Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 119.83258 * 2 1 4 4 C 1.37748 * 120.34637 * 179.97438 * 3 2 1 5 5 C 1.39802 * 119.99925 * 0.30225 * 4 3 2 6 6 C 1.47543 * 120.16456 * 179.70322 * 5 4 3 7 7 O 1.21587 * 120.00174 * 124.45169 * 6 5 4 8 8 N 1.34778 * 119.99963 * 304.44412 * 6 5 4 9 9 C 1.46499 * 120.00305 * 184.18937 * 8 6 5 10 10 C 1.50698 * 109.46945 * 90.00200 * 9 8 6 11 11 H 1.07997 * 120.00375 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99831 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99656 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00001 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47139 * 90.00079 * 14 12 10 16 16 H 1.48498 * 109.46975 * 210.00410 * 14 12 10 17 17 H 1.48501 * 109.47050 * 330.00204 * 14 12 10 18 18 C 1.46503 * 119.99985 * 4.19883 * 8 6 5 19 19 C 1.52991 * 109.47425 * 114.09026 * 18 8 6 20 20 C 1.53007 * 109.46732 * 234.09104 * 18 8 6 21 21 C 1.39983 * 119.66723 * 359.45199 * 5 4 3 22 22 O 1.35745 * 120.16840 * 180.24393 * 21 5 4 23 23 C 1.38427 * 119.83330 * 180.02562 * 2 1 3 24 24 O 1.36006 * 120.00767 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47035 * 89.99956 * 1 2 3 26 26 H 1.08998 * 109.46820 * 209.99306 * 1 2 3 27 27 H 1.08994 * 109.47085 * 329.99630 * 1 2 3 28 28 H 1.07999 * 119.82661 * 0.02635 * 3 2 1 29 29 H 1.07994 * 120.00065 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47697 * 210.00810 * 9 8 6 31 31 H 1.09010 * 109.46991 * 330.00455 * 9 8 6 32 32 H 0.97002 * 119.99458 * 180.02562 * 13 12 10 33 33 H 1.08994 * 109.46953 * 354.08787 * 18 8 6 34 34 H 1.09008 * 109.47383 * 59.99921 * 19 18 8 35 35 H 1.09005 * 109.47408 * 180.02562 * 19 18 8 36 36 H 1.09004 * 109.47565 * 299.99655 * 19 18 8 37 37 H 1.08995 * 109.47278 * 59.99567 * 20 18 8 38 38 H 1.08996 * 109.46710 * 180.02562 * 20 18 8 39 39 H 1.09001 * 109.46932 * 299.99862 * 20 18 8 40 40 H 0.96693 * 114.00351 * 270.28014 * 22 21 5 41 41 H 0.96694 * 113.99661 * 90.00175 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.2019 0.0000 4 6 3.5737 1.2142 0.0005 5 6 4.2835 0.0098 -0.0053 6 6 5.7589 0.0188 -0.0114 7 8 6.3741 -0.5752 0.8529 8 7 6.4248 0.6854 -0.9751 9 6 7.8870 0.6190 -1.0352 10 6 8.3019 -0.5414 -1.9025 11 1 7.5515 -1.1667 -2.3632 12 6 9.6397 -0.8049 -2.1078 13 7 10.0018 -1.8173 -2.8651 14 14 10.9377 0.2770 -1.3114 15 1 11.2894 -0.2722 0.0227 16 1 12.1497 0.3088 -2.1689 17 1 10.4058 1.6547 -1.1550 18 6 5.6863 1.4766 -1.9625 19 6 6.0167 2.9590 -1.7785 20 6 6.0869 1.0358 -3.3719 21 6 3.5875 -1.2047 -0.0001 22 8 4.2665 -2.3801 -0.0006 23 6 2.1957 -1.2008 -0.0005 24 8 1.5124 -2.3768 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8899 0.5139 28 1 1.6507 2.1339 0.0004 29 1 4.1053 2.1543 0.0009 30 1 8.2758 1.5456 -1.4575 31 1 8.2861 0.4824 -0.0300 32 1 10.9429 -2.0028 -3.0092 33 1 4.6161 1.3230 -1.8242 34 1 7.0870 3.1127 -1.9168 35 1 5.4669 3.5477 -2.5129 36 1 5.7313 3.2731 -0.7745 37 1 5.8516 -0.0203 -3.5029 38 1 5.5378 1.6248 -4.1065 39 1 7.1572 1.1894 -3.5101 40 1 4.4632 -2.7203 -0.8841 41 1 1.3145 -2.7166 -0.8839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000780916420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -91.088609 kcal Electronic energy + Delta-G solvation = -24536.946030 eV Core-core repulsion = 20996.695598 eV Total energy + Delta-G solvation = -3540.250432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62796 -38.96453 -36.98199 -36.52333 -35.95643 -32.89808 -32.24651 -31.04221 -29.28255 -28.60100 -26.90675 -26.73312 -23.08666 -22.66197 -21.95982 -21.12295 -19.23549 -17.91947 -17.82171 -16.91615 -16.53518 -16.47039 -15.78248 -15.01914 -14.73251 -14.38600 -14.17931 -13.84544 -13.66623 -13.43953 -13.31142 -12.90247 -12.59737 -12.52018 -12.42758 -11.99339 -11.89461 -11.76308 -11.62995 -11.39051 -11.27958 -11.00038 -10.90283 -10.53183 -10.33995 -10.29902 -10.11984 -9.48952 -9.12235 -8.61316 -8.59128 -8.54549 -7.73538 -6.09085 -4.06593 0.91917 1.10290 3.14136 3.28658 3.34278 3.37537 3.43372 3.82653 4.06792 4.17738 4.39603 4.66373 4.76234 4.99404 5.12834 5.19198 5.24701 5.35459 5.37657 5.44999 5.49724 5.59932 5.73973 5.87145 5.91623 6.00160 6.09666 6.17542 6.21646 6.27969 6.31181 6.50415 6.56398 6.75487 6.93479 6.98207 7.34139 7.40280 7.60833 7.86212 8.22172 8.46354 8.90331 8.96014 9.51691 11.03986 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021801 B = 0.004993 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.026425 B = 5606.326284 C = 6169.285553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.131 4.131 6 C 0.552 3.448 7 O -0.519 6.519 8 N -0.581 5.581 9 C 0.215 3.785 10 C -0.521 4.521 11 H 0.076 0.924 12 C 0.073 3.927 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.124 3.876 19 C -0.164 4.164 20 C -0.153 4.153 21 C 0.134 3.866 22 O -0.472 6.472 23 C 0.070 3.930 24 O -0.483 6.483 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.078 0.922 40 H 0.392 0.608 41 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.597 8.211 -0.365 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.141 4.141 4 C -0.102 4.102 5 C -0.135 4.135 6 C 0.338 3.662 7 O -0.395 6.395 8 N -0.313 5.313 9 C 0.095 3.905 10 C -0.560 4.560 11 H 0.094 0.906 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.699 3.301 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.191 1.191 18 C 0.020 3.980 19 C -0.222 4.222 20 C -0.210 4.210 21 C 0.087 3.913 22 O -0.282 6.282 23 C 0.025 3.975 24 O -0.292 6.292 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.249 0.751 41 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -18.058 7.897 1.236 19.748 hybrid contribution 0.897 0.268 -0.744 1.196 sum -17.160 8.165 0.492 19.010 Atomic orbital electron populations 1.20712 0.90341 1.03397 1.02415 1.20187 0.96803 0.92004 0.99857 1.20835 0.93623 0.97311 1.02308 1.21255 0.94045 0.97054 0.97805 1.20515 0.95160 0.93341 1.04499 1.17910 0.85811 0.79906 0.82572 1.90798 1.68572 1.42986 1.37179 1.47967 1.08602 1.47141 1.27574 1.19650 0.75034 0.97649 0.98158 1.21289 0.93033 1.12400 1.29263 0.90633 1.24832 0.98292 0.95030 0.94793 1.69885 1.16817 1.28522 1.38365 0.86908 0.81677 0.81514 0.79952 1.19925 1.21138 1.19111 1.21241 0.96272 0.90586 0.89913 1.22214 1.03012 0.95744 1.01229 1.22086 1.03701 1.01249 0.94014 1.18745 0.88738 0.85468 0.98329 1.84885 1.75727 1.34551 1.33030 1.18436 0.88591 0.85730 1.04752 1.84904 1.75464 1.35898 1.32908 0.91081 0.90730 0.91238 0.84981 0.84733 0.95036 0.94594 0.92615 0.89778 0.91630 0.91845 0.92908 0.92330 0.93254 0.90273 0.75125 0.76075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.78 36.01 0.35 -0.54 16 2 C -0.09 -0.98 5.89 -104.44 -0.62 -1.59 16 3 C -0.12 -1.31 9.67 -39.65 -0.38 -1.69 16 4 C -0.08 -1.09 7.42 -39.18 -0.29 -1.38 16 5 C -0.13 -2.24 4.82 -104.86 -0.51 -2.75 16 6 C 0.55 11.86 6.80 -12.47 -0.08 11.78 16 7 O -0.52 -13.67 16.36 3.29 0.05 -13.61 16 8 N -0.58 -11.87 2.38 -168.69 -0.40 -12.28 16 9 C 0.22 5.18 3.54 -5.20 -0.02 5.17 16 10 C -0.52 -14.43 8.40 -34.44 -0.29 -14.71 16 11 H 0.08 2.27 7.76 -52.49 -0.41 1.86 16 12 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 14 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 15 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 18 C 0.12 1.95 2.51 -67.93 -0.17 1.78 16 19 C -0.16 -2.16 9.04 37.15 0.34 -1.82 16 20 C -0.15 -2.50 8.34 37.16 0.31 -2.19 16 21 C 0.13 2.21 6.72 -38.58 -0.26 1.95 16 22 O -0.47 -8.45 12.52 -38.36 -0.48 -8.93 16 23 C 0.07 0.94 6.68 -39.16 -0.26 0.68 16 24 O -0.48 -5.71 12.30 -34.28 -0.42 -6.13 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.63 7.51 -51.93 -0.39 0.24 16 27 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.58 6.37 -52.49 -0.33 1.24 16 30 H 0.03 0.72 5.77 -51.93 -0.30 0.42 16 31 H 0.04 0.95 6.79 -51.92 -0.35 0.59 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.08 1.16 4.65 -51.93 -0.24 0.92 16 34 H 0.06 0.96 6.91 -51.92 -0.36 0.60 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.64 7.24 -51.93 -0.38 0.27 16 37 H 0.06 1.05 7.95 -51.93 -0.41 0.63 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 1.51 6.93 -51.93 -0.36 1.15 16 40 H 0.39 5.45 9.06 45.56 0.41 5.86 16 41 H 0.38 2.62 9.06 45.56 0.41 3.03 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -36.38 335.74 -6.05 -42.44 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -3.99 Total: 6.39 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -1.98 Total: -3.35 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.37 Total: -38.63 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.85 Total: -28.67 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.38 -6.05 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000780916420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.653 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds