5.39336 5.47946 5.62902 5.79496 6.17988 6.41709 6.49894 6.72846 6.82030 7.35829 8.89697 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.002538 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.836985 B =11030.774660 C =11867.853860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.151 4.151 4 C 0.157 3.843 5 C -0.121 4.121 6 C -0.065 4.065 7 C 0.507 3.493 8 O -0.520 6.520 9 O -0.347 6.347 10 C 0.078 3.922 11 C -0.094 4.094 12 C 0.026 3.974 13 C -0.544 4.544 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.265 1.265 21 C -0.136 4.136 22 C 0.311 3.689 23 O -0.483 6.483 24 N -0.494 5.494 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.162 0.838 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.166 0.834 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -4.931 -26.187 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.209 4.209 4 C 0.019 3.981 5 C -0.141 4.141 6 C -0.074 4.074 7 C 0.352 3.648 8 O -0.410 6.410 9 O -0.262 6.262 10 C 0.004 3.996 11 C -0.132 4.132 12 C -0.011 4.011 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.190 1.190 21 C -0.157 4.157 22 C 0.132 3.868 23 O -0.293 6.293 24 N -0.214 5.214 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.180 0.820 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.183 0.817 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.328 -4.766 -26.846 28.234 hybrid contribution 0.093 0.081 2.121 2.124 sum -7.235 -4.686 -24.725 26.185 Atomic orbital electron populations 1.21824 0.92209 1.02340 1.03407 1.20209 0.97193 0.95840 0.93047 1.21990 1.01286 0.93863 1.03724 1.21345 0.93587 0.87872 0.95329 1.22282 0.97934 1.02801 0.91098 1.19384 1.02813 0.94210 0.90991 1.21344 0.73574 0.85074 0.84842 1.90826 1.47184 1.17332 1.85658 1.86511 1.76267 1.44157 1.19307 1.23278 1.01819 0.94573 0.79891 1.21475 1.01298 0.98234 0.92169 1.18929 0.95610 0.95043 0.91532 1.21593 1.44103 0.97177 0.95299 0.91652 1.25998 0.95682 0.96602 1.01598 1.70086 1.49749 1.15161 1.22350 0.85458 0.79247 0.78557 0.77546 1.19091 1.20984 1.19025 1.22573 0.99586 0.94204 0.99375 1.19021 0.93700 0.86855 0.87191 1.84771 1.40568 1.11608 1.92388 1.66920 1.11235 1.10254 1.33033 0.92406 0.89650 0.92822 0.88492 0.89538 0.91869 0.92706 0.82025 0.91428 0.91262 0.91230 0.91383 0.98424 0.98332 0.92667 0.81655 0.71364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.17 71.98 0.66 -0.83 16 2 C -0.04 -0.57 3.23 -11.54 -0.04 -0.61 16 3 C -0.15 -1.64 8.62 71.98 0.62 -1.02 16 4 C 0.16 2.94 5.79 42.50 0.25 3.19 16 5 C -0.12 -2.51 8.74 22.64 0.20 -2.32 16 6 C -0.07 -1.57 5.91 -19.91 -0.12 -1.69 16 7 C 0.51 15.24 7.92 70.43 0.56 15.80 16 8 O -0.52 -17.95 16.23 20.07 0.33 -17.63 16 9 O -0.35 -11.01 9.57 -55.80 -0.53 -11.54 16 10 C 0.08 2.77 5.47 71.98 0.39 3.16 16 11 C -0.09 -3.78 5.53 30.59 0.17 -3.61 16 12 C 0.03 1.34 4.97 29.85 0.15 1.49 16 13 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 14 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 17 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 C -0.14 -2.90 9.64 22.76 0.22 -2.68 16 22 C 0.31 6.34 7.74 84.79 0.66 6.99 16 23 O -0.48 -8.03 13.56 -90.00 -1.22 -9.25 16 24 N -0.49 -10.46 10.27 -297.17 -3.05 -13.51 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.71 6.48 -2.39 -0.02 0.69 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.16 3.08 5.98 -2.91 -0.02 3.06 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.17 3.25 7.71 -2.91 -0.02 3.23 16 41 H 0.42 2.59 9.06 -74.06 -0.67 1.92 16 Total: -1.00 -69.45 354.05 2.61 -66.84 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.37 Total: 7.38 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.41 Total: -11.84 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -2.77 Total: -69.60 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.43 Total: -38.42 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.45 2.61 -66.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775050071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.214 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds