Wall clock time and date at job start Tue Mar 31 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46938 * 2 1 4 4 C 1.53000 * 109.46827 * 119.99891 * 2 1 3 5 5 C 1.50701 * 109.47149 * 175.00408 * 4 2 1 6 6 C 1.38016 * 119.51486 * 124.99625 * 5 4 2 7 7 C 1.39967 * 119.13057 * 180.02562 * 6 5 4 8 8 C 1.48061 * 120.89766 * 180.02562 * 7 6 5 9 9 O 1.21430 * 120.00376 * 359.97438 * 8 7 6 10 10 O 1.34672 * 120.00152 * 179.97438 * 8 7 6 11 11 C 1.45194 * 117.00239 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47245 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47247 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99450 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99921 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47017 * 90.00466 * 17 15 13 19 19 H 1.48503 * 109.47493 * 210.00058 * 17 15 13 20 20 H 1.48497 * 109.47106 * 330.00496 * 17 15 13 21 21 C 1.39657 * 118.20445 * 0.02562 * 7 6 5 22 22 C 1.38854 * 118.94338 * 0.27284 * 21 7 6 23 23 O 1.35682 * 119.61902 * 179.70066 * 22 21 7 24 24 N 1.31883 * 119.50839 * 305.02105 * 5 4 2 25 25 H 1.08994 * 109.47315 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46968 * 60.00021 * 1 2 3 27 27 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47353 * 240.00126 * 2 1 3 29 29 H 1.09002 * 109.47081 * 60.00145 * 3 2 1 30 30 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47274 * 299.99792 * 3 2 1 32 32 H 1.08994 * 109.47077 * 55.00456 * 4 2 1 33 33 H 1.09001 * 109.47085 * 294.99754 * 4 2 1 34 34 H 1.08002 * 120.43437 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.47485 * 300.00400 * 11 10 8 36 36 H 1.09002 * 109.47028 * 59.99966 * 11 10 8 37 37 H 1.09005 * 109.46966 * 300.00244 * 12 11 10 38 38 H 1.08999 * 109.46719 * 59.99936 * 12 11 10 39 39 H 0.97002 * 120.00235 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.52494 * 179.97438 * 21 7 6 41 41 H 0.96698 * 114.00037 * 90.00237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 6 4.3010 -0.3419 2.2335 7 6 5.6953 -0.4460 2.1689 8 6 6.5475 0.0632 3.2675 9 8 6.0383 0.5801 4.2412 10 8 7.8873 -0.0468 3.1868 11 6 8.6597 0.4747 4.3001 12 6 10.1507 0.2622 4.0303 13 6 10.9524 0.8029 5.1861 14 1 10.4489 1.2534 6.0286 15 6 12.3287 0.7234 5.1675 16 7 13.0284 1.1957 6.1759 17 14 13.1996 -0.0552 3.7098 18 1 13.4942 0.9876 2.6944 19 1 14.4699 -0.6751 4.1654 20 1 12.3273 -1.0970 3.1108 21 6 6.2611 -1.0432 1.0403 22 6 5.4240 -1.5015 0.0317 23 8 5.9593 -2.0784 -1.0736 24 7 4.1113 -1.3879 0.1388 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6053 -1.7197 1.2951 33 1 1.7516 -0.1582 2.1370 34 1 3.8255 0.1138 3.0894 35 1 8.4597 1.5401 4.4138 36 1 8.3775 -0.0475 5.2143 37 1 10.3511 -0.8032 3.9164 38 1 10.4325 0.7847 3.1161 39 1 13.9967 1.1394 6.1630 40 1 7.3328 -1.1426 0.9514 41 1 6.0738 -3.0359 -1.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777141677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:16 Heat of formation + Delta-G solvation = -113.980526 kcal Electronic energy + Delta-G solvation = -22614.958028 eV Core-core repulsion = 19073.714927 eV Total energy + Delta-G solvation = -3541.243100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12369 -39.85324 -37.83506 -36.49429 -36.08306 -33.46506 -32.96152 -31.21078 -30.77837 -27.44828 -27.30448 -26.09950 -24.35973 -23.10242 -21.33678 -20.72880 -20.08681 -18.97456 -17.70439 -16.94569 -16.85110 -16.26738 -16.07337 -15.92059 -15.56026 -15.15453 -14.78028 -14.29559 -14.19377 -13.70314 -13.28244 -13.12089 -12.86961 -12.67669 -12.53081 -12.42564 -12.07180 -11.99861 -11.65108 -11.38211 -11.33496 -11.21104 -10.93818 -10.86250 -10.77521 -10.25235 -10.18640 -10.00654 -9.79999 -9.73530 -9.41169 -9.11554 -8.67185 -6.17550 -4.19401 0.32935 0.65667 2.48295 2.73320 3.17634 3.24466 3.32099 3.35406 3.44829 4.09322 4.34129 4.41784 4.57527 4.65224 4.68363 4.77281 4.84300 5.01739 5.15828 5.24048 5.26602 5.35909 5.38206 5.45953 5.54321 5.59334 5.68154 5.79839 5.83958 5.84151 5.86740 5.99711 6.09008 6.14128 6.34767 6.57402 7.06723 7.13538 7.16715 7.55316 7.55769 7.86981 8.34051 8.83579 9.41545 10.94872 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002908 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.790993 B = 9624.986480 C =10360.221866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.065 4.065 5 C 0.152 3.848 6 C -0.123 4.123 7 C -0.051 4.051 8 C 0.502 3.498 9 O -0.498 6.498 10 O -0.352 6.352 11 C 0.083 3.917 12 C -0.009 4.009 13 C -0.529 4.529 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.895 5.895 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.263 1.263 21 C -0.137 4.137 22 C 0.309 3.691 23 O -0.477 6.477 24 N -0.481 5.481 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.082 0.918 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.159 0.841 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.702 -6.327 -13.722 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.103 4.103 5 C 0.014 3.986 6 C -0.143 4.143 7 C -0.060 4.060 8 C 0.345 3.655 9 O -0.387 6.387 10 O -0.268 6.268 11 C 0.010 3.990 12 C -0.047 4.047 13 C -0.567 4.567 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.533 5.533 17 Si 0.708 3.292 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.158 4.158 22 C 0.130 3.870 23 O -0.284 6.284 24 N -0.201 5.201 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.177 0.823 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -23.049 -5.899 -14.236 27.726 hybrid contribution 1.314 -0.446 0.246 1.409 sum -21.735 -6.346 -13.990 26.616 Atomic orbital electron populations 1.21842 0.94866 1.01797 1.01918 1.21077 0.95526 0.96279 0.98051 1.21870 1.01063 0.95863 1.01816 1.20707 0.87708 1.02227 0.99650 1.20878 0.96781 0.93017 0.87931 1.22152 0.92177 0.99293 1.00649 1.19531 0.93107 0.99504 0.93809 1.20880 0.82595 0.76664 0.85346 1.90827 1.75201 1.40506 1.32150 1.86526 1.17172 1.74232 1.48896 1.23509 0.91710 0.98509 0.85236 1.19642 0.88157 0.98251 0.98609 1.20811 0.91321 1.40405 1.04153 0.90594 1.24933 0.97270 0.94671 0.96104 1.69889 1.06815 1.45718 1.30901 0.86751 0.79228 0.80288 0.82932 1.20014 1.21121 1.18773 1.22541 1.02981 0.98532 0.91750 1.18959 0.86704 0.95390 0.85990 1.84817 1.81439 1.26887 1.35266 1.66754 1.12772 1.15670 1.24907 0.92588 0.92544 0.92576 0.89917 0.92522 0.93013 0.92616 0.89487 0.89665 0.82945 0.91351 0.91319 0.95298 0.95700 0.92366 0.82324 0.74011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.69 2.84 -90.62 -0.26 -0.95 16 3 C -0.15 -1.22 9.01 37.16 0.33 -0.88 16 4 C -0.07 -0.49 5.08 -27.88 -0.14 -0.64 16 5 C 0.15 1.57 5.16 -82.65 -0.43 1.14 16 6 C -0.12 -1.40 9.27 -39.02 -0.36 -1.76 16 7 C -0.05 -0.68 5.91 -104.69 -0.62 -1.30 16 8 C 0.50 8.38 7.92 34.76 0.28 8.66 16 9 O -0.50 -9.31 16.23 -19.21 -0.31 -9.62 16 10 O -0.35 -6.45 9.57 -40.42 -0.39 -6.83 16 11 C 0.08 1.71 5.41 37.16 0.20 1.91 16 12 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 13 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 14 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 17 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 21 C -0.14 -1.66 9.64 -38.82 -0.37 -2.03 16 22 C 0.31 3.53 7.74 -17.17 -0.13 3.40 16 23 O -0.48 -4.67 13.56 -18.75 -0.25 -4.92 16 24 N -0.48 -5.51 9.77 -9.60 -0.09 -5.61 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.51 7.38 -51.92 -0.38 0.13 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 34 H 0.15 1.58 7.62 -52.49 -0.40 1.18 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 38 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.16 1.85 7.71 -52.49 -0.40 1.45 16 41 H 0.40 1.88 9.06 45.56 0.41 2.29 16 LS Contribution 351.66 15.07 5.30 5.30 Total: -1.00 -32.53 351.66 -6.68 -39.21 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.32 Total: -1.26 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.71 Total: -6.46 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.68 Total: -31.83 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.95 Total: -21.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.53 -6.68 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777141677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.772 kcal (2) G-P(sol) polarization free energy of solvation -32.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds