Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34232 * 126.52531 * 2 1 4 4 C 1.34056 * 108.23975 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.36606 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47042 * 120.00468 * 5 4 3 7 7 C 1.53008 * 109.46964 * 240.00037 * 5 4 3 8 8 N 1.29917 * 109.26621 * 0.02562 * 4 3 2 9 9 C 1.36105 * 108.46976 * 359.97438 * 8 4 3 10 10 C 1.47278 * 126.46210 * 180.02562 * 9 8 4 11 11 O 1.21530 * 120.00141 * 174.72550 * 10 9 8 12 12 O 1.34777 * 119.99411 * 354.72402 * 10 9 8 13 13 C 1.45206 * 116.99872 * 185.08868 * 12 10 9 14 14 C 1.52995 * 109.47055 * 184.31652 * 13 12 10 15 15 C 1.50696 * 115.55376 * 64.76730 * 14 13 12 16 16 H 1.08007 * 119.99800 * 266.67241 * 15 14 13 17 17 C 1.37873 * 120.00357 * 86.67256 * 15 14 13 18 18 N 1.31510 * 120.00350 * 178.67486 * 17 15 14 19 19 Si 1.86802 * 119.99849 * 358.67288 * 17 15 14 20 20 H 1.48498 * 109.47238 * 91.02050 * 19 17 15 21 21 H 1.48499 * 109.47479 * 211.02166 * 19 17 15 22 22 H 1.48502 * 109.47016 * 331.02020 * 19 17 15 23 23 C 1.53005 * 117.49622 * 279.09376 * 14 13 12 24 24 C 1.53004 * 117.49703 * 210.43782 * 14 13 12 25 25 H 1.09001 * 109.47696 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47499 * 120.02492 * 1 2 3 27 27 H 1.09001 * 109.47139 * 240.01687 * 1 2 3 28 28 H 1.08995 * 109.47474 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47332 * 59.99489 * 6 5 4 30 30 H 1.09004 * 109.46943 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46702 * 299.99679 * 6 5 4 32 32 H 1.08994 * 109.46779 * 60.00602 * 7 5 4 33 33 H 1.08999 * 109.46521 * 180.02562 * 7 5 4 34 34 H 1.08995 * 109.47031 * 300.00278 * 7 5 4 35 35 H 1.09001 * 109.46613 * 304.31607 * 13 12 10 36 36 H 1.08994 * 109.47104 * 64.31164 * 13 12 10 37 37 H 0.96999 * 120.00161 * 180.02562 * 18 17 15 38 38 H 1.09000 * 117.49616 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49555 * 145.02227 * 23 14 13 40 40 H 1.09001 * 117.49621 * 214.97842 * 24 14 13 41 41 H 1.09002 * 117.49427 * 359.97166 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3059 1.0787 0.0000 4 6 3.5787 0.6581 0.0006 5 6 4.7925 1.5513 0.0002 6 6 5.6306 1.2734 1.2498 7 6 5.6311 1.2717 -1.2487 8 7 3.6010 -0.6409 0.0004 9 6 2.3176 -1.0941 0.0002 10 6 1.8867 -2.5025 0.0005 11 8 0.7068 -2.7769 0.0971 12 8 2.8011 -3.4868 -0.1064 13 6 2.2983 -4.8448 -0.2136 14 6 3.4731 -5.8249 -0.2170 15 6 4.2835 -5.8726 1.0526 16 1 5.1648 -5.2566 1.1541 17 6 3.8999 -6.7027 2.0845 18 7 4.6216 -6.7638 3.1822 19 14 2.3551 -7.7404 1.9234 20 1 2.7056 -9.0640 1.3486 21 1 1.7434 -7.9290 3.2634 22 1 1.3880 -7.0532 1.0302 23 6 4.2168 -6.0314 -1.5381 24 6 3.3011 -7.1312 -0.9949 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5142 -0.8898 27 1 -0.3633 -0.5136 0.8901 28 1 4.4762 2.5943 -0.0001 29 1 5.9469 0.2304 1.2506 30 1 6.5083 1.9198 1.2498 31 1 5.0332 1.4725 2.1395 32 1 5.0341 1.4697 -2.1389 33 1 6.5092 1.9175 -1.2487 34 1 5.9474 0.2287 -1.2479 35 1 1.6484 -5.0596 0.6347 36 1 1.7337 -4.9511 -1.1399 37 1 4.3520 -7.3481 3.9080 38 1 3.8694 -5.4688 -2.4046 39 1 5.2923 -6.2022 -1.4888 40 1 3.7744 -8.0250 -0.5884 41 1 2.3507 -7.2924 -1.5037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797079775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -46.476551 kcal Electronic energy + Delta-G solvation = -23672.445488 eV Core-core repulsion = 20134.129580 eV Total energy + Delta-G solvation = -3538.315908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.50795 -39.70204 -37.12065 -36.12054 -35.41694 -34.59660 -32.07164 -32.06152 -28.01187 -27.36439 -26.82014 -25.37115 -24.33008 -22.55034 -21.66538 -20.87182 -20.02834 -19.11099 -17.87901 -17.05763 -16.80358 -16.08909 -15.66062 -15.46824 -14.97119 -14.74024 -14.62414 -13.87661 -13.62795 -13.56859 -13.05527 -12.93627 -12.67573 -12.57455 -12.44848 -12.32820 -12.13687 -11.92898 -11.52559 -11.24530 -11.17530 -11.11809 -10.85090 -10.62981 -10.54819 -10.37047 -10.14498 -9.94933 -9.61317 -9.01138 -8.82801 -8.55913 -8.54295 -6.07541 -4.09958 0.99371 1.99899 2.32345 3.02000 3.28668 3.29600 3.39187 3.41973 3.83268 4.43041 4.43497 4.67826 4.76434 4.81516 4.90169 5.08480 5.16284 5.20193 5.33754 5.34561 5.46580 5.54098 5.65937 5.67223 5.69677 5.77627 5.85331 5.94925 5.98667 6.02414 6.07225 6.13698 6.18838 6.31910 6.44457 6.69852 6.89485 7.07314 7.10659 7.51941 7.72745 8.23402 8.55084 8.99069 9.54448 11.04492 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.004496 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.543653 B = 6226.740698 C = 6791.422579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.039 3.961 3 O -0.196 6.196 4 C 0.190 3.810 5 C 0.008 3.992 6 C -0.147 4.147 7 C -0.146 4.146 8 N -0.423 5.423 9 C -0.049 4.049 10 C 0.546 3.454 11 O -0.515 6.515 12 O -0.307 6.307 13 C 0.106 3.894 14 C -0.005 4.005 15 C -0.479 4.479 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.896 5.896 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.292 1.292 22 H -0.261 1.261 23 C -0.171 4.171 24 C -0.190 4.190 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.264 0.736 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 17.336 -8.111 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.017 4.017 3 O -0.084 6.084 4 C -0.019 4.019 5 C -0.011 4.011 6 C -0.205 4.205 7 C -0.204 4.204 8 N -0.151 5.151 9 C -0.167 4.167 10 C 0.390 3.610 11 O -0.406 6.406 12 O -0.221 6.221 13 C 0.032 3.968 14 C -0.006 4.006 15 C -0.516 4.516 16 H 0.100 0.900 17 C -0.126 4.126 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.202 1.202 21 H -0.219 1.219 22 H -0.185 1.185 23 C -0.208 4.208 24 C -0.227 4.227 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.718 16.733 -7.877 18.864 hybrid contribution -1.555 -0.378 0.113 1.605 sum -5.274 16.355 -7.764 18.857 Atomic orbital electron populations 1.20474 0.82388 1.03911 1.05633 1.23646 0.94990 0.83322 0.99784 1.84325 1.18217 1.35959 1.69916 1.26392 0.83683 0.90529 1.01333 1.19682 0.86785 0.96064 0.98616 1.21888 0.99289 1.04080 0.95253 1.21873 0.99278 1.03965 0.95234 1.70880 1.21036 1.08199 1.15016 1.20488 0.89279 0.92917 1.14023 1.19440 0.83854 0.84681 0.73057 1.90810 1.18185 1.84150 1.47447 1.86721 1.37561 1.16786 1.81010 1.23144 0.96983 0.76689 0.99934 1.19310 0.95342 0.92195 0.93781 1.20234 1.11059 1.24645 0.95659 0.90015 1.24988 0.96355 0.96356 0.94912 1.69887 1.38720 1.38741 1.05984 0.86921 0.84339 0.81205 0.77204 1.20175 1.21854 1.18539 1.22815 0.98271 1.02311 0.97450 1.23008 1.00311 0.94135 1.05270 0.90159 0.88353 0.88010 0.88538 0.90517 0.90917 0.92224 0.92349 0.90918 0.90642 0.91148 0.93476 0.92565 0.90808 0.89104 0.88733 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 9.15 36.00 0.33 -0.39 16 2 C 0.04 0.56 7.44 -35.05 -0.26 0.30 16 3 O -0.20 -2.65 10.72 6.56 0.07 -2.58 16 4 C 0.19 2.65 6.81 -13.09 -0.09 2.56 16 5 C 0.01 0.08 3.39 -91.77 -0.31 -0.23 16 6 C -0.15 -1.42 9.17 37.16 0.34 -1.08 16 7 C -0.15 -1.30 9.17 37.16 0.34 -0.96 16 8 N -0.42 -7.52 11.36 -7.67 -0.09 -7.61 16 9 C -0.05 -0.88 7.04 -83.04 -0.58 -1.47 16 10 C 0.55 11.31 7.95 34.41 0.27 11.58 16 11 O -0.52 -10.64 15.33 -19.29 -0.30 -10.94 16 12 O -0.31 -7.16 10.16 -40.70 -0.41 -7.57 16 13 C 0.11 2.44 5.00 37.15 0.19 2.63 16 14 C -0.01 -0.13 1.06 -155.66 -0.16 -0.29 16 15 C -0.48 -13.77 9.35 -34.44 -0.32 -14.09 16 16 H 0.08 2.60 8.06 -52.48 -0.42 2.17 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 19 Si 0.88 21.92 24.89 -169.99 -4.23 17.69 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.26 -6.22 5.73 56.52 0.32 -5.89 16 23 C -0.17 -3.60 9.96 -26.69 -0.27 -3.86 16 24 C -0.19 -4.06 7.62 -26.69 -0.20 -4.26 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 1.11 8.01 -51.93 -0.42 0.70 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.71 6.47 -51.93 -0.34 1.37 16 36 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.09 2.08 7.29 -51.93 -0.38 1.70 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -33.61 348.88 -6.01 -39.62 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.26 Total: 0.45 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -0.83 Total: -7.44 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.69 Total: -34.49 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.64 Total: -21.09 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.23 Total: 17.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.61 -6.01 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797079775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.858 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds