Wall clock time and date at job start Tue Mar 31 2020 06:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34232 * 126.52531 * 2 1 4 4 C 1.34056 * 108.23975 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.36606 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47042 * 120.00468 * 5 4 3 7 7 C 1.53008 * 109.46964 * 240.00037 * 5 4 3 8 8 N 1.29917 * 109.26621 * 0.02562 * 4 3 2 9 9 C 1.36105 * 108.46976 * 359.97438 * 8 4 3 10 10 C 1.47278 * 126.46210 * 180.02562 * 9 8 4 11 11 O 1.21530 * 120.00141 * 174.72550 * 10 9 8 12 12 O 1.34777 * 119.99411 * 354.72402 * 10 9 8 13 13 C 1.45206 * 116.99872 * 185.08868 * 12 10 9 14 14 C 1.52995 * 109.47055 * 184.31652 * 13 12 10 15 15 C 1.50696 * 115.55376 * 64.76730 * 14 13 12 16 16 H 1.08007 * 119.99800 * 266.67241 * 15 14 13 17 17 C 1.37873 * 120.00357 * 86.67256 * 15 14 13 18 18 N 1.31510 * 120.00350 * 178.67486 * 17 15 14 19 19 Si 1.86802 * 119.99849 * 358.67288 * 17 15 14 20 20 H 1.48498 * 109.47238 * 91.02050 * 19 17 15 21 21 H 1.48499 * 109.47479 * 211.02166 * 19 17 15 22 22 H 1.48502 * 109.47016 * 331.02020 * 19 17 15 23 23 C 1.53005 * 117.49622 * 279.09376 * 14 13 12 24 24 C 1.53004 * 117.49703 * 210.43782 * 14 13 12 25 25 H 1.09001 * 109.47696 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47499 * 120.02492 * 1 2 3 27 27 H 1.09001 * 109.47139 * 240.01687 * 1 2 3 28 28 H 1.08995 * 109.47474 * 0.02562 * 5 4 3 29 29 H 1.08995 * 109.47332 * 59.99489 * 6 5 4 30 30 H 1.09004 * 109.46943 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.46702 * 299.99679 * 6 5 4 32 32 H 1.08994 * 109.46779 * 60.00602 * 7 5 4 33 33 H 1.08999 * 109.46521 * 180.02562 * 7 5 4 34 34 H 1.08995 * 109.47031 * 300.00278 * 7 5 4 35 35 H 1.09001 * 109.46613 * 304.31607 * 13 12 10 36 36 H 1.08994 * 109.47104 * 64.31164 * 13 12 10 37 37 H 0.96999 * 120.00161 * 180.02562 * 18 17 15 38 38 H 1.09000 * 117.49616 * 0.02562 * 23 14 13 39 39 H 1.09005 * 117.49555 * 145.02227 * 23 14 13 40 40 H 1.09001 * 117.49621 * 214.97842 * 24 14 13 41 41 H 1.09002 * 117.49427 * 359.97166 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3059 1.0787 0.0000 4 6 3.5787 0.6581 0.0006 5 6 4.7925 1.5513 0.0002 6 6 5.6306 1.2734 1.2498 7 6 5.6311 1.2717 -1.2487 8 7 3.6010 -0.6409 0.0004 9 6 2.3176 -1.0941 0.0002 10 6 1.8867 -2.5025 0.0005 11 8 0.7068 -2.7769 0.0971 12 8 2.8011 -3.4868 -0.1064 13 6 2.2983 -4.8448 -0.2136 14 6 3.4731 -5.8249 -0.2170 15 6 4.2835 -5.8726 1.0526 16 1 5.1648 -5.2566 1.1541 17 6 3.8999 -6.7027 2.0845 18 7 4.6216 -6.7638 3.1822 19 14 2.3551 -7.7404 1.9234 20 1 2.7056 -9.0640 1.3486 21 1 1.7434 -7.9290 3.2634 22 1 1.3880 -7.0532 1.0302 23 6 4.2168 -6.0314 -1.5381 24 6 3.3011 -7.1312 -0.9949 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3634 -0.5142 -0.8898 27 1 -0.3633 -0.5136 0.8901 28 1 4.4762 2.5943 -0.0001 29 1 5.9469 0.2304 1.2506 30 1 6.5083 1.9198 1.2498 31 1 5.0332 1.4725 2.1395 32 1 5.0341 1.4697 -2.1389 33 1 6.5092 1.9175 -1.2487 34 1 5.9474 0.2287 -1.2479 35 1 1.6484 -5.0596 0.6347 36 1 1.7337 -4.9511 -1.1399 37 1 4.3520 -7.3481 3.9080 38 1 3.8694 -5.4688 -2.4046 39 1 5.2923 -6.2022 -1.4888 40 1 3.7744 -8.0250 -0.5884 41 1 2.3507 -7.2924 -1.5037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797079775.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:42 Heat of formation + Delta-G solvation = -69.837140 kcal Electronic energy + Delta-G solvation = -23673.458479 eV Core-core repulsion = 20134.129580 eV Total energy + Delta-G solvation = -3539.328899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.66139 -41.32984 -38.87882 -37.19821 -36.93253 -35.76087 -34.28649 -33.07897 -29.53478 -28.26036 -28.11079 -27.33897 -25.62029 -23.74092 -23.33193 -22.06517 -21.22636 -21.02028 -19.30952 -18.70299 -18.24256 -17.69653 -17.36019 -16.86552 -16.60005 -15.96791 -15.60821 -15.42501 -14.88210 -14.69543 -14.63094 -14.35859 -14.13915 -13.90735 -13.80897 -13.50045 -13.11769 -13.08996 -12.79538 -12.70530 -12.51734 -12.31621 -12.15316 -12.11234 -12.06839 -11.99343 -11.75781 -11.68063 -11.51050 -10.96301 -10.69264 -10.41867 -9.99974 -8.32677 -6.40696 -0.24136 0.74149 1.21546 1.31235 1.34776 1.45460 1.57610 1.85704 2.32825 2.73666 2.99760 3.13852 3.36842 3.64384 3.87569 3.93170 4.02471 4.04555 4.16903 4.19985 4.24605 4.32471 4.35306 4.50843 4.53319 4.72720 4.77807 4.79363 4.84624 4.89771 4.90690 4.97531 4.98601 5.08963 5.16068 5.31348 5.37526 5.39553 5.42275 5.62625 6.26059 6.32732 6.65216 6.70181 7.27759 8.83647 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.004496 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.543653 B = 6226.740698 C = 6791.422579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.068 3.932 3 O -0.186 6.186 4 C 0.201 3.799 5 C 0.008 3.992 6 C -0.145 4.145 7 C -0.142 4.142 8 N -0.472 5.472 9 C -0.099 4.099 10 C 0.542 3.458 11 O -0.521 6.521 12 O -0.335 6.335 13 C 0.111 3.889 14 C -0.043 4.043 15 C -0.483 4.483 16 H 0.025 0.975 17 C 0.019 3.981 18 N -0.948 5.948 19 Si 0.938 3.062 20 H -0.255 1.255 21 H -0.296 1.296 22 H -0.238 1.238 23 C -0.157 4.157 24 C -0.171 4.171 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.041 0.959 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.267 0.733 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 18.849 -10.061 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.011 3.989 3 O -0.074 6.074 4 C -0.009 4.009 5 C -0.011 4.011 6 C -0.203 4.203 7 C -0.200 4.200 8 N -0.200 5.200 9 C -0.215 4.215 10 C 0.387 3.613 11 O -0.413 6.413 12 O -0.250 6.250 13 C 0.037 3.963 14 C -0.044 4.044 15 C -0.521 4.521 16 H 0.043 0.957 17 C -0.179 4.179 18 N -0.588 5.588 19 Si 0.762 3.238 20 H -0.179 1.179 21 H -0.223 1.223 22 H -0.161 1.161 23 C -0.194 4.194 24 C -0.208 4.208 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.153 0.847 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.777 18.247 -9.857 21.529 hybrid contribution -0.797 -0.679 0.734 1.279 sum -6.574 17.567 -9.123 20.858 Atomic orbital electron populations 1.20713 0.79506 1.06492 1.05730 1.24260 0.96272 0.82323 0.96091 1.84382 1.18068 1.35301 1.69622 1.27275 0.84710 0.90059 0.98843 1.20059 0.85169 0.97125 0.98794 1.21888 1.00521 1.02635 0.95261 1.21868 1.00370 1.02752 0.94996 1.70818 1.21558 1.10364 1.17257 1.20441 0.90520 0.92425 1.18157 1.19825 0.83619 0.85260 0.72572 1.90771 1.18028 1.84455 1.47999 1.86718 1.39058 1.17408 1.81775 1.22974 0.96095 0.76632 1.00559 1.19221 0.96787 0.95313 0.93031 1.20323 1.09960 1.23416 0.98381 0.95660 1.25893 0.99915 0.97843 0.94220 1.70048 1.41167 1.40353 1.07222 0.85904 0.80238 0.80149 0.77546 1.17918 1.22264 1.16146 1.22858 0.97951 1.02075 0.96487 1.23085 1.01770 0.92451 1.03455 0.86388 0.87601 0.88189 0.84685 0.93960 0.87660 0.92475 0.91897 0.87819 0.93686 0.93003 0.90392 0.92447 0.87846 0.89993 0.89477 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.15 71.23 0.65 -0.63 16 2 C 0.07 1.87 7.44 25.20 0.19 2.06 16 3 O -0.19 -4.67 10.72 0.56 0.01 -4.66 16 4 C 0.20 5.48 6.81 88.39 0.60 6.08 16 5 C 0.01 0.14 3.39 -11.54 -0.04 0.10 16 6 C -0.15 -2.68 9.17 71.98 0.66 -2.02 16 7 C -0.14 -2.33 9.17 71.98 0.66 -1.67 16 8 N -0.47 -17.30 11.36 -293.09 -3.33 -20.63 16 9 C -0.10 -3.64 7.04 40.38 0.28 -3.35 16 10 C 0.54 22.91 7.95 70.20 0.56 23.46 16 11 O -0.52 -21.46 15.33 19.74 0.30 -21.16 16 12 O -0.33 -16.09 10.16 -56.89 -0.58 -16.66 16 13 C 0.11 5.06 5.00 71.98 0.36 5.42 16 14 C -0.04 -2.06 1.06 -52.93 -0.06 -2.12 16 15 C -0.48 -29.12 9.35 25.60 0.24 -28.88 16 16 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 17 C 0.02 1.12 5.47 84.65 0.46 1.58 16 18 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 19 Si 0.94 45.24 24.89 68.60 1.71 46.94 16 20 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 22 H -0.24 -10.55 5.73 99.48 0.57 -9.98 16 23 C -0.16 -6.38 9.96 30.62 0.30 -6.07 16 24 C -0.17 -6.84 7.62 30.62 0.23 -6.60 16 25 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.10 2.00 8.01 -2.39 -0.02 1.98 16 28 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 2.50 6.47 -2.39 -0.02 2.49 16 36 H 0.08 3.03 8.09 -2.39 -0.02 3.01 16 37 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 38 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 39 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 40 H 0.09 3.63 7.29 -2.39 -0.02 3.61 16 41 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -78.89 348.88 4.40 -74.49 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.89 Total: 15.36 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: 5.11 Total: -12.64 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -3.03 Total: -81.66 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -0.27 Total: -42.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.71 Total: 46.94 kcal Total: -78.89 4.40 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797079775.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.651 kcal (2) G-P(sol) polarization free energy of solvation -78.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds