Wall clock time and date at job start Tue Mar 31 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46938 * 2 1 4 4 C 1.53000 * 109.46827 * 119.99891 * 2 1 3 5 5 C 1.50701 * 109.47149 * 175.00408 * 4 2 1 6 6 C 1.38016 * 119.51486 * 124.99625 * 5 4 2 7 7 C 1.39967 * 119.13057 * 180.02562 * 6 5 4 8 8 C 1.48061 * 120.89766 * 180.02562 * 7 6 5 9 9 O 1.21430 * 120.00376 * 359.97438 * 8 7 6 10 10 O 1.34672 * 120.00152 * 179.97438 * 8 7 6 11 11 C 1.45194 * 117.00239 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47245 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47247 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99450 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00007 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99921 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00057 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47017 * 90.00466 * 17 15 13 19 19 H 1.48503 * 109.47493 * 210.00058 * 17 15 13 20 20 H 1.48497 * 109.47106 * 330.00496 * 17 15 13 21 21 C 1.39657 * 118.20445 * 0.02562 * 7 6 5 22 22 C 1.38854 * 118.94338 * 0.27284 * 21 7 6 23 23 O 1.35682 * 119.61902 * 179.70066 * 22 21 7 24 24 N 1.31883 * 119.50839 * 305.02105 * 5 4 2 25 25 H 1.08994 * 109.47315 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46968 * 60.00021 * 1 2 3 27 27 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47353 * 240.00126 * 2 1 3 29 29 H 1.09002 * 109.47081 * 60.00145 * 3 2 1 30 30 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47274 * 299.99792 * 3 2 1 32 32 H 1.08994 * 109.47077 * 55.00456 * 4 2 1 33 33 H 1.09001 * 109.47085 * 294.99754 * 4 2 1 34 34 H 1.08002 * 120.43437 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.47485 * 300.00400 * 11 10 8 36 36 H 1.09002 * 109.47028 * 59.99966 * 11 10 8 37 37 H 1.09005 * 109.46966 * 300.00244 * 12 11 10 38 38 H 1.08999 * 109.46719 * 59.99936 * 12 11 10 39 39 H 0.97002 * 120.00235 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.52494 * 179.97438 * 21 7 6 41 41 H 0.96698 * 114.00037 * 90.00237 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.8293 1.1890 6 6 4.3010 -0.3419 2.2335 7 6 5.6953 -0.4460 2.1689 8 6 6.5475 0.0632 3.2675 9 8 6.0383 0.5801 4.2412 10 8 7.8873 -0.0468 3.1868 11 6 8.6597 0.4747 4.3001 12 6 10.1507 0.2622 4.0303 13 6 10.9524 0.8029 5.1861 14 1 10.4489 1.2534 6.0286 15 6 12.3287 0.7234 5.1675 16 7 13.0284 1.1957 6.1759 17 14 13.1996 -0.0552 3.7098 18 1 13.4942 0.9876 2.6944 19 1 14.4699 -0.6751 4.1654 20 1 12.3273 -1.0970 3.1108 21 6 6.2611 -1.0432 1.0403 22 6 5.4240 -1.5015 0.0317 23 8 5.9593 -2.0784 -1.0736 24 7 4.1113 -1.3879 0.1388 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6053 -1.7197 1.2951 33 1 1.7516 -0.1582 2.1370 34 1 3.8255 0.1138 3.0894 35 1 8.4597 1.5401 4.4138 36 1 8.3775 -0.0475 5.2143 37 1 10.3511 -0.8032 3.9164 38 1 10.4325 0.7847 3.1161 39 1 13.9967 1.1394 6.1630 40 1 7.3328 -1.1426 0.9514 41 1 6.0738 -3.0359 -1.0012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777141677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:16 Heat of formation + Delta-G solvation = -136.303666 kcal Electronic energy + Delta-G solvation = -22615.926032 eV Core-core repulsion = 19073.714927 eV Total energy + Delta-G solvation = -3542.211104 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.13928 -41.11579 -38.59440 -37.88114 -36.85848 -35.43688 -34.02764 -32.72665 -31.98839 -28.11011 -27.92899 -27.72736 -25.77930 -23.95006 -22.79084 -22.24286 -20.82150 -19.96305 -19.19612 -18.51508 -17.94801 -17.71119 -17.26606 -16.82288 -16.55453 -16.28112 -15.89011 -15.52601 -15.24458 -15.01005 -14.79294 -14.37964 -13.95860 -13.61876 -13.39302 -13.36237 -13.16803 -13.03892 -12.81402 -12.62869 -12.55547 -12.51820 -11.96946 -11.89961 -11.82981 -11.80161 -11.57065 -11.51567 -11.49882 -11.12542 -10.82532 -10.64143 -9.94971 -8.35508 -6.43952 -0.69496 -0.19502 1.28761 1.37621 1.38359 1.40095 1.51643 2.33199 2.34550 2.54804 2.99445 3.22149 3.41602 3.73850 3.78921 3.95807 4.08328 4.10504 4.12997 4.14901 4.25377 4.44910 4.48540 4.58634 4.76310 4.80828 4.82038 4.88136 4.94344 4.99466 5.04528 5.11359 5.24487 5.25722 5.35117 5.36730 5.45918 5.49225 5.55073 6.13744 6.45267 6.52082 6.62332 6.75219 7.21142 8.80392 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002908 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.790993 B = 9624.986480 C =10360.221866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.149 4.149 4 C -0.065 4.065 5 C 0.158 3.842 6 C -0.122 4.122 7 C -0.064 4.064 8 C 0.505 3.495 9 O -0.523 6.523 10 O -0.351 6.351 11 C 0.093 3.907 12 C -0.004 4.004 13 C -0.542 4.542 14 H 0.037 0.963 15 C 0.012 3.988 16 N -0.943 5.943 17 Si 0.953 3.047 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.242 1.242 21 C -0.140 4.140 22 C 0.313 3.687 23 O -0.483 6.483 24 N -0.488 5.488 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.271 0.729 40 H 0.162 0.838 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.089 -7.632 -15.914 29.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.103 4.103 5 C 0.020 3.980 6 C -0.142 4.142 7 C -0.073 4.073 8 C 0.349 3.651 9 O -0.413 6.413 10 O -0.267 6.267 11 C 0.020 3.980 12 C -0.041 4.041 13 C -0.580 4.580 14 H 0.055 0.945 15 C -0.186 4.186 16 N -0.583 5.583 17 Si 0.775 3.225 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.165 1.165 21 C -0.161 4.161 22 C 0.133 3.867 23 O -0.294 6.294 24 N -0.208 5.208 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.179 0.821 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.180 0.820 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -24.459 -7.229 -16.444 30.347 hybrid contribution 1.640 -0.025 0.932 1.887 sum -22.819 -7.254 -15.511 28.530 Atomic orbital electron populations 1.21806 0.93334 1.02466 1.02420 1.21028 0.96720 0.95488 0.97340 1.21877 0.99630 0.96635 1.02458 1.20854 0.85664 1.03388 1.00393 1.21297 0.98033 0.91633 0.87009 1.22304 0.91383 0.99153 1.01331 1.19377 0.93376 1.01202 0.93344 1.21424 0.81907 0.75876 0.85865 1.90814 1.75266 1.41768 1.33404 1.86497 1.18246 1.74278 1.47635 1.23085 0.90853 0.98207 0.85845 1.19478 0.89264 0.98376 0.96999 1.21092 0.92109 1.40266 1.04550 0.94504 1.25944 0.98136 0.95178 0.99377 1.70037 1.07388 1.47424 1.33435 0.85620 0.78056 0.79908 0.78890 1.18932 1.20667 1.16538 1.22554 1.03275 0.98609 0.91653 1.18986 0.86645 0.95061 0.85960 1.84769 1.81242 1.28898 1.34444 1.66875 1.12793 1.15884 1.25271 0.91763 0.92406 0.91841 0.91445 0.91657 0.95131 0.92282 0.88052 0.87948 0.82081 0.91995 0.91814 0.94395 0.94680 0.92047 0.82035 0.71431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 71.98 0.66 -0.68 16 2 C -0.09 -1.15 2.84 -10.79 -0.03 -1.18 16 3 C -0.15 -2.22 9.01 71.98 0.65 -1.57 16 4 C -0.07 -0.83 5.08 29.85 0.15 -0.68 16 5 C 0.16 2.97 5.16 42.50 0.22 3.19 16 6 C -0.12 -2.61 9.27 22.64 0.21 -2.40 16 7 C -0.06 -1.66 5.91 -19.91 -0.12 -1.78 16 8 C 0.50 16.64 7.92 70.43 0.56 17.20 16 9 O -0.52 -19.56 16.23 20.06 0.33 -19.23 16 10 O -0.35 -12.61 9.57 -55.81 -0.53 -13.14 16 11 C 0.09 3.87 5.41 71.98 0.39 4.26 16 12 C 0.00 -0.17 4.42 29.85 0.13 -0.04 16 13 C -0.54 -30.88 9.66 25.60 0.25 -30.64 16 14 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 15 C 0.01 0.68 5.47 84.65 0.46 1.14 16 16 N -0.94 -58.12 13.96 21.44 0.30 -57.82 16 17 Si 0.95 42.78 27.47 68.60 1.88 44.67 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 21 C -0.14 -3.20 9.64 22.76 0.22 -2.98 16 22 C 0.31 6.61 7.74 84.79 0.66 7.26 16 23 O -0.48 -8.43 13.56 -90.00 -1.22 -9.65 16 24 N -0.49 -10.31 9.77 -297.17 -2.90 -13.21 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 1.11 7.79 -2.39 -0.02 1.09 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.03 0.57 7.38 -2.38 -0.02 0.56 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.97 7.86 -2.39 -0.02 0.96 16 34 H 0.16 3.11 7.62 -2.91 -0.02 3.09 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.04 1.69 7.20 -2.38 -0.02 1.68 16 38 H 0.03 1.56 7.57 -2.39 -0.02 1.54 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.16 3.54 7.71 -2.91 -0.02 3.52 16 41 H 0.42 2.96 9.06 -74.06 -0.67 2.28 16 Total: -1.00 -70.41 351.66 2.57 -67.84 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.31 Total: 9.44 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.41 Total: -8.89 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -2.60 Total: -71.03 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.43 Total: -42.03 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Total: -70.41 2.57 -67.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777141677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.461 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds